Data supplements
Supplemental Material for Yang, et al, 2016
Supporting Information
- Figure S1 - Schematic of the process of generating RC-NILs for phenotyping. (.pdf, 122 KB)
- Table S1 - Markers used in fine-mapping etb1.2. (.pdf, 170 KB)
- Table S2 - Primers used for sequencing ZmYAB2.1. (.pdf, 204 KB)
- Table S3 - Samples used for DNA sequence analysis and selection tests. (.pdf, 90 KB)
- Table S4 - Samples used for surveying allele distribution. (.pdf, 317 KB)
- Table S5 - Primers used for ZmYAB2.1 genotyping and expression analyses. (.pdf, 125 KB)
- Table S6 - PCR fragment sizes for alleles used in allele specific expression analysis. (.pdf, 82 KB)
- Table S7 - Allele specific expression results of ZmYAB2.1 with five or more reads from Lemmon et al. (.pdf, 153 KB)
- Figure S2 - Geographical distributions of 3 null ZmYAB2.1 alleles: W22_Spm A, B73_Spm B, Mo17_82bp C in maize landrace populations. (.pdf, 127 KB)
- Figure S3 - Cartoon showing recombination breakpoint of a RC-NIL (IN0949) in between Exon 1 and Exon 2 of ZmYAB2.1. (.pdf, 89 KB)
- Figure S4 - Genotypes of 20 NI-RILs used in testing interaction between ZmYAB2.1 and tb1. (.pdf, 386 KB)
- Figure S5 - ZmYAB2.1 3?UTR probe hybridized to maize ears containing the maize allele (A) or the teosinte allele (B). (.pdf, 186 KB)
- Figure S6 - Reordering of B73 AGPv2 reference genome contigs around GRMZM2G085873. (.pdf, 209 KB)
- Figure S7 - Alignment of GRMZM2G085873 sequences from B73, W22 and teosinte. (.pdf, 144 KB)
- Figure S8 - Phylogenetic tree for YABBY gene family. (.pdf, 132 KB)
- Figure S9 - Linkage disequilibrium (LD) plots of SNPs from ZmYAB2.1 exon 1 region, 34 kb upstream region, 68 kb upstream region, and five other randomly selected genomic regions from publicly available maize 55k SNP Chip dataset (Cook et al. 2012). (.pdf, 322 KB)
