Abstract
Recombination and chromosome synapsis bring homologous chromosomes together, creating chiasmata that ensure accurate disjunction during reductional division. SPO13 is a key gene required for meiosis I (MI) reductional segregation, but dispensable for recombination, in Saccharomyces cerevisiae. Absence of SPO13 leads to single-division meiosis where reductional segregation is largely eliminated, but other meiotic events occur relatively normally. This phenotype allows haploids to produce viable meiotic products. Spo13p is thought to act by delaying nuclear division until sister centromeres/chromatids undergo proper cohesion for segregation to the same pole at MI. In the present study, a search for new spo13-like mutations that allow haploid meiosis recovered only new spo13 alleles. Unexpectedly, an unusual reduced-expression allele (spo13-23) was recovered that behaves similarly to a null mutant in haploids but to a wild-type allele in diploids, dependent on the presence of recombining homologs rather than on a diploid genome. This finding demonstrates that in addition to promoting accurate homolog disjunction, recombination can also function to partially substitute for SPO13 in promoting sister cohesion. Analysis of various recombination-defective mutants indicates that this contribution of recombination to reductional segregation requires full levels of crossing over. The implications of these results regarding SPO13 function are discussed.
MEIOSIS is the process by which diploid organisms reduce their chromosome number by half to produce haploid gametes for sexual reproduction. It is a specialized type of cell division whose genetic control has many components in common with mitosis. The most striking difference between mitotic and meiotic nuclear division is the separation of homologs at meiosis I (MI) in a reductional division. Below, two sisters segregating to the same pole will be referred to as “reductional chromosome behavior” (irrespective of whether homologous chromosomes go to opposite poles). Three properties of meiotic chromosomes act to form a bivalent that will undergo proper reductional division (reviewed in Moore and Orr-Weaver 1998). First, meiotic recombination between nonsister chromatids creates chiasmata, forming physical links between homologs that direct accurate disjunction. Second, cohesion between sister chromatid arms is necessary to maintain the chiasmata, which persist until the onset of anaphase in MI. Third, sister centromere cohesion ensures that the chromatids of each homolog coorient and remain together during meiosis I and keeps them together until they segregate to opposite poles at meiosis II.
In organisms in which recombination is a normal part of meiosis, reciprocal exchange has been shown to be essential for proper separation of homologs since they segregate randomly at MI in recombination-defective (Rec−) mutants (reviewed in Bakeret al. 1976; Kupiecet al. 1997). An example of this occurs in Saccharomyces cerevisiae spo11 mutants, which are defective in double-strand break formation (Keeneyet al. 1997). Such mutants are Rec− and execute two meiotic segregation events, producing mature spore products that are almost always inviable due to aneuploidy resulting from disordered MI segregation (Klapholz and Esposito 1982). Sister cohesion prevents separation of homologs upon resolution of recombination intermediates even though the arm region distal to the crossover site is now covalently linked to the opposite homolog (reviewed in Bickel and Orr-Weaver 1996; Moore and Orr-Weaver 1998). Recombination and sister cohesion place the MI bivalent under tension due to opposing forces between chiasmata (keeping homologs together) and polar microtubules (pulling homologs apart), which balance one another, promoting stable attachment of the bivalent to the spindle (Nicklas 1967).
Subsequently, the differential release of sister chromatid cohesion at arms and centromeres directs chromosome segregation at both divisions (reviewed in Bickel and Orr-Weaver 1996; Moore and Orr-Weaver 1998). At metaphase of MI, sister centromeres are cohered and cooriented toward the same spindle pole. At the onset of anaphase I, dissolution of arm cohesion (distal to chiasmata) releases homolog connections, allowing segregation to opposite poles. Cohesion/coorientation of sister centromeres, however, remains until metaphase of meiosis II, at which point they become bi-oriented and attach to microtubules from opposite poles of the spindle. At anaphase II, sister centromere cohesion dissolves, finally allowing equational segregation of sister chromatids.
Meiotic progression in wild-type and spo13 meiosis. This figure shows the meiotic behavior of a single pair of homologous chromosomes (gray and white). (A) Wild-type diploids execute all meiotic landmarks and produce tetrads with haploid spores. spo13 diploids undergo premeiotic DNA synthesis, pairing, and exchange. They then complete a single meiotic division. In many strains, most chromosomes undergo an equational (MII-like) division and produce dyads with diploid spores genetically similar to the starting diploid (except for the effects of recombination). (B) Recombination-defective SPO13 diploids undergo random segregation at MI, producing tetrads with aneuploid, inviable spores. Since spo13 mutants do not execute reductional segregation, such aneuploidy is eliminated in spo13 Rec− strains, which can produce dyads with diploid, viable spores. (C) MAT heterozygous SPO13 haploids also undergo random segregation at MI, producing univalent chromosomes in aneuploid tetranucleate cells that do not form mature spores. The absence of reductional division in spo13 mutants allows haploids to complete a single meiotic division and produce dyads with haploid, viable spores.
The SPO13 gene, which is dispensable for meiotic recombination, is also required for MI segregation. The spo13-1 allele was identified along with spo12-1 in a strain of S. cerevisiae, ATCC4117, known to undergo a single nuclear division during sporulation (Klapholz and Esposito 1980a). spo13 mutants produce two-spored asci (dyads) with diploid spores resulting from a single meiotic division (Klapholz and Esposito 1980b). In many strain backgrounds, including W303 (used for this study), most chromosomes undergo equational division (Figure 1A). Reductional segregation is specifically defective while other events of meiosis are largely unaffected, including premeiotic DNA synthesis, recombination, equational segregation, and spore formation (Klapholz and Esposito 1980b). Interestingly, spo13 mutants allow production of viable meiotic products even when there are no recombining homologous chromosomes (e.g., Rec− diploids and haploids; Malone and Esposito 1981; Wagstaffet al. 1982). This occurs presumably because the single, largely equational division eliminates the lethal effects of random reductional segregation and resulting aneuploidy. The fact that sister chromatids segregate from one another during the single division implies that sister centromere cohesion is absent during the division. What then directs the accurate (rather than random) equational disjunction of sister chromatids in these mutants? By analogy to mitotic division, we presume that sister arm cohesion must occur normally in a spo13 mutant and provide the proper tension for stable microtubule attachment and regular equational segregation (see Biggins and Murray 1999).
Three pieces of data, however, demonstrate that SPO13 is not absolutely required for reductional division and that sister centromere cohesin assembly/stabilization can occur in the absence of SPO13. First, within the largely equational division seen in many spo13 strains, individual chromosomes may behave aberrantly, where one member of a pair segregates equationally (sisters apart), while the other segregates reductionally (sisters together; Klapholz and Esposito 1980b). Second, in some strain backgrounds spo13 diploids have been reported to undergo either a single, largely reductional meiotic division (Hollingsworth and Byers 1989), or a single mixed division in which individual chromosomes segregate reductionally or equationally (Hugerat and Simchen 1993). Significantly, in all of the above cases, when initiation of recombination is blocked, aberrant segregation is virtually eliminated and little or no reductional segregation is seen. Finally and most dramatically, the spo13 deletion phenotype is partially suppressed and reductional division is restored when meiosis is slowed by sporulation either at low temperature or in the presence of hydroxyurea (McCarroll and Esposito 1994).
How does SPO13 function? SPO13 encodes a 291-amino acid protein with no striking homology to known proteins (Buckinghamet al. 1990). Its transcription is repressed during vegetative growth and specifically induced (~70-fold) during meiosis with maximal levels at about the time of MI (Wanget al. 1987; Buckinghamet al. 1990). We have proposed that SPO13 specifically regulates sister centromere cohesion without affecting cohesion of sister arms. A clue as to how this might occur comes from the observation that mitotic overexpression of SPO13 (e.g., from a galactose-inducible promoter) causes a CDC28-dependent cell cycle arrest at the metaphase-to-anaphase transition (McCarroll and Esposito 1994). Meiotic overexpression of SPO13 also inhibits progression of M phase during MI, but instead of arresting cells, it acts as a transient negative regulator, significantly delaying the first meiotic division compared to control cultures (McCarroll and Esposito 1994). These observations led to the model that SPO13 promotes reductional segregation through a CDC28-dependent mechanism that delays the metaphase-to-anaphase transition at MI until chromosomes establish/stabilize sister centromere cohesion. As predicted by this model, other conditions that lead to similar delays (e.g., low temperature, hydroxyurea treatment) can substitute for SPO13 and promote reductional division (McCarroll and Esposito 1994).
Over the last several years, significant progress has been made in understanding the molecular basis of sister chromatid cohesion (reviewed in Biggins and Murray 1999). A number of mitotic cohesins, as well as some meiosis-specific homologs, including the Rec8 proteins of budding and fission yeast, have been identified and studied (Molnaret al. 1995; Kleinet al. 1999; Parisiet al. 1999). Rec8, which is required for centromere cohesion, is initially localized along the length of pachytene chromosome cores and later becomes restricted to sister centromeres at the time of the MI division, persisting until the onset of anaphase II (Kleinet al. 1999). The recent finding that centromere localization of Rec8 during meiotic divisions is dependent on SPO13 in baker's yeast (Kleinet al. 1999) lends support to the view that SPO13 regulates centromere cohesion. It is not yet known whether this occurs by allowing time for factor(s) to stabilize/protect Rec8 in this region or by a more direct mechanism (see discussion).
The aim of this study was to recover new spo13-like mutants in order to identify other components of the SPO13-dependent centromere cohesion pathway. During the course of this analysis, a reduced-expression allele, spo13-23, was isolated. Using this allele and two others with similar phenotypes, we found that SPO13 function and recombination have partially redundant roles in sister centromere cohesion during MI reductional segregation. These studies and their implications for SPO13 function are discussed below.
MATERIALS AND METHODS
Strains: The genotypes of S. cerevisiae strains are listed in Table 1. All strains constructed in this study were derived by genomic integration of markers into the isogenic haploids W303-1A and W303-1B (R. Rothstein) and confirmed by Southern blot analysis. Haploids with various markers were crossed and tetrad analysis was used to recover appropriate segregants.
Gene duplications used to monitor intrachromosomal recombination (trp1-1::URA3::trp1-3′ Δ and can1-100::ADE2:: CAN1s) were made by integration of pRS19 containing URA3 and trp1-3′ Δ (Strichet al. 1986) at trp1-1 and pADECAN (Fritzeet al. 1997) at can1-100, respectively. Deletion and other mutant alleles of SPO13 were constructed as follows. The spo13-Δ4 complete deletion allele was made by two-step gene replacement (Rothstein 1991) using the plasmid pCM103 (this laboratory). The spo13::hisG allele was made by one-step gene replacement of the wild-type SPO13 allele (Rothstein 1983) with the spo13 5′::hisG::URA3::hisG::spo13 3′ cassette from pNKY58 (gift of N. Kleckner) followed by selection for loopout of the URA3 marker (Alaniet al. 1987). Various mutant alleles, spo13-23, spo13-9, or spo13-10, were introduced by two-step gene replacement of the wild-type gene using the plasmids pBE917, pBE918, and pBE919, respectively. Various recombination-defective mutant alleles were constructed as follows. A spo11 deletion allele constructed in this laboratory (C. Atcheson), spo11-Δ3 yhl021c::HIS3, includes a disruption of the gene immediately upstream, YHL021C, with HIS3. yhl021c mutants have no detectable phenotype in mitosis or meiosis. red1::LEU2 and mek1::LEU2 disruption alleles were constructed by one-step gene replacement using the plasmids pB72 (Rockmill and Roeder 1988) and pB118 (Rockmill and Roeder 1991), respectively (gifts of G. S. Roeder). msh4::KanMX and msh5::KanMX deletions were constructed by replacement of the corresponding wild-type genes with a KanMX6 cassette using short flanking PCR-generated homology (Wach 1996). Heterozygous centromere-proximal markers were introduced into the W303 strain to monitor meiotic reductional and equational segregation. A TRP1 (chromosome IV) haploid was recovered from a mitotic loopout recombination event at the trp1-1::URA3::trp1-3′ Δ marker. LEU2 (chromosome III) and URA3 (chromosome V) strains were made by transformation of mutant haploid strains with restriction fragments containing wild-type alleles of these genes.
S. cerevisiae strains
Plasmids: Plasmids used in this study (Table 2) were manipulated using standard methods (Maniatiset al. 1989). Highcopy (2 μm) SPO13 and spo13-23 plasmids (pBE983, pBE984) were made by cloning the BamHI-XmnI fragments from p(SPO13)8 and pBE902 (see below) into the BamHI-SmaI sites of pRS426. The plasmids p9-45-2 (spo13-9) and p10-46-2 (spo13-10) were isolated in a hydroxylamine mutagenesis of theplasmid pCM103 (R. McCarroll and R. E. Esposito, unpublished results). BamHI-HindIII fragments from these plasmids were cloned into the BamHI-HindIII sites of YIp5, creating the allele replacement plasmids pBE918 and pBE919, respectively.
Yeast methods, growth, and sporulation: Standard methods used for yeast growth (Adamset al. 1997), sporulation (Klapholz and Esposito 1982; Klapholzet al. 1985), and transformation (Chenet al. 1992; Johnston 1994) have been described. Percentage of asci on SPIII plates (2% potassium acetate, 0.1% dextrose, 0.25% yeast extract, 75 mg/liter of required amino acids, 1.8% Bacto agar) was scored after 5 days of incubation at either 23° (for haploids) or at 30° (for diploids), unless otherwise noted. Approximately 300 cells for each of three independent clones were counted. Spore viability was determined from at least three independent dissections of 20 tetrads or 40 dyads each.
Isolation of suppressors of reductional segregation: The haploid strain REE2999 bearing the plasmid pBE272 (MATa LEU2) was mutagenized with ethyl methanesulfonate (EMS) to a level of 30% survival (Guthrie and Fink 1991). Survivors were plated on synthetic growth media lacking leucine to select for the plasmid. The resulting colonies were replica plated to SPIII and incubated for 5 days at 30°. To select for completion of recombination and segregation, cells were replica plated to canavanine-containing media. The Canr survivors result from either loopout or gene conversion between CAN1 alleles, followed by segregation of the recombined (can1r) allele from the parental (CAN1s) allele. Surviving Canr clones were patched to master plates and retested for ability to undergo meiotic recombination using the trp1-1::URA3::trp1-Δ marker and selecting for Trp+ recombinant survivors on media lacking tryptophan. Isolates surviving both the initial selection and rescreening were considered candidate mutant suppressors of reductional segregation.
Plasmids
Recovery and localization of the spo13-23 mutation: The EMS-induced spo13-23 allele was recovered from chromosome VIII by gap repair (Rothstein 1991). The gapped vector was prepared from a BstEII/XbaI digest of p(SPO13)8, gel purified and transformed into the spo13-23 mutant haploid. Plasmids from several independent isolates were recovered and transformed into spo13Δ strains to test their sporulation phenotype. One plasmid had the spo13-23 phenotype and was named p(spo13-23)8. The spo13 allele on this plasmid was sequenced and found to contain more than four differences from the published sequence (Saccharomyces genomic resources, Stanford University). Restriction fragment swapping between p(SPO13)8 and p(spo13-23) more precisely localized the spo13-23 mutation to a region upstream of the open reading frame. This region had only two single-base changes from the published SPO13 sequence. These were introduced individually by PCR site-directed mutagenesis (Vallejoet al. 1995) into a wild-type SPO13 allele. The spo13-23 phenotype was found to be due to a G to A change at position −129 upstream of the AUG initiating codon. This allele was cloned into YIp5 to construct the allele replacement plasmid pBE917. All experiments described here (except those in Figure 3) were done using this reintroduced spo13-23 allele.
S1 nuclease protection assays: Total RNA was isolated from growth and sporulation culture samples by the glass bead/phenol protocol (Ausubelet al. 1991). S1 nuclease protection analysis was performed using 20 μg of total RNA for each hybridization as previously described (Elderet al. 1983). SPO13 (Surosky and Esposito 1992) and DED1 (Tevzadzeet al. 2000) RNA probes were synthesized in in vitro transcription reactions. DED1 mRNA was used as a loading control since its levels are constant during meiosis (C. Atcheson, G. Tevzadze and R. E. Esposito, unpublished observations). DED1 is an essential gene thought to be required for mRNA translation initiation (Struhl 1985; Chuanget al. 1997). Both SPO13 and DED1 probes were used at concentrations shown to give a linear relationship between the signal and the amount of RNA used in the hybridization (data not shown). Quantitation of SPO13 and DED1 (control) signals in S1 gels was done with a Molecular Dynamics PhosphorImager using ImageQuant software.
Genetic determination of aberrant segregation: Aberrant segregation, in which one spore segregates equationally and the other segregates reductionally (sisters together), was examined using three heterozygous centromere-proximal markers, TRP1, URA3, and LEU2. In this study, Rec+ spo13-Δ4 and double mutant spo11 spo13-Δ4 and spo11 spo13-23 strains were all observed to produce dyads containing apparent reductional segregation (one spore + and the other spore −) for one of three markers tested. These dyads were analyzed further to distinguish whether the +:− segregation resulted from either a reductional (+/+; −/−) or aberrant (+/+/−; +) division. The wild-type diploid spore from each dyad tested (either +/+ or +/+/−) was transformed with either a SPO13 plasmid [p(SPO13)8] for spo13-Δ4 spores, or a SPO11 plasmid [pBE979] for spo13-23 spores. These were then sporulated, tetrads were dissected, and the resulting spore clones were scored for segregation of the marker in question. If the dyad diploid spore clone was +/+ for the marker, only + haploid spores will be recovered. If the dyad diploid spore clone was +/+/− for the marker, then both + and − haploid spores will be found based on trisomic segregation (Klapholz and Esposito 1980a). All dyads tested were found to result from aberrant segregation. Chromosome segregation was also examined in msh4 spo13-Δ4 and msh4 spo13-23 dyad asci, using the same three centromere-proximal markers. In this case, the level of aberrant vs. reductional segregation was determined for chromosome III on the basis of segregation of the codominant mating type locus.
Selection for recombination and equational segregation. An intrachromosomal recombination marker (can1r:: ADE2::CAN1s) is used to selectfor both recombination and equational segregation as shown. Following premeiotic DNA synthesis, homologous recombination between the CAN1 alleles results in either a loopout excision or a gene conversion event, leaving either can1r or CAN1s allele(s) on that chromatid. If the former event is followed by equational segregation of the parental chromatid(can1r::ADE2::CAN1s) from the recombined chromatid (can1r or can1r::ADE2::can1r), one of the spores in the resulting dyad will be canavanine resistant (Canr). The appearance of Canr spores thus reflects completion of both recombination and equational segregation.
RESULTS
spo13 mutants appear to be unique in allowing haploids to produce viable meiotic products: To identify genes that act with SPO13 to control the meiosis I division, novel spo13-like mutants were sought by selecting for alleles that suppress reductional division and allow haploid meiosis. Although wild-type haploids expressing both MATa and MATα can enter meiosis, execute two meiotic divisions, and form tetranucleate cells, they do not form viable products. Since haploids contain only a single homolog for each chromosome, reductional chromosome behavior (sisters together segregation) leads to extensive aneuploidy and failure of packaging of mature spores (Wagstaffet al. 1982). To select for haploid meiosis, a MATα haploid containing a plasmid bearing MATa was mutagenized with EMS. The strain contained two gene duplications, can1r::ADE2::CAN1s and trp1-1::URA3::trp1-3′ Δ. The first was used to simultaneously select for intrachromosomal recombination and equational segregation after incubation on sporulation medium by recovery of Canr clones (Figure 2; materials and methods). The second duplication provided a rapid assay to rescreen candidates for meiotic recombination proficiency by recovery of Trp+ prototrophs.
Among 160,000 survivors of mutagenesis, 10 putative mutants that produce mature dyads with viable spores during meiosis were identified by this procedure (Figure 3, top). All mutant isolates were tested for spo13 complementation in two ways. First, complementation was assayed in diploid meiosis by crossing to a spo13-1 null haploid and scoring for the percentage of tetrad and dyad asci (Figure 3, bottom). Second, complementation was examined in haploid meiosis by transformation with a wild-type SPO13 plasmid (data not shown). These tests demonstrated that 9 out of the 10 mutants contain spo13 alleles and have phenotypes virtually identical to the spo13 null. The remaining mutant also proved to contain an allele of SPO13, but exhibited unusual behavior as described in the next section. Given these data, the probability of another nonessential gene with the same phenotype was calculated at ~1 × 10−3. This calculation assumes that two equally mutable genes with the same mutant phenotype are present in the genome; if this were the case, then the probability of isolating only one of them 10 times is (0.5)n where n = 10. On the basis of the large number of independent spo13 alleles recovered and the failure to isolate mutations in other genes, we conclude that mutations in spo13 are likely to be unique in their ability to suppress reductional segregation and permit haploid meiosis.
An unusual reduced-expression allele behaves similarly to a spo13 null in haploid meiosis and a SPO13 wild type in diploid meiosis: A novel mutant (#23) was recovered that produces dyad asci in haploid meiosis similar to a spo13Δ null mutant (Figure 3, top). However, when crossed to a spo13-1 null mutant, the resulting diploid produces tetrads similar to a wild-type strain (Figure 3, bottom). Segregation analysis confirmed that this mutation (#23) resides in the SPO13 gene. Among 20 tetrads, all segregated 0:4 for spo13, assayed by their ability to produce dyads with viable spores in haploid meiosis. The novel allele was designated spo13-23.
Sporulation phenotypes of new alleles of spo13. The top shows dyad production (solid bars) in haploid mutants capable of sporulation. The bottom shows dyad (solid bars) and tetrad (open bars) production in these mutants when crossed to a spo13-1 null mutant, REE1660.
To understand the molecular nature of spo13-23, the mutation was recovered from the genome, localized, and sequenced. The spo13-23 phenotype was found to be due to a G to A change in the promoter at position −129 upstream of the translational start codon (Figure 4A). S1 nuclease protection analysis demonstrated that spo13-23 mRNA is repressed normally during mitosis and is induced at about the same time as the wild-type mRNA (Figure 4B; Steber and Esposito 1995). However, peak expression reaches only one-half of wild-type levels, indicating that spo13-23 is a reduced-expression allele (Figure 4B). Since the mutation is in a region known to be needed for full levels of transcriptional activation in meiosis (L. Buckingham and R. E. Esposito, unpublished observations), we postulate that it disrupts function of an element needed for full levels of meiotic activation. Studies are underway to define this element.
If the only defect of the spo13-23 allele is reduced expression of a wild-type protein, then increasing its gene dosage should restore a wild-type phenotype. This was found to be the case. Comparison of the ability of spo13-23 and SPO13 single-copy (CEN) plasmids and similar high-copy (2 μm) plasmids to complement the spo13Δ phenotype in Rec+ diploids, Rec− diploids, and haploids showed that single-copy spo13-23 complements only ~65% as well as SPO13. In contrast, high-copy spo13-23 and SPO13 complement to about the same extent (data not shown).
Reductional segregation in spo13-23 mutants is dependent on recombination and not ploidy: To determine if the differential behavior of this allele in diploids and haploids is related to diploidy or the presence of recombining chromosomes, the sporulation phenotype of spo13-23 was examined in Rec+ and Rec− diploids. If diploidy per se is required for reductional division independent of recombination, then tetrads should be produced in both Rec+ and Rec− spo13-23 diploids. Alternatively, if recombination is the critical factor, then spo13-23 strains should produce tetrads in Rec+ diploids and dyads in Rec− diploids. In these studies, the Rec− phenotype was conferred by the presence of a spo11 mutation. SPO11 encodes the enzyme required to catalyze double-strand break formation (Keeneyet al. 1997). Mutants in this gene are completely defective in meiotic recombination and although they execute both divisions, the spores produced are inviable due to aneuploidy resulting from random segregation at MI (Klapholz and Esposito 1982). The type of meiotic chromosome division (reductional vs. equational) was examined in these experiments using heterozygous, centromere-proximal markers on three different chromosomes. In addition, spore viability was measured to gauge meiotic division accuracy since spores produced from inaccurate divisions have reduced viability due to aneuploidy.
As expected, all strains containing the wild-type SPO13 gene (Rec+ or Rec−) execute two meiotic divisions, while those containing a spo13 null allele undergo a single meiotic division (Figure 5). SPO13 wild-type Rec+ diploids produce tetrads with high spore viability. Those lacking recombining homologs (Rec− diploids and Rec+ haploids) complete two meiotic divisions, but fail to form viable spores due to catastrophic reductional segregation. All spo13 deletion strains (Rec+ or Rec− diploids and Rec+ haploids) produce dyads with two viable spores (see Figure 5). These data are consistent with previously published results (Malone and Esposito 1981; Klapholz and Esposito 1982; Wagstaffet al. 1982; Klapholzet al. 1985).
In contrast, the number of divisions in spo13-23 mutants varies, specifically dependent on the presence of recombining homologs rather than diploidy. As described earlier, spo13-23 haploids behave like the spo13 null (Figures 3 and 5). Rec+ spo13-23 diploids execute both reductional and equational divisions, producing tetrads with near wild-type spore viability (93 vs. 96%). On the other hand, in the absence of recombination, spo13-23 diploids lose the ability to form tetrads and instead behave like spo13 null strains, bypassing reductional segregation and executing a single equational segregation, producing dyads. Spore viability in the dyads derived from spo13-23 Rec− diploids is moderately reduced compared to spo13 null Rec− diploids (54 vs. 89%), suggesting that the equational division in spo13-23 is slightly less accurate than in the null. Spore viability of haploid spo13-23 and SPO13 wild-type dyads is nearly identical (53 vs. 54%). Since the number of divisions in spo13-23 diploids depends on recombination and since Rec− diploids and haploids behave similarly, we conclude that the presence of recombination can substitute for reduced SPO13 function. To test the unlikely possibility that spo13-23 mRNA accumulates to a higher level in Rec+ vs. Rec− strains, we performed S1 analysis of spo13-23 mRNA in SPO11 and spo11 diploids. Since the mRNA accumulation was the same in both strains, these results confirmed that the difference in phenotype is due to a difference in recombination and not due to an indirect effect on SPO13 transcription (data not shown).
Location and expression of spo13-23. (A) The region from −80 to −140 upstream of the SPO13 open reading frame is necessary and sufficient for regulation of SPO13 transcription. The fragment from −80 to −101 contains URS1 and directs both mitotic repression and meiotic activation. The region from −101 to −140 is also necessary for full levels of meiotic activation. The spo13-23 mutation is a G to A change located at position −129. (B) S1 nuclease protection analysis of SPO13 mRNA levels in wild-type (W303a × W303α) and spo13-23 (REE3386 × REE3387) diploids in vegetative cells (V) and during a meiotic time course experiment (left). The DED1 transcript is used as a loading control. SPO13/DED1 mRNA levels are quantitated and expressed as a percentage of the wild-type maximum levels (SPO13+, squares; spo13-23, diamonds; right). Samples collected from a parallel spo13Δ (REE3237 × REE3236) meiotic time course experiment were used as a negative control (data not shown).
Sporulation phenotypes of spo13-23. Graph showing production of dyads (solid bars) and tetrads (open bars) in Rec+ diploids, Rec− (spo11) diploids, and Rec+ haploids in SPO13, spo13-Δ4, and spo13-23 strains listed in Table 1. Spore viability in these strains was as follows. Rec+ diploids: SPO13 (96%), spo13-Δ4 (40%), spo13-23 (93%); Rec− (spo11) diploids: SPO13 (>2%), spo13-Δ4 (89%), spo13-23 (54%); loids: SPO13 (ND), spo13-Δ4 (53%), spo13-23 (54%).
In previous studies of the spo13 phenotype, individual chromosomes were often seen to exhibit aberrant behavior, in which one homolog segregates equationally and the other reductionally (sisters together), resulting in one spore containing three chromatids and the other spore containing one chromatid for that chromosome (Klapholz and Esposito 1980b). Aberrant segregation was similarly observed in some dyads in this study. For the three heterozygous centromere-linked markers used in this analysis, dyads were seen in which two of the markers segregated 2+:0− as expected for equational segregation (both spores +/−), and the other segregated 1+:1− consistent with either reductional (one spore +/+ and the other −/−) or aberrant (one spore +/+/− and the other −) segregation. Genetic analysis of wild-type spore clones from representative dyads was performed to distinguish among these latter possibilities (see materials and methods). For each dyad tested in all strains, aberrant segregation was found to be the cause of the 1+:1− dyad. Levels of aberrant segregation for the spo13 null were consistent with previous observations (~11% in SPO11 spo13Δ mutants and ~1% in spo11 spo13Δ; Klapholz and Esposito 1980b). Aberrant segregation in spo13-23 Rec− diploids (2%) is similar to that seen in the Rec− spo13Δ null. It should be noted that these are minimum estimates of aberrant segregation since the frequency of this event can be measured only in viable spores.
Sporulation of spo13-23 when recombination and synapsis are reduced. Graph showing production of dyads (solid bars) and tetrads (open bars) in red1, mek1, msh4, and msh5 diploids in SPO13, spo13-Δ4, and spo13-23 strains listed in Table 1. Spore viability in these Rec− diploid strains was as follows: red1: SPO13 (7%), spo13-Δ4 (83%), spo13-23 (80%); mek1: SPO13 (8%), spo13-Δ4 (85%), spo13-23 (74%); msh4: SPO13 (83%), spo13-Δ4 (60%), spo13-23 (54%); msh5: SPO13 (39%), spo13-Δ4 (85%), spo13-23 (66%).
Full levels of chromosome synapsis and crossing over are needed for two-division meiosis in spo13-23 mutants: The analysis described above, demonstrating that the two-division meiosis in spo13-23 mutants is dependent on recombination, utilized the severe Rec− mutant spo11Δ, which does not form meiotic double-strand breaks or undergo meiotic recombination (Klapholz and Esposito 1982; Klapholzet al. 1985; Bortset al. 1986; Girouxet al. 1989; Bergeratet al. 1997; Keeneyet al. 1997). To determine whether full levels of recombination and synapsis are necessary to promote reductional segregation in spo13-23 strains, a number of other Rec− mutants that affect later stages of the recombination process were examined, including red1, mek1, msh4, and msh5.
The red1 and mek1 mutants have either no or defective synaptonemal complex (SC), reduced levels of meiotic recombination, and produce mature tetrads with low spore viability, resulting from missegregation during reductional division (Rockmill and Roeder 1990, 1991; Leem and Ogawa 1992; Naget al. 1995; Mao-Draayeret al. 1996; Schwacha and Kleckner 1997; Xuet al. 1997; de los Santos and Hollingsworth 1999). Like spo11 double mutants, both red1 spo13-23 and mek1 spo13-23 execute single-division meiosis and produce only dyads (Figure 6). Spore viability of these dyads (80 and 74%, respectively) is similar to spo13 null double mutants (83 and 85%, respectively), suggesting that their single equational division is reasonably accurate. These results indicate that the partial recombination activity, including formation and resolution of double-strand breaks, formation of interhomolog crossovers, and partial assembly of tripartite SC structures (particularly in mek1 mutants), is not sufficient to promote reductional division when SPO13 levels are reduced (Figure 6).
In contrast to the other Rec− mutants examined, the msh4 and msh5 mutants have near normal SCs and gene conversion. They exhibit defects at later stages of meiosis in resolution of recombination intermediates, resulting in at least a twofold reduction in crossing over in a number of intervals and a moderate level of MI nondisjunction and reduced spore viability (Ross-Macdonald and Roeder 1994; Hollingsworthet al. 1995; Pochartet al. 1997). Significantly, both msh4 spo13-23 and msh5 spo13-23 double mutant diploids produce predominantly dyads (Figure 6) with spore viabilities of 60 and 66%, respectively. These values are only moderately lower than those observed for the msh4 and msh5 spo13-Δ4 double mutants, 83 and 85%, respectively. The fact that dyads rather than tetrads are produced, even in the presence of normal gene conversion and synaptonemal complex, suggests that near wild-type crossing over between homologs is necessary to compensate for reduced SPO13 function. Why is this the case? One possibility is that even a modest reduction in crossing over eliminates sisters together reductional segregation and that this leads to equational segregation and dyad production when Spo13 is limiting. Alternatively, reductional chromosome behavior of some, but not all, chromosomes may still occur, but not at a level sufficient to effect the switch from dyads to tetrads.
To distinguish between these possibilities, the frequency of either aberrant or reductional behavior was further examined in msh4 mutants using centromere-proximal markers on three independent chromosomes (III, IV, and V), as previously described. Strikingly, the level of aberrant or reductional behavior in msh4 spo13-23 mutants is substantially higher than in msh4 spo13-Δ4 (55 vs. 11% per chromosome per meiosis; Table 3). Reductional division of chromosome III was also monitored using the MAT locus (detected by dyads with one MATa/a spore and one MATα/α spore). In this case, msh4 spo13-23 dyads exhibit 35% reductional division for chromosome III compared to <2% for msh4 spo13-Δ4 (Table 3). These results demonstrate that despite the relatively high frequency of reductional behavior occurring in msh4 spo13-23 mutants, this level is apparently not sufficient to trigger the dyad to tetrad switch. This raises two interesting questions of how many chromosomes are required to segregate reductionally to trigger two meiotic divisions in spo13-23 mutants and how is this monitored by the cell (see discussion).
Other spo13 mutations located in the coding region result in a phenotype similar to spo13-23: To determine whether other alleles have the same phenotype as spo13-23, two additional mutations known to partially complement a spo13Δ meiosis, spo13-9 and spo13-10 (R. McCarroll, unpublished results), were integrated into the genomic locus and examined in Rec+ and Rec− diploids and haploids during sporulation. Both spo13-9 and spo13-10 have the same general phenotype as spo13-23, although spo13-9 appears to be a slightly weaker (less functional) allele. In all cases, reductional division is dependent on the presence of recombining homologs (Figure 7B). The spo13-9 and spo13-10 alleles were sequenced and the mutations were found to reside in the SPO13 open reading frame (Figure 7A). spo13-9 contains a single point mutation (C to T), which changes a glutamine to stop codon, predicted to eliminate the last 72 amino acids of the 291-amino acid protein. Since this alteration allows partial function, the C-terminal portion of Spo13 does not appear to be absolutely essential for function. spo13-10 contains a single point mutation (C to T), which results in a proline to alanine change at amino acid 136. These results demonstrate that lesions in the coding region similar to a promoter mutant produce a “reduced function” spo13 phenotype that can be compensated for by recombination.
Chromosome segregation in msh4 spo13 mutants
DISCUSSION
To achieve reductional segregation, in which homologs and not sisters separate at MI, cells must (1) keep sister centromeres together and (2) direct segregation of homologous chromosomes to opposite poles. The faithful separation of homologs away from each other will be referred to as “accurate homolog disjunction” and two sister chromatids segregating to the same pole will be referred to as “reductional chromosome behavior.” In this study we define a new role for recombination in MI segregation. In addition to its classically known function in directing accurate homolog disjunction, we show here that it also promotes reductional chromosome behavior. This conclusion is based on the finding that recombination can compensate for reduced function of SPO13, a gene known to regulate reductional chromosome behavior in meiosis.
Location and phenotypes of spo13-9 and spo13-10 alleles. (A) The spo13-9 mutation leads to a glutamine to stop change at amino acid 220. The spo13-10 mutation leads to a proline to alanine change at amino acid 136. (B) Graph showing production of dyads (filled bars) and tetrads (open bars) in Rec+ diploids, Rec− (spo11) diploids, and Rec+ haploids in SPO13, spo13-Δ4, spo13-9, spo13-10, and spo13-23 strains listed in Table 1.
The roles of SPO13 and recombining homologous chromosomes in reductional segregation. SPO13 is thought to promote reductional division by delaying the onset of nuclear division until sister chromatid cohesion/coorientation is properly established. Recombination brings homologous chromosomes together to ensure they segregate accurately from each other during MI. This model proposes that recombination between homologous chromosomes also promotes segregation of sisters to the same pole. Two possible pathways for this activity are shown with dashed lines. First, recombining chromosomes may act directly by promoting sister chromatid cohesion/coorientation. Alternatively, recombining chromosomes may act more indirectly, delaying nuclear division until other factors act to stabilize sister cohesion between sisters for their separation to the same pole at MI.
Our present work provides an explanation for several prior results. For example, aberrant segregation (one chromosome reductional, one chromosome equational for a given homolog) in spo13 mutants was shown to occur in Rec+ but at greatly reduced levels in Rec− strains (Klapholz and Esposito 1980b; Esposito and Klapholz 1981). This result can now be understood in the light of our current findings. In the absence of spo13, recombination causes some cohesion/coorientation of sister pairs leading to reductional chromosome behavior seen as aberrant segregation at the meiotic division.
How does recombination partially substitute for the reduction function of SPO13? A model for SPO13 and recombinational control of reductional chromosome behavior at MI is shown (Figure 8). According to this model, SPO13 ensures that sister chromatids segregate to the same pole at the first meiotic division by directly or indirectly promoting cohesion and/or coorientation of sister centromeres. As described earlier, it has been proposed that SPO13 delays nuclear division until sister centromeres establish stable cohesion, after which the division delay is released and progression through M phase proceeds. Independently, recombining chromosomes align homologs for their separation from one another via the formation of chiasmata that provide necessary tension for proper microtubule attachment, thereby directing accurate homolog disjunction. Two possibilities are proposed (dashed lines) for how recombining homologs may also contribute to the pathway that directs sister centromeres to the same pole. In one, recombination acts in parallel to SPO13, providing a signal to delay division and to allow time for stable sister centromere association throughout the nucleus. In the other, recombination acts more directly (in cis) by physically constraining sister centromeres to coorient to the same pole. Although the precise mechanism by which recombination acts to promote reductional chromosome behavior is not yet clear, our recent work supports the view that a diffusible signal is involved. This is based on the demonstration that a single pair of recombining homologous chromosomes (in a haploid with either two copies of chromosome III or a homologous pair of artificial chromosomes) can promote reductional behavior of other chromosomes in the nucleus (L. H. Rutkowski and R. E. Esposito, unpublished results). Consistent with the results of the study described here, the level of reductional segregation in these strains is not sufficient to trigger two meiotic divisions.
As discussed above, recombination can promote reductional chromosome behavior when SPO13 function is reduced. However, when SPO13 is absent, although it does promote some reductional chromosome behavior (e.g., aberrant segregation), it is not sufficient to trigger reductional segregation throughout the whole nucleus. This suggests that SPO13 is required for the major pathway promoting sister centromere cohesion and that recombination plays an important, but secondary, role.
Does recombination act to delay meiotic division, similar to the proposed behavior of SPO13? A number of studies have provided evidence for some recombinational control of the timing of the meiotic divisions. For example, MI segregation in specific Rec− null mutants defective in double-strand break formation (spo11, rec104, rec114, rec102, and rad50) has been reported to occur significantly earlier than in wild-type strains (Klapholzet al. 1985; Galbraithet al. 1997; Jiaoet al. 1999). These results suggest that initiation of recombination normally creates a transient delay in the onset of MI, presumably allowing time for completion of recombination. In addition, dependent on strain background, mutants in other Rec genes that normally function after double-strand break formation (e.g., DMC1, ZIP1, and HOP2) arrest in pachytene (Bishopet al. 1992; Symet al. 1993; Leuet al. 1998). In these mutants, the presence of unresolved recombination intermediates acts through a pachytene checkpoint to prevent the onset of meiosis I. The meiotic arrest requires the mitotic checkpoint genes RAD17, RAD24, and MEC1 in dmc1 mutants (Lydallet al. 1996), and PCH2 in both zip1 and dmc1 mutants (San-Segundo and Roeder 1999). Phosphorylation of the CDC28 cyclin-dependent kinase by another checkpoint gene, SWE1, is also required for the pachytene checkpoint arrest in dmc1, zip1, and hop2 mutants (Leu and Roeder 1999). These studies collectively suggest that the pachytene delay or arrest caused by double-strand breaks and the presence of unresolved recombination intermediates may play a similar role to SPO13 in delaying MI and providing time for stabilization of sister centromere cohesion.
Strikingly, studies of the msh4 and msh5 mutants indicate that both pathways for the action of recombination depicted in the model must depend not only on the initiation of exchange, but also on completed crossover events, presumably chiasmata. The only major defect in these mutants is a reduction in the levels of crossovers, which vary from near normal in some regions to only 30% of wild type in other regions (Ross-Macdonald and Roeder 1994; Hollingsworthet al. 1995). If the MI-delaying function of recombination, described above, is responsible for suppressing the spo13-23 phenotype, then the fact that msh4 and msh5 are required for the suppression suggests that even the resolution process can trigger MI delay. It is now known that the level of crossovers per chromosome is exquisitely regulated, with small chromosomes having a significantly higher frequency of recombination per kilobase as compared to larger ones (Kaback et al. 1989, 1999), ensuring at least one crossover per chromosome to promote accurate reductional disjunction. Assuming that at least one crossover event is also needed for an individual chromosome to segregate with sisters together (reductional chromosome behavior) when Spo13 is limiting, then an alternative possibility is that the msh4 and msh5 reduction in reciprocal exchange leaves some chromosomes with no chiasmata. Thus, even a moderate reduction in crossing over in msh4 and msh5 mutants (~30% of wild type) can have a highly significant effect, producing chromosomes that segregate equationally.
The intriguing finding that msh4 spo13-23 mutants exhibit significant levels of reductional segregation, yet still produce predominantly dyads, raises the question of how many chromosomes must segregate in an accurate reductional division for a second meiotic division to be triggered. If results observed for the three chromosomes whose segregation was tested in msh4 spo13-23 sporulation are extrapolated to the entire genome, we would predict approximately six chromosomes to segregate reductionally, approximately three aberrantly, and the remaining approximately seven equationally in each meiotic nucleus undergoing dyad formation (see Table 3, footnote c). This implies that more than half the genome must exhibit reductional chromosome behavior for two meiotic divisions to occur when Spo13 is limiting. Alternatively, even one chromosome segregating aberrantly might be sufficient to trigger a checkpoint control preventing two meiotic divisions. The precise mechanism by which the level of reductional vs. equational segregation is monitored remains to be determined. Recent evidence suggests that the MAD2 gene may play a role in this monitoring mechanism since in the absence of Mad2, spo13Δ diploids complete two meiotic disivions (M. A. Shonn, R. McCarroll and A. Murray, personal communication).
Another interesting question is whether crossover position influences the level of reductional segregation and hence the switch from dyads to tetrads when Spo13 is limiting. Using artificial chromosomes, it has been reported that crossing over near the centromere is, in fact, more effective at ensuring accurate homolog disjunction than recombination at other chromosomal locations (Rosset al. 1996). However, it is not yet known whether the position of crossing over is similarly important for recombining homologs to promote reductional chromosome behavior independent of accurate disjunction.
How do SPO13 and sister cohesion factors direct meiotic division? As discussed earlier, SPO13 is thought to promote sister centromere interactions needed for reductional segregation. A key feature of spo13 meiosis is that while sister centromeres separate at the single meiotic division, chromatids do not segregate randomly, but instead disjoin from one another in a single, largely equational division (Klapholz and Esposito 1980b). The fact that sister chromatids separate from one another with fairly high fidelity implies the presence of SPO13-independent sister chromatid arm associations that prevent random segregation. Accordingly, since the wild-type Spo13 protein is presumed to be specifically required for centromere cohesion, independent factor(s) must control arm cohesion.
In previous sections, we discussed in detail a model for SPO13 control of centromere cohesion based on the indirect division delay. A direct role for SPO13 in promoting the sister chromatid cohesion necessary for reductional division was thought to be unlikely, since reductional segregation can occur in the absence of SPO13. For example, spo13 null mutants exhibit reductional division in certain strain backgrounds and when sporulated under conditions that slow meiotic division (Hollingsworth and Byers 1989; Hugerat and Simchen 1993; McCarroll and Esposito 1994). However, since the present study revealed that SPO13 and recombining homologous chromosomes may have redundant roles in promoting reductional chromosome behavior, the issue of whether SPO13 may also act more directly in centromere cohesion needs to be reexamined. For example, the presence of reductional division in the absence of SPO13, noted above, could be due to recombination. This appears to be the case. For example, the single, largely reductional division seen in spo13 null mutants in some backgrounds is recombination dependent (Hollingsworth and Byers 1989). In addition, preliminary experiments suggest that suppression of the spo13 mutant phenotype by sporulation at low temperature also depends on recombination (L. H. Rutkowski and R. E. Esposito, unpublished observations). Recent studies demonstrating a requirement for SPO13 in localization of the meiotic cohesin Rec8 during the meiotic divisions are consistent with either a direct and/or an indirect role for SPO13 in centromere cohesion (Kleinet al. 1999).
What is the relationship of spo13 to other mutants that exhibit a single equational division during meiosis? The current work included an extensive search for genomic mutations allowing haploids that express both mating type alleles to enter meiosis and produce viable spores resulting from a single equational segregation. A total of 10 new mutations in SPO13 were isolated, but no mutations in other genes were uncovered. Thus, it was concluded that spo13 mutations are likely unique in their ability to allow haploids to complete meiosis and produce viable products by eliminating reductional segregation. Mutations in spo13 also appear to be unique in their ability to rescue Rec− mutants from lethality. However, spo13 is not novel in bypassing reductional segregation (without disrupting either recombination or other events in sporulation). spo12 and slk19 mutants also enter meiosis and produce dyads with diploid spores resulting from a single meiotic division in which most chromosomes segregate equationally (Klapholz and Esposito 1980b; W. Saunders, personal communication). In contrast to spo13, they require recombining homologs to produce viable meiotic products. These findings suggest that sister centromeres are initially cohered and that the wild-type alleles of these genes act after the point at which recombining chromosomes (chiasmata) are required for proper spindle microtubule attachment. Since these mutants eventually undergo a single equational division, they must bi-orient sister centromeres to face opposite poles for proper attachment, enabling separation of sister chromatids at MII. The fact that recombining chromosomes are not required for spo13 equational division implies that sister centromeres must become bi-oriented in this mutant prior to the point at which chiasmata are normally required for proper attachment. Accordingly, we postulate that SPO13 acts early, promoting sister centromere cohesion/coorientation, and that SPO12 and SLK19 act later, after initial sister centromere cohesion, perhaps in promoting proper spindle attachment. In fact, three lines of experimental evidence support this idea. First, SPO13 is transcriptionally induced in meiosis before SPO12. SPO13 is induced as part of the early meiotic expression class while SPO12, which is already transcribed in mitosis (Parkes and Johnston 1992; Choet al. 1998), is further upregulated as part of the middle meiotic expression group (S. Frackman and R. E. Esposito, unpublished results; Malavasic and Elder 1990; Chuet al. 1998). Second, SPO13 is genetically epistatic to SPO12. spo12 spo13 double mutants produce viable spores in both recombination-defective (Esposito and Klapholz 1981) and haploid meiosis (Wagstaffet al. 1982). Third, recent data support a role for SLK19 (with mutant behavior similar to spo12) in spindle microtubule stabilization (Zenget al. 1999), which may promote attachment of chromosomes to the spindle. In contrast to the above, recent work has shown that a high-copy SPO13 plasmid can partially restore tetrad production to spo12 mutants (and vice versa; Grether and Herskowitz 1999; B. Washburn, L. H. Rutkowski and R. E. Esposito, unpublished results), suggesting that each protein may play multiple roles in both centromere cohesion and spindle attachment that partially overlap with one another. Further studies on the nature of the interactions between SPO13, SPO12, and SLK19 should help elucidate the functional relationship between cohesion and spindle attachment.
What promoter elements are important for meiosis-specific transcription of SPO13? This work identified a novel allele, spo13-23, with a mutation in the 5′ untranslated region that reduces expression of the SPO13 mRNA to about half of wild-type meiotic levels. The location of the mutation and its effect on mRNA levels are interesting in light of previous work on the cis-elements needed for SPO13 expression and suggest that spo13-23 may help to define a new SPO13 promoter element. Previously, our laboratory identified a 60-bp region upstream of SPO13 from −80 to −140 needed for full levels of meiosis-specific expression of a spo13-lacZ fusion (Buckinghamet al. 1990). This region contains the regulatory sequence URS1, which is bound by Ume6, a C6 zinc cluster protein that controls both mitotic repression and meiotic activation of SPO13 transcription (Strichet al. 1994; Andersonet al. 1995; Steber and Esposito 1995). Although the SPO13 URS1 is sufficient for mitotic repression, it is not sufficient for full levels of meiotic activation. Since the SPO13 promoter lacks the early meiotic activation sequence, UASH, first identified upstream of HOP1 (Vershonet al. 1992), it has been thought that an additional meiotic activation sequence must be located within the 60-bp regulatory region (L. Buckingham and R. E. Esposito, unpublished results). The G to A (−129) mutation responsible for spo13-23 reduced expression may prove useful in defining the promoter element(s) as it lies within the expected region upstream of URS1.
Acknowledgments
We thank G. S. Roeder and N. Kleckner for the gifts of plasmids, and members of the Esposito laboratory for helpful discussions. This work was supported by National Institutes of Health training grant GM07183 (L.H.R.) and research grant RO1-GM29182 (R.E.E.).
Footnotes
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Communicating editor: P. J. Pukkila
- Received December 22, 1999.
- Accepted April 18, 2000.
- Copyright © 2000 by the Genetics Society of America