Supporting Information for Wang et al., 2015

Supporting Information

• Supporting Information - Figures S1-S6, Files S1-S7, and Tables S1-S2. (.pdf, 1.29 MB)
• File S3 - Sequence of the p2 transcript detected in P1P2-3 allele in kernel pericarp. (.pdf, 354 KB)
• File S4 - The alignment of the MITE in the duplication with the representative MITE. (.pdf, 344 KB)
• File S5 - The alignment between the 3'TIR of the duplicated MITE (SQ225117735) with a compatible MITE 5'TIR in the genome. (.pdf, 347 KB)
• File S6 - 5' TIRs with perfect complementarity to the 3' TIR of the duplication-associated MITE SQ225117735 are found in multiple MITEs in the maize B73 genome. (.pdf, 347 KB)
• File S7 - Comparison of Ac insertion sites from standard transposition in p1 (ATHMA et al. 1992) and alternative transposition in p2 (this study). (.pdf, 395 KB)
• Table S1 - Oligonucleotide primer sequences used in PCR experiments. (.pdf, 195 KB)
• Table S2 - Cytogenetic evidence for presence of reciprocal translocations associated with the P1P2 alleles. (.pdf, 277 KB)
• Figure S1 - Evidence that the P1P2 alleles contain tandem direct duplications. (.pdf, 323 KB)
• Figure S2 - Alignment of deduced amino acid sequences of P1 and P1P2 proteins. (.pdf, 542 KB)
• Figure S3 - Analysis of potential alternative splicing in P1P2 fusion alleles. (.pdf, 545 KB)
• Figure S4 - The predicted structure of duplications induced by NAHR (Non-Allelic Homologous Recombination) or UCO (Unequal Crossover). (.pdf, 327 KB)
• Figure S5 - Kernel pericarp pigmentation specified by P1P2 alleles. (.pdf, 434 KB)
• Figure S6 - Comparison of Ac insertion sites from standard transposition in p1 (ATHMA et al. 1992) and alternative transposition in p2 (from RET; this study). (.pdf, 407 KB)
• File S1 - Sequences at the p1-vv-D103 translocation junction. (.pdf, 360 KB)
• File S2 - Sequences of P1P2 fusion junctions. (.pdf, 363 KB)