August 2009 Table of Contents

Investigations

• Methods, technology and resources

  • High-Throughput Multiplex Sequencing to Discover Copy Number Variants in Drosophila

    Bryce Daines, Hui Wang, Yumei Li, Yi Han, Richard Gibbs, Rui Chen

    Genetics August 2009 182: 935-941; https://doi.org/10.1534/genetics.109.103218

• Gene expression

  • Global Analysis of Allele-Specific Expression in Arabidopsis thaliana

    Xu Zhang, Justin O. Borevitz

    Genetics August 2009 182: 943-954; https://doi.org/10.1534/genetics.109.103499
  • The Ccr4-Pop2-NOT mRNA Deadenylase Contributes to Septin Organization in Saccharomyces cerevisiae

    Ana Traven, Traude H. Beilharz, Tricia L. Lo, Franziska Lueder, Thomas Preiss, Jörg Heierhorst

    Genetics August 2009 182: 955-966; https://doi.org/10.1534/genetics.109.104414
  • Domains of Heterochromatin Protein 1 Required for Drosophila melanogaster Heterochromatin Spreading

    Karrie A. Hines, Diane E. Cryderman, Kaitlin M. Flannery, Hongbo Yang, Michael W. Vitalini, Tulle Hazelrigg, Craig A. Mizzen, Lori L. Wallrath

    Genetics August 2009 182: 967-977; https://doi.org/10.1534/genetics.109.105338
  • Centrosomin: A Complex Mix of Long and Short Isoforms Is Required for Centrosome Function During Early Development in Drosophila melanogaster

    Robert C. Eisman, Melissa A. S. Phelps, Thomas C. Kaufman

    Genetics August 2009 182: 979-997; https://doi.org/10.1534/genetics.109.103887
  • Molecular Genetic Analysis of Suppressor 2 of zeste Identifies Key Functional Domains

    Richard B. Emmons, Heather Genetti, Stephen Filandrinos, Jillian Lokere, Chao-ting Wu

    Genetics August 2009 182: 999-1013; https://doi.org/10.1534/genetics.108.097360

• Cellular genetics

  • The Cation Diffusion Facilitator Gene cdf-2 Mediates Zinc Metabolism in Caenorhabditis elegans

    Diana E. Davis, Hyun Cheol Roh, Krupa Deshmukh, Janelle J. Bruinsma, Daniel L. Schneider, James Guthrie, J. David Robertson, Kerry Kornfeld

    Genetics August 2009 182: 1015-1033; https://doi.org/10.1534/genetics.109.103614
  • Using RNA Interference to Identify Specific Modifiers of a Temperature-Sensitive, Embryonic-Lethal Mutation in the Caenorhabditis elegans Ubiquitin-Like Nedd8 Protein Modification Pathway E1-Activating Gene rfl-1

    Marc Dorfman, José-Eduardo Gomes, Sean O'Rourke, Bruce Bowerman

    Genetics August 2009 182: 1035-1049; https://doi.org/10.1534/genetics.109.104885

• Developmental and behavioral genetics

  • Genetic Modifiers of dFMR1 Encode RNA Granule Components in Drosophila

    Anne-Marie J. Cziko, Cathal T. McCann, Iris C. Howlett, Scott A. Barbee, Rebecca P. Duncan, Rene Luedemann, Daniela Zarnescu, Konrad E. Zinsmaier, Roy R. Parker, Mani Ramaswami

    Genetics August 2009 182: 1051-1060; https://doi.org/10.1534/genetics.109.103234
  • A Screen for Modifiers of Notch Signaling Uncovers Amun, a Protein With a Critical Role in Sensory Organ Development

    Nevine A. Shalaby, Annette L. Parks, Eric J. Morreale, Marisa C. Osswalt, Kristen M. Pfau, Eric L. Pierce, Marc A. T. Muskavitch

    Genetics August 2009 182: 1061-1076; https://doi.org/10.1534/genetics.108.099986
  • Analysis of Pax6 Contiguous Gene Deletions in the Mouse, Mus musculus, Identifies Regions Distinct from Pax6 Responsible for Extreme Small-Eye and Belly-Spotting Phenotypes

    Jack Favor, Alan Bradley, Nathalie Conte, Dirk Janik, Walter Pretsch, Peter Reitmeir, Michael Rosemann, Wolfgang Schmahl, Johannes Wienberg, Irmgard Zaus

    Genetics August 2009 182: 1077-1088; https://doi.org/10.1534/genetics.109.104562
  • A Drosophila Resource of Transgenic RNAi Lines for Neurogenetics

    Jian-Quan Ni, Lu-Ping Liu, Richard Binari, Robert Hardy, Hye-Seok Shim, Amanda Cavallaro, Matthew Booker, Barret D. Pfeiffer, Michele Markstein, Hui Wang, Christians Villalta, Todd R. Laverty, Lizabeth A. Perkins, Norbert Perrimon

    Genetics August 2009 182: 1089-1100; https://doi.org/10.1534/genetics.109.103630
  • Genome Engineering-Based Analysis of Bearded Family Genes Reveals Both Functional Redundancy and a Nonessential Function in Lateral Inhibition in Drosophila

    Soline Chanet, Nicolas Vodovar, Véronique Mayau, François Schweisguth

    Genetics August 2009 182: 1101-1108; https://doi.org/10.1534/genetics.109.105023

• Population and evolutionary genetics

  • Evolution of Neo-Sex Chromosomes in Silene diclinis

    Elaine C. Howell, Susan J. Armstrong, Dmitry A. Filatov

    Genetics August 2009 182: 1109-1115; https://doi.org/10.1534/genetics.109.103580
  • One- and Two-Locus Population Models With Differential Viability Between Sexes: Parallels Between Haploid Parental Selection and Genomic Imprinting

    Alexey Yanchukov

    Genetics August 2009 182: 1117-1127; https://doi.org/10.1534/genetics.109.102376
  • The Functional Transfer of Genes From the Mitochondria to the Nucleus: The Effects of Selection, Mutation, Population Size and Rate of Self-Fertilization

    Yaniv Brandvain, Michael J. Wade

    Genetics August 2009 182: 1129-1139; https://doi.org/10.1534/genetics.108.100024
  • Modeling Multiallelic Selection Using a Moran Model

    Christina A. Muirhead, John Wakeley

    Genetics August 2009 182: 1141-1157; https://doi.org/10.1534/genetics.108.089474
  • Evolution of Stochastic Switching Rates in Asymmetric Fitness Landscapes

    Marcel Salathé, Jeremy Van Cleve, Marcus W. Feldman

    Genetics August 2009 182: 1159-1164; https://doi.org/10.1534/genetics.109.103333
  • Sexual Isolation in Acinetobacter baylyi Is Locus-Specific and Varies 10,000-Fold Over the Genome

    Jessica L. Ray, Klaus Harms, Odd-Gunnar Wikmark, Irina Starikova, Pål J. Johnsen, Kaare M. Nielsen

    Genetics August 2009 182: 1165-1181; https://doi.org/10.1534/genetics.109.103127
  • Contribution of Gene Amplification to Evolution of Increased Antibiotic Resistance in Salmonella typhimurium

    Song Sun, Otto G. Berg, John R. Roth, Dan I. Andersson

    Genetics August 2009 182: 1183-1195; https://doi.org/10.1534/genetics.109.103028
  • Species-Wide Genetic Variation and Demographic History of Drosophila sechellia, a Species Lacking Population Structure

    Delphine Legrand, Maud I. Tenaillon, Pat Matyot, Justin Gerlach, Daniel Lachaise, Marie-Louise Cariou

    Genetics August 2009 182: 1197-1206; https://doi.org/10.1534/genetics.108.092080
  • Efficient Approximate Bayesian Computation Coupled With Markov Chain Monte Carlo Without Likelihood

    Daniel Wegmann, Christoph Leuenberger, Laurent Excoffier

    Genetics August 2009 182: 1207-1218; https://doi.org/10.1534/genetics.109.102509
  • Measuring the Rates of Spontaneous Mutation From Deep and Large-Scale Polymorphism Data

    Philipp W. Messer

    Genetics August 2009 182: 1219-1232; https://doi.org/10.1534/genetics.109.105692
  • Age Structure, Changing Demography and Effective Population Size in Atlantic Salmon (Salmo salar)

    Friso P. Palstra, Michael F. O'Connell, Daniel E. Ruzzante

    Genetics August 2009 182: 1233-1249; https://doi.org/10.1534/genetics.109.101972

• Genetics of complex traits

  • Map-Based Cloning of the Gene Associated With the Soybean Maturity Locus E3

    Satoshi Watanabe, Rumiko Hideshima, Zhengjun Xia, Yasutaka Tsubokura, Shusei Sato, Yumi Nakamoto, Naoki Yamanaka, Ryoji Takahashi, Masao Ishimoto, Toyoaki Anai, Satoshi Tabata, Kyuya Harada

    Genetics August 2009 182: 1251-1262; https://doi.org/10.1534/genetics.108.098772
  • Mapping in Structured Populations by Resample Model Averaging

    William Valdar, Christopher C. Holmes, Richard Mott, Jonathan Flint

    Genetics August 2009 182: 1263-1277; https://doi.org/10.1534/genetics.109.100727
  • Transcriptional Regulation of Metabolism Associated With the Increased Desiccation Resistance of the Cactophilic Drosophila mojavensis

    Luciano M. Matzkin, Therese A. Markow

    Genetics August 2009 182: 1279-1288; https://doi.org/10.1534/genetics.109.104927
  • Association Genetics of Coastal Douglas Fir (Pseudotsuga menziesii var. menziesii, Pinaceae). I. Cold-Hardiness Related Traits

    Andrew J. Eckert, Andrew D. Bower, Jill L. Wegrzyn, Barnaly Pande, Kathleen D. Jermstad, Konstantin V. Krutovsky, J. Bradley St. Clair, David B. Neale

    Genetics August 2009 182: 1289-1302; https://doi.org/10.1534/genetics.109.102350
  • Identification of a New Rice Blast Resistance Gene, Pid3, by Genomewide Comparison of Paired Nucleotide-Binding Site–Leucine-Rich Repeat Genes and Their Pseudogene Alleles Between the Two Sequenced Rice Genomes

    Junjun Shang, Yong Tao, Xuewei Chen, Yan Zou, Cailin Lei, Jing Wang, Xiaobing Li, Xianfeng Zhao, Meijun Zhang, Zhike Lu, Jichen Xu, Zhukuan Cheng, Jianmin Wan, Lihuang Zhu

    Genetics August 2009 182: 1303-1311; https://doi.org/10.1534/genetics.109.102871
  • Expression of Distinct Self-Incompatibility Specificities in Arabidopsis thaliana

    Nathan A. Boggs, Kathleen G. Dwyer, Paurush Shah, Amanda A. McCulloch, Jesper Bechsgaard, Mikkel H. Schierup, Mikhail E. Nasrallah, June B. Nasrallah

    Genetics August 2009 182: 1313-1321; https://doi.org/10.1534/genetics.109.102442
  • Evolutionary History of GS3, a Gene Conferring Grain Length in Rice

    Noriko Takano-Kai, Hui Jiang, Takahiko Kubo, Megan Sweeney, Takashi Matsumoto, Hiroyuki Kanamori, Badri Padhukasahasram, Carlos Bustamante, Atsushi Yoshimura, Kazuyuki Doi, Susan McCouch

    Genetics August 2009 182: 1323-1334; https://doi.org/10.1534/genetics.109.103002
  • A New Standard Genetic Map for the Laboratory Mouse

    Allison Cox, Cheryl L. Ackert-Bicknell, Beth L. Dumont, Yueming Ding, Jordana Tzenova Bell, Gudrun A. Brockmann, Jon E. Wergedal, Carol Bult, Beverly Paigen, Jonathan Flint, Shirng-Wern Tsaih, Gary A. Churchill, Karl W. Broman

    Genetics August 2009 182: 1335-1344; https://doi.org/10.1534/genetics.109.105486
  • Variation in Genomic Recombination Rates Among Heterogeneous Stock Mice

    Beth L. Dumont, Karl W. Broman, Bret A. Payseur

    Genetics August 2009 182: 1345-1349; https://doi.org/10.1534/genetics.109.105114

• Genome and systems biology

  • The Fractionated Orthology of Bs2 and Rx/Gpa2 Supports Shared Synteny of Disease Resistance in the Solanaceae

    Michael Mazourek, Elizabeth T. Cirulli, Sarah M. Collier, Laurie G. Landry, Byoung-Cheorl Kang, Edmund A. Quirin, James M. Bradeen, Peter Moffett, Molly M. Jahn

    Genetics August 2009 182: 1351-1364; https://doi.org/10.1534/genetics.109.101022
  • Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?

    Weilong Hao, G. Brian Golding

    Genetics August 2009 182: 1365-1375; https://doi.org/10.1534/genetics.109.104216