July 2017 Table of Contents

Investigations

• Methods, Technology, and Resources

  • Whole-Genome Restriction Mapping by “Subhaploid”-Based RAD Sequencing: An Efficient and Flexible Approach for Physical Mapping and Genome Scaffolding

    Open Access

    Jinzhuang Dou, Huaiqian Dou, Chuang Mu, Lingling Zhang, Yangping Li, Jia Wang, Tianqi Li, Yuli Li, Xiaoli Hu, Shi Wang, Zhenmin Bao

    Genetics July 2017 206: 1237-1250; https://doi.org/10.1534/genetics.117.200303
  • A Neurotransmitter Atlas of the Caenorhabditis elegans Male Nervous System Reveals Sexually Dimorphic Neurotransmitter Usage

    Esther Serrano-Saiz, Laura Pereira, Marie Gendrel, Ulkar Aghayeva, Abhishek Bhattacharya, Kelly Howell, L. Rene Garcia, Oliver Hobert

    Genetics July 2017 206: 1251-1269; https://doi.org/10.1534/genetics.117.202127

• Statistical Genetics and Genomics

  • Accounting for Sampling Error in Genetic Eigenvalues Using Random Matrix Theory

    Jacqueline L. Sztepanacz, Mark W. Blows

    Genetics July 2017 206: 1271-1284; https://doi.org/10.1534/genetics.116.198606
  • Building Ultra-High-Density Linkage Maps Based on Efficient Filtering of Trustable Markers

    Yefim I. Ronin, David I. Mester, Dina G. Minkov, Eduard Akhunov, Abraham B. Korol

    Genetics July 2017 206: 1285-1295; https://doi.org/10.1534/genetics.116.197491
  • Orthogonal Estimates of Variances for Additive, Dominance, and Epistatic Effects in Populations

    Zulma G. Vitezica, Andrés Legarra, Miguel A. Toro, Luis Varona

    Genetics July 2017 206: 1297-1307; https://doi.org/10.1534/genetics.116.199406
  • Statistical Methods for Latent Class Quantitative Trait Loci Mapping

    Open Access

    Shuyun Ye, Rhonda Bacher, Mark P. Keller, Alan D. Attie, Christina Kendziorski

    Genetics July 2017 206: 1309-1317; https://doi.org/10.1534/genetics.117.203885

• Genome Integrity and Transmission

  • The Nucleoporin Nup2 Contains a Meiotic-Autonomous Region that Promotes the Dynamic Chromosome Events of Meiosis

    Daniel B. Chu, Tatiana Gromova, Trent A. C. Newman, Sean M. Burgess

    Genetics July 2017 206: 1319-1337; https://doi.org/10.1534/genetics.116.194555
  • Residues in the Nucleosome Acidic Patch Regulate Histone Occupancy and Are Important for FACT Binding in Saccharomyces cerevisiae

    Amelia J. Hodges, Lisa M. Gloss, John J. Wyrick

    Genetics July 2017 206: 1339-1348; https://doi.org/10.1534/genetics.117.201939
  • The SOS and RpoS Regulons Contribute to Bacterial Cell Robustness to Genotoxic Stress by Synergistically Regulating DNA Polymerase Pol II

    Open Access

    Tanja Dapa, Sébastien Fleurier, Marie-Florence Bredeche, Ivan Matic

    Genetics July 2017 206: 1349-1360; https://doi.org/10.1534/genetics.116.199471
  • Gene Introgression in Weeds Depends on Initial Gene Location in the Crop: Brassica napus–Raphanus raphanistrum Model

    Katarzyna Adamczyk-Chauvat, Sabrina Delaunay, Anne Vannier, Caroline François, Gwenaëlle Thomas, Frédérique Eber, Maryse Lodé, Marie Gilet, Virginie Huteau, Jérôme Morice, Sylvie Nègre, Cyril Falentin, Olivier Coriton, Henri Darmency, Bachar Alrustom, Eric Jenczewski, Mathieu Rousseau-Gueutin, Anne-Marie Chèvre

    Genetics July 2017 206: 1361-1372; https://doi.org/10.1534/genetics.117.201715
  • High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism

    Benoit Darrier, Hélène Rimbert, François Balfourier, Lise Pingault, Ambre-Aurore Josselin, Bertrand Servin, Julien Navarro, Frédéric Choulet, Etienne Paux, Pierre Sourdille

    Genetics July 2017 206: 1373-1388; https://doi.org/10.1534/genetics.116.196014
  • A Novel Histone Crosstalk Pathway Important for Regulation of UV-Induced DNA Damage Repair in Saccharomyces cerevisiae

    Anna L. Boudoures, Jacob J. Pfeil, Elizabeth M. Steenkiste, Rachel A. Hoffman, Elizabeth A. Bailey, Sara E. Wilkes, Sarah K. Higdon, Jeffrey S. Thompson

    Genetics July 2017 206: 1389-1402; https://doi.org/10.1534/genetics.116.195735

• Gene Expression

  • The RNAi Inheritance Machinery of Caenorhabditis elegans

    George Spracklin, Brandon Fields, Gang Wan, Diveena Becker, Ashley Wallig, Aditi Shukla, Scott Kennedy

    Genetics July 2017 206: 1403-1416; https://doi.org/10.1534/genetics.116.198812

• Cellular Genetics

  • Neutral Competition for Drosophila Follicle and Cyst Stem Cell Niches Requires Vesicle Trafficking Genes

    Open Access

    Matthew S. Cook, Coralie Cazin, Marc Amoyel, Shinya Yamamoto, Erika Bach, Todd Nystul

    Genetics July 2017 206: 1417-1428; https://doi.org/10.1534/genetics.117.201202

• Developmental and Behavioral Genetics

  • Regulatory Mechanisms of Metamorphic Neuronal Remodeling Revealed Through a Genome-Wide Modifier Screen in Drosophila melanogaster

    Open Access

    Dahong Chen, Tingting Gu, Tom N. Pham, Montgomery J. Zachary, Randall S. Hewes

    Genetics July 2017 206: 1429-1443; https://doi.org/10.1534/genetics.117.200378
  • Behavioral Deficits Following Withdrawal from Chronic Ethanol Are Influenced by SLO Channel Function in Caenorhabditis elegans

    Luisa L. Scott, Scott J. Davis, Rachel C. Yen, Greg J. Ordemann, Sarah K. Nordquist, Deepthi Bannai, Jonathan T. Pierce

    Genetics July 2017 206: 1445-1458; https://doi.org/10.1534/genetics.116.193102
  • Maternal Torso-Like Coordinates Tissue Folding During Drosophila Gastrulation

    Travis K. Johnson, Karyn A. Moore, James C. Whisstock, Coral G. Warr

    Genetics July 2017 206: 1459-1468; https://doi.org/10.1534/genetics.117.200576
  • Potential Nematode Alarm Pheromone Induces Acute Avoidance in Caenorhabditis elegans

    Ying Zhou, Mario Loeza-Cabrera, Zheng Liu, Boanerges Aleman-Meza, Julie K. Nguyen, Sang-Kyu Jung, Yuna Choi, Qingyao Shou, Rebecca A. Butcher, Weiwei Zhong

    Genetics July 2017 206: 1469-1478; https://doi.org/10.1534/genetics.116.197293
  • An Evolutionarily Conserved Role of Presenilin in Neuronal Protection in the Aging Drosophila Brain

    Jongkyun Kang, Sarah Shin, Norbert Perrimon, Jie Shen

    Genetics July 2017 206: 1479-1493; https://doi.org/10.1534/genetics.116.196881
  • Functional Equivalence of the SOX2 and SOX3 Transcription Factors in the Developing Mouse Brain and Testes

    Fatwa Adikusuma, Daniel Pederick, Dale McAninch, James Hughes, Paul Thomas

    Genetics July 2017 206: 1495-1503; https://doi.org/10.1534/genetics.117.202549
  • Cap-n-Collar Promotes Tissue Regeneration by Regulating ROS and JNK Signaling in the Drosophila melanogaster Wing Imaginal Disc

    Amanda R. Brock, Mabel Seto, Rachel K. Smith-Bolton

    Genetics July 2017 206: 1505-1520; https://doi.org/10.1534/genetics.116.196832
  • Regulation of WNT Signaling at the Neuromuscular Junction by the Immunoglobulin Superfamily Protein RIG-3 in Caenorhabditis elegans

    Open Access

    Pratima Pandey, Ashwani Bhardwaj, Kavita Babu

    Genetics July 2017 206: 1521-1534; https://doi.org/10.1534/genetics.116.195297
  • Pervasive Behavioral Effects of MicroRNA Regulation in Drosophila

    Open Access

    Joao Picao-Osorio, Ines Lago-Baldaia, Pedro Patraquim, Claudio R. Alonso

    Genetics July 2017 206: 1535-1548; https://doi.org/10.1534/genetics.116.195776

• Population and Evolutionary Genetics

  • Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation

    Julien Jouganous, Will Long, Aaron P. Ragsdale, Simon Gravel

    Genetics July 2017 206: 1549-1567; https://doi.org/10.1534/genetics.117.200493
  • Selection To Increase Expression, Not Sequence Diversity, Precedes Gene Family Origin and Expansion in Rattlesnake Venom

    Mark J. Margres, Alyssa T. Bigelow, Emily Moriarty Lemmon, Alan R. Lemmon, Darin R. Rokyta

    Genetics July 2017 206: 1569-1580; https://doi.org/10.1534/genetics.117.202655
  • Mathematical Constraints on F_ST: Biallelic Markers in Arbitrarily Many Populations

    Nicolas Alcala, Noah A. Rosenberg

    Genetics July 2017 206: 1581-1600; https://doi.org/10.1534/genetics.116.199141

• Genetics of Complex Traits

  • Sharing of Genes and Pathways Across Complex Phenotypes: A Multilevel Genome-Wide Analysis

    Hongsheng Gui, Johnny S. Kwan, Pak C. Sham, Stacey S. Cherny, Miaoxin Li

    Genetics July 2017 206: 1601-1609; https://doi.org/10.1534/genetics.116.198150
  • Safeguarding Our Genetic Resources with Libraries of Doubled-Haploid Lines

    Albrecht E. Melchinger, Pascal Schopp, Dominik Müller, Tobias A. Schrag, Eva Bauer, Sandra Unterseer, Linda Homann, Wolfgang Schipprack, Chris-Carolin Schön

    Genetics July 2017 206: 1611-1619; https://doi.org/10.1534/genetics.115.186205
  • The Genomic Architecture of Flowering Time Varies Across Space and Time in Mimulus guttatus

    Patrick J. Monnahan, John K. Kelly

    Genetics July 2017 206: 1621-1635; https://doi.org/10.1534/genetics.117.201483
  • Host Genome Influence on Gut Microbial Composition and Microbial Prediction of Complex Traits in Pigs

    Amelia Camarinha-Silva, Maria Maushammer, Robin Wellmann, Marius Vital, Siegfried Preuss, Jörn Bennewitz

    Genetics July 2017 206: 1637-1644; https://doi.org/10.1534/genetics.117.200782
  • Resolving the Complex Genetic Basis of Phenotypic Variation and Variability of Cellular Growth

    Naomi Ziv, Bentley M. Shuster, Mark L. Siegal, David Gresham

    Genetics July 2017 206: 1645-1657; https://doi.org/10.1534/genetics.116.195180
  • Trends in DNA Methylation with Age Replicate Across Diverse Human Populations

    Shyamalika Gopalan, Oana Carja, Maud Fagny, Etienne Patin, Justin W. Myrick, Lisa M. McEwen, Sarah M. Mah, Michael S. Kobor, Alain Froment, Marcus W. Feldman, Lluis Quintana-Murci, Brenna M. Henn

    Genetics July 2017 206: 1659-1674; https://doi.org/10.1534/genetics.116.195594
  • Improving Response in Genomic Selection with a Population-Based Selection Strategy: Optimal Population Value Selection

    Matthew Goiffon, Aaron Kusmec, Lizhi Wang, Guiping Hu, Patrick S. Schnable

    Genetics July 2017 206: 1675-1682; https://doi.org/10.1534/genetics.116.197103

• Genome and Systems Biology

  • A New Method, “Reverse Yeast Two-Hybrid Array” (RYTHA), Identifies Mutants that Dissociate the Physical Interaction Between Elg1 and Slx5

    Ifat Lev, Keren Shemesh, Marina Volpe, Soumitra Sau, Nelly Levinton, Maya Molco, Shivani Singh, Batia Liefshitz, Shay Ben Aroya, Martin Kupiec

    Genetics July 2017 206: 1683-1697; https://doi.org/10.1534/genetics.117.200451