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Research ArticleINVESTIGATION

A Male-Specific Genetic Map of the Microcrustacean Daphnia pulex Based on Single Sperm Whole-Genome Sequencing

Sen Xu, Matthew S. Ackerman, Hongan Long, Lydia Bright, Ken Spitze, Jordan S. Ramsdell, W. Kelley Thomas and Michael Lynch
Genetics June 2015, genetics.115.179028; DOI: https://doi.org/10.1534/genetics.115.179028

Files in this data supplement:

  • Supporting Information: Figure S1 and Files S1-S5 (PDF, 6 MB)
  • Figure S1: The male genetic linkage map based on 1672 haplotype blocks derived from 104 single sperm genomes. (PDF, 6 MB)
  • File S1: The raw text output file for the genetic map of D. pulex. (.txt, 62 KB)
  • File S2: Python script phasingHaplotype.py to generate haplotype blocks and input file for MSTmap software. For usage and input data format, please see beginning of the file. (.zip, 5 KB)
  • File S3: MareyMap database created by combining the genetic map data and the current Daphnia reference assembly. (.zip, 20 KB)
  • File S4: The raw text output file for the genetic map based on sperm de novo assembly. (.txt, 20 KB)
  • File S5: Supplementary material. (PDF, 65 KB)

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