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A Publication of The Genetics Society of America

Genetics Supplementary Material -- 2007

Supplementary material related to the following articles is available online:

James K. Biedler, Hongguang Shao, and Zhijian Tu

Evolution and Horizontal Transfer of a DD37E DNA Transposon in Mosquitoes
Genetics 2007; 177(4): 2553-2558 [Abstract] [Full Text]  

Article supplement(s): [Data Supplement]

Maja Tarailo, Sanja Tarailo, and Ann M. Rose

Synthetic Lethal Interactions Identify Phenotypic "Interologs" of the Spindle Assembly Checkpoint Components
Genetics 2007; 177(4): 2525-2530 [Abstract] [Full Text]  

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Adam G. Evertts, Christopher Plymire, Nancy L. Craig, and Henry L. Levin

The Hermes Transposon of Musca domestica Is an Efficient Tool for the Mutagenesis of Schizosaccharomyces pombe
Genetics 2007; 177(4): 2519-2523 [Abstract] [Full Text]  

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Mark W. Kankel, Gregory D. Hurlbut, Geeta Upadhyay, Vijay Yajnik, Barry Yedvobnick, and Spyros Artavanis-Tsakonas

Investigating the Genetic Circuitry of Mastermind in Drosophila, a Notch Signal Effector
Genetics 2007; 177(4): 2493-2505 [Abstract] [Full Text]  

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Cuixia Chen, Qingyi Yu, Shaobin Hou, Yingjun Li, Moriah Eustice, Rachel L. Skelton, Olivia Veatch, Rachel E. Herdes, Lauren Diebold, Jimmy Saw, Yun Feng, Wubin Qian, Lee Bynum, Lei Wang, Paul H. Moore, Robert E. Paull, Maqsudul Alam, and Ray Ming

Construction of a Sequence-Tagged High-Density Genetic Map of Papaya for Comparative Structural and Evolutionary Genomics in Brassicales
Genetics 2007; 177(4): 2481-2491 [Abstract] [Full Text]  

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Maire K. Kelly, Peter A. Jauert, Linnea E. Jensen, Christine L. Chan, Chinh S. Truong, and David T. Kirkpatrick

Zinc Regulates the Stability of Repetitive Minisatellite DNA Tracts During Stationary Phase
Genetics 2007; 177(4): 2469-2479 [Abstract] [Full Text]  

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Carmen Bouza, Miguel Hermida, Belén G. Pardo, Carlos Fernández, Gloria G. Fortes, Jaime Castro, Laura Sánchez, Pablo Presa, Montse Pérez, Andrés Sanjuán, Alejandro de Carlos, José Antonio Álvarez-Dios, Susana Ezcurra, Rosa M. Cal, Francesc Piferrer, and Paulino Martínez

A Microsatellite Genetic Map of the Turbot (Scophthalmus maximus)
Genetics 2007; 177(4): 2457-2467 [Abstract] [Full Text]  

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Jennifer K. Jeffress, Scott L. Page, Suzanne M. Royer, Elizabeth D. Belden, Justin P. Blumenstiel, Lorinda K. Anderson, and R. Scott Hawley

The Formation of the Central Element of the Synaptonemal Complex May Occur by Multiple Mechanisms: The Roles of the N- and C-Terminal Domains of the Drosophila C(3)G Protein in Mediating Synapsis and Recombination
Genetics 2007; 177(4): 2445-2456 [Abstract] [Full Text]  

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Y. Long, J. Shi, D. Qiu, R. Li, C. Zhang, J. Wang, J. Hou, J. Zhao, L. Shi, Beom-Seok Park, S. R. Choi, Y. P. Lim, and J. Meng

Flowering Time Quantitative Trait Loci Analysis of Oilseed Brassica in Multiple Environments and Genomewide Alignment with Arabidopsis
Genetics 2007; 177(4): 2433-2444 [Abstract] [Full Text]  

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Tetsuaki Kimura, Atsuko Shimada, Noriyoshi Sakai, Hiroshi Mitani, Kiyoshi Naruse, Hiroyuki Takeda, Hidetoshi Inoko, Gen Tamiya, and Minori Shinya

Genetic Analysis of Craniofacial Traits in the Medaka
Genetics 2007; 177(4): 2379-2388 [Abstract] [Full Text]  

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Allison Weber, Richard M. Clark, Laura Vaughn, José de Jesús Sánchez-Gonzalez, Jianming Yu, Brian S. Yandell, Peter Bradbury, and John Doebley

Major Regulatory Genes in Maize Contribute to Standing Variation in Teosinte (Zea mays ssp. parviglumis)
Genetics 2007; 177(4): 2349-2359 [Abstract] [Full Text]  

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Tae-Sung Kim, Benjamin A. Logsdon, Sohyun Park, Jason G. Mezey, and Kwangwon Lee

Quantitative Trait Loci for the Circadian Clock in Neurospora crassa
Genetics 2007; 177(4): 2335-2347 [Abstract] [Full Text]  

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Gaëtan Burgio, Marek Szatanik, Jean-Louis Guénet, Maria-Rosa Arnau, Jean-Jacques Panthier, and Xavier Montagutelli

Interspecific Recombinant Congenic Strains Between C57BL/6 and Mice of the Mus spretus Species: A Powerful Tool to Dissect Genetic Control of Complex Traits
Genetics 2007; 177(4): 2321-2333 [Abstract] [Full Text]  

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Charles Hall and Fred S. Dietrich

The Reacquisition of Biotin Prototrophy in Saccharomyces cerevisiae Involved Horizontal Gene Transfer, Gene Duplication and Gene Clustering
Genetics 2007; 177(4): 2293-2307 [Abstract] [Full Text]  

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Tovah Salcedo, Armando Geraldes, and Michael W. Nachman

Nucleotide Variation in Wild and Inbred Mice
Genetics 2007; 177(4): 2277-2291 [Abstract] [Full Text]  

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Runchun Jing, Richard Johnson, Andrea Seres, Gyorgy Kiss, Mike J. Ambrose, Maggie R. Knox, T. H. Noel Ellis, and Andrew J. Flavell

Gene-Based Sequence Diversity Analysis of Field Pea (Pisum)
Genetics 2007; 177(4): 2263-2275 [Abstract] [Full Text]  

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Peter D. Keightley and Adam Eyre-Walker

Joint Inference of the Distribution of Fitness Effects of Deleterious Mutations and Population Demography Based on Nucleotide Polymorphism Frequencies
Genetics 2007; 177(4): 2251-2261 [Abstract] [Full Text]  

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Kristie A. Mather, Ana L. Caicedo, Nicholas R. Polato, Kenneth M. Olsen, Susan McCouch, and Michael D. Purugganan

The Extent of Linkage Disequilibrium in Rice (Oryza sativa L.)
Genetics 2007; 177(4): 2223-2232 [Abstract] [Full Text]  

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Daniel Garrigan, Sarah B. Kingan, Maya M. Pilkington, Jason A. Wilder, Murray P. Cox, Himla Soodyall, Beverly Strassmann, Giovanni Destro-Bisol, Peter de Knijff, Andrea Novelletto, Jonathan Friedlaender, and Michael F. Hammer

Inferring Human Population Sizes, Divergence Times and Rates of Gene Flow From Mitochondrial, X and Y Chromosome Resequencing Data
Genetics 2007; 177(4): 2195-2207 [Abstract] [Full Text]  

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David Wheeler and Ed Newbigin

Expression of 10 S-Class SLF-like Genes in Nicotiana alata Pollen and Its Implications for Understanding the Pollen Factor of the S Locus
Genetics 2007; 177(4): 2171-2180 [Abstract] [Full Text]  

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Cristina Andreescu, Santiago Avendano, Stewart R. Brown, Abebe Hassen, Susan J. Lamont, and Jack C. M. Dekkers

Linkage Disequilibrium in Related Breeding Lines of Chickens
Genetics 2007; 177(4): 2161-2169 [Abstract] [Full Text]  

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Daniel Pinkel

Analytical Description of Mutational Effects in Competing Asexual Populations
Genetics 2007; 177(4): 2135-2149 [Abstract] [Full Text]  

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Stéphane De Mita, Joëlle Ronfort, Heather I. McKhann, Charles Poncet, Redouane El Malki, and Thomas Bataillon

Investigation of the Demographic and Selective Forces Shaping the Nucleotide Diversity of Genes Involved in Nod Factor Signaling in Medicago truncatula
Genetics 2007; 177(4): 2123-2133 [Abstract] [Full Text]  

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Anahid E. Powell, Matthew L. Nicotra, Maria A. Moreno, Fadi G. Lakkis, Stephen L. Dellaporta, and Leo W. Buss

Differential Effect of Allorecognition Loci on Phenotype in Hydractinia symbiolongicarpus (Cnidaria: Hydrozoa)
Genetics 2007; 177(4): 2101-2107 [Abstract] [Full Text]  

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J. Michael Macpherson, Guy Sella, Jerel C. Davis, and Dmitri A. Petrov

Genomewide Spatial Correspondence Between Nonsynonymous Divergence and Neutral Polymorphism Reveals Extensive Adaptation in Drosophila
Genetics 2007; 177(4): 2083-2099 [Abstract] [Full Text]  

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Keita Tanaka, Yusuke Takehana, Kiyoshi Naruse, Satoshi Hamaguchi, and Mitsuru Sakaizumi

Evidence for Different Origins of Sex Chromosomes in Closely Related Oryzias Fishes: Substitution of the Master Sex-Determining Gene
Genetics 2007; 177(4): 2075-2081 [Abstract] [Full Text]  

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Min-Ho Lee, Mitsue Ohmachi, Swathi Arur, Sudhir Nayak, Ross Francis, Diane Church, Eric Lambie, and Tim Schedl

Multiple Functions and Dynamic Activation of MPK-1 Extracellular Signal-Regulated Kinase Signaling in Caenorhabditis elegans Germline Development
Genetics 2007; 177(4): 2039-2062 [Abstract] [Full Text]  

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Akitsugu Sato, Kazuto Nakada, Hiroshi Shitara, Atsuko Kasahara, Hiromichi Yonekawa, and Jun-Ichi Hayashi

Deletion-Mutant mtDNA Increases in Somatic Tissues but Decreases in Female Germ Cells With Age
Genetics 2007; 177(4): 2031-2037 [Abstract] [Full Text]  

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Michael S. Chae, Cheryl E. Nargang, Ian A. Cleary, Colin C. Lin, Andrea T. Todd, and Frank E. Nargang

Two Zinc-Cluster Transcription Factors Control Induction of Alternative Oxidase in Neurospora crassa
Genetics 2007; 177(4): 1997-2006 [Abstract] [Full Text]  

Article supplement(s): [Data Supplement]

Yan Zhuang and Keith L. Adams

Extensive Allelic Variation in Gene Expression in Populus F₁ Hybrids
Genetics 2007; 177(4): 1987-1996 [Abstract] [Full Text]  

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Khalil Kashkush and Vadim Khasdan

Large-Scale Survey of Cytosine Methylation of Retrotransposons and the Impact of Readout Transcription From Long Terminal Repeats on Expression of Adjacent Rice Genes
Genetics 2007; 177(4): 1975-1985 [Abstract] [Full Text]  

Article supplement(s): [Supplement to Kashkush and Khasdan, 2007]

Carole Seum, Séverine Bontron, Emanuela Reo, Marion Delattre, and Pierre Spierer

Drosophila G9a Is a Nonessential Gene
Genetics 2007; 177(3): 1955-1957 [Abstract] [Full Text]  

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Matthew W. Hahn, Jeffery P. Demuth, and Sang-Gook Han

Accelerated Rate of Gene Gain and Loss in Primates
Genetics 2007; 177(3): 1941-1949 [Abstract] [Full Text]  

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William H. Briggs, Michael D. McMullen, Brandon S. Gaut, and John Doebley

Linkage Mapping of Domestication Loci in a Large Maize–Teosinte Backcross Resource
Genetics 2007; 177(3): 1915-1928 [Abstract] [Full Text]  

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José Crossa, Juan Burgueño, Susanne Dreisigacker, Mateo Vargas, Sybil A. Herrera-Foessel, Morten Lillemo, Ravi P. Singh, Richard Trethowan, Marilyn Warburton, Jorge Franco, Matthew Reynolds, Jonathan H. Crouch, and Rodomiro Ortiz

Association Analysis of Historical Bread Wheat Germplasm Using Additive Genetic Covariance of Relatives and Population Structure
Genetics 2007; 177(3): 1889-1913 [Abstract] [Full Text]  

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Albrecht E. Melchinger, Hans-Peter Piepho, H. Friedrich Utz, Jasmina Muminovic, Thilo Wegenast, Otto Törjék, Thomas Altmann, and Barbara Kusterer

Genetic Basis of Heterosis for Growth-Related Traits in Arabidopsis Investigated by Testcross Progenies of Near-Isogenic Lines Reveals a Significant Role of Epistasis
Genetics 2007; 177(3): 1827-1837 [Abstract] [Full Text]  

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A. E. Melchinger, H. F. Utz, H.-P. Piepho, Z.-B. Zeng, and C. C. Schön

The Role of Epistasis in the Manifestation of Heterosis: A Systems-Oriented Approach
Genetics 2007; 177(3): 1815-1825 [Abstract] [Full Text]  

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Aurélien Tellier and James K. M. Brown

Polymorphism in Multilocus Host–Parasite Coevolutionary Interactions
Genetics 2007; 177(3): 1777-1790 [Abstract] [Full Text]  

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Daisuke Saisho and Michael D. Purugganan

Molecular Phylogeography of Domesticated Barley Traces Expansion of Agriculture in the Old World
Genetics 2007; 177(3): 1765-1776 [Abstract] [Full Text]  

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Xiyin Wang, Haibao Tang, John E. Bowers, Frank A. Feltus, and Andrew H. Paterson

Extensive Concerted Evolution of Rice Paralogs and the Road to Regaining Independence
Genetics 2007; 177(3): 1753-1763 [Abstract] [Full Text]  

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Soochin Cho, Zachary Y. Huang, and Jianzhi Zhang

Sex-Specific Splicing of the Honeybee doublesex Gene Reveals 300 Million Years of Evolution at the Bottom of the Insect Sex-Determination Pathway
Genetics 2007; 177(3): 1733-1741 [Abstract] [Full Text]  

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Tanja Pyhäjärvi, M. Rosario García-Gil, Timo Knürr, Merja Mikkonen, Witold Wachowiak, and Outi Savolainen

Demographic History Has Influenced Nucleotide Diversity in European Pinus sylvestris Populations
Genetics 2007; 177(3): 1713-1724 [Abstract] [Full Text]  

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Satsuki Nishizawa, Tetsuo Mikami, and Tomohiko Kubo

Mitochondrial DNA Phylogeny of Cultivated and Wild Beets: Relationships Among Cytoplasmic Male-Sterility-Inducing and Nonsterilizing Cytoplasms
Genetics 2007; 177(3): 1703-1712 [Abstract] [Full Text]  

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Céline N. Martineau, Jean-Marie Beckerich, and Mehdi Kabani

Flo11p-Independent Control of "Mat" Formation by Hsp70 Molecular Chaperones and Nucleotide Exchange Factors in Yeast
Genetics 2007; 177(3): 1679-1689 [Abstract] [Full Text]  

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Laurent Menut, Thomas Vaccari, Heather Dionne, Joseph Hill, Geena Wu, and David Bilder

A Mosaic Genetic Screen for Drosophila Neoplastic Tumor Suppressor Genes Based on Defective Pupation
Genetics 2007; 177(3): 1667-1677 [Abstract] [Full Text]  

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Ping Wang, Richard F. Lyman, Svetlana A. Shabalina, Trudy F. C. Mackay, and Robert R. H. Anholt

Association of Polymorphisms in Odorant-Binding Protein Genes With Variation in Olfactory Response to Benzaldehyde in Drosophila
Genetics 2007; 177(3): 1655-1665 [Abstract] [Full Text]  

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Erin Currie, Brian King, Andrea L. Lawrenson, Lena K. Schroeder, Aaron M. Kershner, and Greg J. Hermann

Role of the Caenorhabditis elegans Multidrug Resistance Gene, mrp-4, in Gut Granule Differentiation
Genetics 2007; 177(3): 1569-1582 [Abstract] [Full Text]  

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Ruth Rottscheidt and Bettina Harr

Extensive Additivity of Gene Expression Differentiates Subspecies of the House Mouse
Genetics 2007; 177(3): 1553-1567 [Abstract] [Full Text]  

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Shakil Ahmed, Barbara Dul, Xinxing Qiu, and Nancy C. Walworth

Msc1 Acts Through Histone H2A.Z to Promote Chromosome Stability in Schizosaccharomyces pombe
Genetics 2007; 177(3): 1487-1497 [Abstract] [Full Text]  

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Sheng Sun and Jianping Xu

Genetic Analyses of a Hybrid Cross Between Serotypes A and D Strains of the Human Pathogenic Fungus Cryptococcus neoformans
Genetics 2007; 177(3): 1475-1486 [Abstract] [Full Text]  

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Seung-Won Park, Yool Ie Kang, Joanna G. Sypula, Jiyeon Choi, Hyangyee Oh, and Yongkyu Park

An Evolutionarily Conserved Domain of roX2 RNA Is Sufficient for Induction of H4-Lys16 Acetylation on the Drosophila X Chromosome
Genetics 2007; 177(3): 1429-1437 [Abstract] [Full Text]  

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Mohamed A. F. Noor, David A. Garfield, Stephen W. Schaeffer, and Carlos A. Machado

Divergence Between the Drosophila pseudoobscura and D. persimilis Genome Sequences in Relation to Chromosomal Inversions
Genetics 2007; 177(3): 1417-1428 [Abstract] [Full Text]  

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Carolyn S. McBride, J. Roman Arguello, and Brian C. O'Meara

Five Drosophila Genomes Reveal Nonneutral Evolution and the Signature of Host Specialization in the Chemoreceptor Superfamily
Genetics 2007; 177(3): 1395-1416 [Abstract] [Full Text]  

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Morgan L. Maeder, Benjamin J. Polansky, Bryanne E. Robson, and Deborah A. Eastman

Phylogenetic Footprinting Analysis in the Upstream Regulatory Regions of the Drosophila Enhancer of split Genes
Genetics 2007; 177(3): 1377-1394 [Abstract] [Full Text]  

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Wai Yee Low, Hooi Ling Ng, Craig J. Morton, Michael W. Parker, Philip Batterham, and Charles Robin

Molecular Evolution of Glutathione S-Transferases in the Genus Drosophila
Genetics 2007; 177(3): 1363-1375 [Abstract] [Full Text]  

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Stephanie G. Hudson, Matthew J. Garrett, Joseph W. Carlson, Gos Micklem, Susan E. Celniker, Elliott S. Goldstein, and Stuart J. Newfeld

Phylogenetic and Genomewide Analyses Suggest a Functional Relationship Between kayak, the Drosophila Fos Homolog, and fig, a Predicted Protein Phosphatase 2C Nested Within a kayak Intron
Genetics 2007; 177(3): 1349-1361 [Abstract] [Full Text]  

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Wilfried Haerty, Santosh Jagadeeshan, Rob J. Kulathinal, Alex Wong, Kristipati Ravi Ram, Laura K. Sirot, Lisa Levesque, Carlo G. Artieri, Mariana F. Wolfner, Alberto Civetta, and Rama S. Singh

Evolution in the Fast Lane: Rapidly Evolving Sex-Related Genes in Drosophila
Genetics 2007; 177(3): 1321-1335 [Abstract] [Full Text]  

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Amy L. Evans, Paulina A. Mena, and Bryant F. McAllister

Positive Selection Near an Inversion Breakpoint on the Neo-X Chromosome of Drosophila americana
Genetics 2007; 177(3): 1303-1319 [Abstract] [Full Text]  

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Aya Takahashi, Kuniaki Takahashi, Ryu Ueda, and Toshiyuki Takano-Shimizu

Natural Variation of ebony Gene Controlling Thoracic Pigmentation in Drosophila melanogaster
Genetics 2007; 177(2): 1233-1237 [Abstract] [Full Text]  

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Jianxin Ma, Rod A. Wing, Jeffrey L. Bennetzen, and Scott A. Jackson

Evolutionary History and Positional Shift of a Rice Centromere
Genetics 2007; 177(2): 1217-1220 [Abstract] [Full Text]  

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Darrin P. Reid, Cheryl-Anne Smith, Melissa Rommens, Brian Blanchard, Debbie Martin-Robichaud, and Michael Reith

A Genetic Linkage Map of Atlantic Halibut (Hippoglossus hippoglossus L.)
Genetics 2007; 177(2): 1193-1205 [Abstract] [Full Text]  

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James O. Allen, Christiane M. Fauron, Patrick Minx, Leah Roark, Swetha Oddiraju, Guan Ning Lin, Louis Meyer, Hui Sun, Kyung Kim, Chunyan Wang, Feiyu Du, Dong Xu, Michael Gibson, Jill Cifrese, Sandra W. Clifton, and Kathleen J. Newton

Comparisons Among Two Fertile and Three Male-Sterile Mitochondrial Genomes of Maize
Genetics 2007; 177(2): 1173-1192 [Abstract] [Full Text]  

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Zachary A. Lewis, Anthony L. Shiver, Nicholas Stiffler, Michael R. Miller, Eric A. Johnson, and Eric U. Selker

High-Density Detection of Restriction-Site-Associated DNA Markers for Rapid Mapping of Mutated Loci in Neurospora
Genetics 2007; 177(2): 1163-1171 [Abstract] [Full Text]  

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Jiang I. Wu, M. A. Centilli, Gabriela Vasquez, Susan Young, Jonathan Scolnick, Larissa A. Durfee, Jimmy L. Spearow, Staci D. Schwantz, Gabriela Rennebeck, and Karen Artzt

tint Maps to Mouse Chromosome 6 and May Interact With a Notochordal Enhancer of Brachyury
Genetics 2007; 177(2): 1151-1161 [Abstract] [Full Text]  

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Jeffrey D. Jensen, Vanessa L. Bauer DuMont, Adeline B. Ashmore, Angela Gutierrez, and Charles F. Aquadro

Patterns of Sequence Variability and Divergence at the diminutive Gene Region of Drosophila melanogaster: Complex Patterns Suggest an Ancestral Selective Sweep
Genetics 2007; 177(2): 1071-1085 [Abstract] [Full Text]  

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Mathieu Gautier, Thomas Faraut, Katayoun Moazami-Goudarzi, Vincent Navratil, Mario Foglio, Cécile Grohs, Anne Boland, Jean-Guillaume Garnier, Didier Boichard, G. Mark Lathrop, Ivo G. Gut, and André Eggen

Genetic and Haplotypic Structure in 14 European and African Cattle Breeds
Genetics 2007; 177(2): 1059-1070 [Abstract] [Full Text]  

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Garrick T. Skalski

Joint Estimation of Migration Rate and Effective Population Size Using the Island Model
Genetics 2007; 177(2): 1043-1057 [Abstract] [Full Text]  

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Hitoshi Araki, Hideki Innan, Martin Kreitman, and Joy Bergelson

Molecular Evolution of Pathogenicity-Island Genes in Pseudomonas viridiflava
Genetics 2007; 177(2): 1031-1041 [Abstract] [Full Text]  

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C. Roberge, H. Guderley, and L. Bernatchez

Genomewide Identification of Genes Under Directional Selection: Gene Transcription Q_ST Scan in Diverging Atlantic Salmon Subpopulations
Genetics 2007; 177(2): 1011-1022 [Abstract] [Full Text]  

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Anton P. Bussink, Dave Speijer, Johannes M. F. G. Aerts, and Rolf G. Boot

Evolution of Mammalian Chitinase(-Like) Members of Family 18 Glycosyl Hydrolases
Genetics 2007; 177(2): 959-970 [Abstract] [Full Text]  

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Shohei Takuno, Ryo Fujimoto, Tetsu Sugimura, Keiichi Sato, Shunsuke Okamoto, Shao-Ling Zhang, and Takeshi Nishio

Effects of Recombination on Hitchhiking Diversity in the Brassica Self-incompatibility Locus Complex
Genetics 2007; 177(2): 949-958 [Abstract] [Full Text]  

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Verónica V. Lia, Viviana A. Confalonieri, and Lidia Poggio

B Chromosome Polymorphism in Maize Landraces: Adaptive vs. Demographic Hypothesis of Clinal Variation
Genetics 2007; 177(2): 895-904 [Abstract] [Full Text]  

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J. Gay, S. Myers, and G. McVean

Estimating Meiotic Gene Conversion Rates From Population Genetic Data
Genetics 2007; 177(2): 881-894 [Abstract] [Full Text]  

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Shuichi Kitada, Toshihide Kitakado, and Hirohisa Kishino

Empirical Bayes Inference of Pairwise F_ST and Its Distribution in the Genome
Genetics 2007; 177(2): 861-873 [Abstract] [Full Text]  

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Hansong Deng, Dan Xia, Bin Fang, and Hong Zhang

The Flightless I Homolog, fli-1, Regulates Anterior/Posterior Polarity, Asymmetric Cell Division and Ovulation During Caenorhabditis elegans Development
Genetics 2007; 177(2): 847-860 [Abstract] [Full Text]  

Article supplement(s): [Data Supplement]

Meng Chen and Christina Kendziorski

A Statistical Framework for Expression Quantitative Trait Loci Mapping
Genetics 2007; 177(2): 761-771 [Abstract] [Full Text]  

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Irina Makarevitch, Robert M. Stupar, A. Leonardo Iniguez, William J. Haun, W. Brad Barbazuk, Shawn M. Kaeppler, and Nathan M. Springer

Natural Variation for Alleles Under Epigenetic Control by the Maize Chromomethylase Zmet2
Genetics 2007; 177(2): 749-760 [Abstract] [Full Text]  

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Alison E. Gammie, Naz Erdeniz, Julia Beaver, Barbara Devlin, Afshan Nanji, and Mark D. Rose

Functional Characterization of Pathogenic Human MSH2 Missense Mutations in Saccharomyces cerevisiae
Genetics 2007; 177(2): 707-721 [Abstract] [Full Text]  

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Eduardo Corredor, Adam J. Lukaszewski, Paula Pachón, Diana C. Allen, and Tomás Naranjo

Terminal Regions of Wheat Chromosomes Select Their Pairing Partners in Meiosis
Genetics 2007; 177(2): 699-706 [Abstract] [Full Text]  

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Gerald B. Call, John M. Olson, Jiong Chen, Nikki Villarasa, Kathy T. Ngo, Allison M. Yabroff, Shawn Cokus, Matteo Pellegrini, Elena Bibikova, Chris Bui, Albert Cespedes, Cheryl Chan, Stacy Chan, Amrita K. Cheema, Akanksha Chhabra, Vida Chitsazzadeh, Minh-Tu Do, Q. Angela Fang, Andrew Folick, Gelsey L. Goodstein, Cheng R. Huang, Tony Hung, Eunha Kim, William Kim, Yulee Kim, Emil Kohan, Edward Kuoy, Robert Kwak, Eric Lee, JiEun Lee, Henry Lin, H-C. Angela Liu, Tatiana Moroz, Tharani Prasad, Sacha L. Prashad, Alexander N. Patananan, Alma Rangel, Desiree Rosselli, Sohrab Sidhu, Daniel Sitz, Chelsea E. Taber, Jingwen Tan, Kasey Topp, PhuongThao Tran, Quynh-Minh Tran, Mary Unkovic, Maggie Wells, Jessica Wickland, Kevin Yackle, Amir Yavari, Jesse M. Zaretsky, Christopher M. Allen, Latifat Alli, Ju An, Abbas Anwar, Sonia Arevalo, Danny Ayoub, Shawn S. Badal, Armonde Baghdanian, Arthur H. Baghdanian, Sara A. Baumann, Vivian N. Becerra, Hei J. Chan, Aileen E. Chang, Xibin A. Cheng, Mabel Chin, Fleurette Chong, Carlyn Crisostomo, Sanjit Datta, Angela Delosreyes, Francie Diep, Preethika Ekanayake, Mark Engeln, Elizabeth Evers, Farzin Farshidi, Katrina Fischer, Arlene J. Formanes, Jun Gong, Riju Gupta, Blake E. Haas, Vicky Hahm, Michael Hsieh, James Z. Hui, Mei L. Iao, Sophia D. Jin, Angela Y. Kim, Lydia S-H. Kim, Megan King, Chloe Knudsen-Robbins, David Kohanchi, Bogdana Kovshilovskaya, Amy Ku, Raymond W. Kung, Mark E. L. Landig, Stephanie S. Latterman, Stephanie S. Lauw, Daniel S. Lee, Joann S. Lee, Kai C. Lei, Lesley L. Leung, Renata Lerner, Jian-ya Lin, Kathleen Lin, Bryon C. Lim, Crystal P. Y. Lui, Tiffany Q. Liu, Vincent Luong, Jacob Makshanoff, An-Chi Mei, Miguel Meza, Yara A. Mikhaeil, Majid Moarefi, Long H. Nguyen, Shekhar S. Pai, Manish Pandya, Aadit R. Patel, Paul D. Picard, Michael M. Safaee, Carol Salame, Christian Sanchez, Nina Sanchez, Christina C. Seifert, Abhishek Shah, Oganes H. Shilgevorkyan, Inderroop Singh, Vanessa Soma, Junia J. Song, Neetika Srivastava, Jennifer L. Sta.Ana, Christie Sun, Diane Tan, Alison S. Teruya, Robyn Tikia, Trinh Tran, Emily G. Travis, Jennifer D. Trinh, Diane Vo, Thomas Walsh, Regan S. Wong, Katherine Wu, Ya-Whey Wu, Nkau X. V. Yang, Michael Yeranosian, James S. Yu, Jennifer J. Zhou, Ran X. Zhu, Anna Abrams, Amanda Abramson, Latiffe Amado, Jenny Anderson, Keenan Bashour, Elsa Beyer, Allen Bookatz, Sarah Brewer, Natalie Buu, Stephanie Calvillo, Joseph Cao, Amy Chan, Jenny Chan, Aileen Chang, Daniel Chang, Yuli Chang, YiBing Chen, Joo Choi, Jeyling Chou, Peter Dang, Sumit Datta, Ardy Davarifar, Artemis Deravanesian, Poonam Desai, Jordan Fabrikant, Shahbaz Farnad, Katherine Fu, Eddie Garcia, Nick Garrone, Srpouhi Gasparyan, Phyllis Gayda, Sherrylene Go, Chad Goffstein, Courtney Gonzalez, Mariam Guirguis, Ryan Hassid, Brenda Hermogeno, Julie Hong, Aria Hong, Lindsay Hovestreydt, Charles Hu, Devon Huff, Farid Jamshidian, James Jen, Katrin Kahen, Linda Kao, Melissa Kelley, Thomas Kho, Yein Kim, Sarah Kim, Brian Kirkpatrick, Adam Langenbacher, Santino Laxamana, Janet Lee, Chris Lee, So-Youn Lee, ToHang S. Lee, Toni Lee, Gemma Lewis, Sheila Lezcano, Peter Lin, Thanh Luu, Julie Luu, Will Marrs, Erin Marsh, Jamie Marshall, Sarah Min, Tanya Minasian, Helena Minye, Amit Misra, Miles Morimoto, Yasaman Moshfegh, Jessica Murray, Kha Nguyen, Cynthia Nguyen, Ernesto Nodado II, Amanda O'Donahue, Ndidi Onugha, Nneka Orjiakor, Bhavin Padhiar, Eric Paul, Mara Pavel-Dinu, Alex Pavlenko, Edwin Paz, Sarah Phaklides, Lephong Pham, Preethi Poulose, Russell Powell, Aya Pusic, Divi Ramola, Kirsten Regalia, Meghann Ribbens, Bassel Rifai, Manyak Saakyan, Pamela Saarikoski, Miriam Segura, Farnaz Shadpour, Aram Shemmassian, Ramnik Singh, Vivek Singh, Emily Skinner, Daniel Solomin, Kosha Soneji, Kristin Spivey, Erika Stageberg, Marina Stavchanskiy, Leena Tekchandani, Leo Thai, Jayantha Thiyanaratnam, Maurine Tong, Aneet Toor, Steve Tovar, Kelly Trangsrud, Wah-Yung Tsang, Marc Uemura, Emily Vollmer, Emily Weiss, Damien Wood, Joy Wu, Sophia Wu, Winston Wu, Qing Xu, Yuki Yamauchi, Will Yarosh, Laura Yee, George Yen, and Utpal Banerjee

Genomewide Clonal Analysis of Lethal Mutations in the Drosophila melanogaster Eye: Comparison of the X Chromosome and Autosomes
Genetics 2007; 177(2): 689-697 [Abstract] [Full Text]  

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Heidi Major Sleister

Isolation and Characterization of Saccharomyces cerevisiae Mutants Defective in Chromosome Transmission in an Undergraduate Genetics Research Course
Genetics 2007; 177(2): 677-688 [Abstract] [Full Text]  

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Zaixiang Tang, Xuefeng Wang, Zhiqiu Hu, Zefeng Yang, and Chenwu Xu

Genetic Dissection of Cytonuclear Epistasis in Line Crosses
Genetics 2007; 177(1): 669-672 [Abstract] [Full Text]  

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Samin A. Sajan, Mark E. Warchol, and Michael Lovett

Toward a Systems Biology of Mouse Inner Ear Organogenesis: Gene Expression Pathways, Patterns and Network Analysis
Genetics 2007; 177(1): 631-653 [Abstract] [Full Text]  

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Jeramiah J. Smith and S. Randal Voss

Bird and Mammal Sex-Chromosome Orthologs Map to the Same Autosomal Region in a Salamander (Ambystoma)
Genetics 2007; 177(1): 607-613 [Abstract] [Full Text]  

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Julie King, Ian P. Armstead, S. Iain Donnison, Luned A. Roberts, John A. Harper, Kirsten Skøt, Kieran Elborough, and Ian P. King

Comparative Analyses Between Lolium/Festuca Introgression Lines and Rice Reveal the Major Fraction of Functionally Annotated Gene Models Is Located in Recombination-Poor/Very Recombination-Poor Regions of the Genome
Genetics 2007; 177(1): 597-606 [Abstract] [Full Text]  

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Yurii S. Aulchenko, Dirk-Jan de Koning, and Chris Haley

Genomewide Rapid Association Using Mixed Model and Regression: A Fast and Simple Method For Genomewide Pedigree-Based Quantitative Trait Loci Association Analysis
Genetics 2007; 177(1): 577-585 [Abstract] [Full Text]  

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Yinglong Cao, Xinhua Ding, Meng Cai, Jing Zhao, Yongjun Lin, Xianghua Li, Caiguo Xu, and Shiping Wang

The Expression Pattern of a Rice Disease Resistance Gene Xa3/Xa26 Is Differentially Regulated by the Genetic Backgrounds and Developmental Stages That Influence Its Function
Genetics 2007; 177(1): 523-533 [Abstract] [Full Text]  

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Jay F. Storz, Monica Baze, Jessica L. Waite, Federico G. Hoffmann, Juan C. Opazo, and Jack P. Hayes

Complex Signatures of Selection and Gene Conversion in the Duplicated Globin Genes of House Mice
Genetics 2007; 177(1): 481-500 [Abstract] [Full Text]  

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Stephan Hutter, Haipeng Li, Steffen Beisswanger, David De Lorenzo, and Wolfgang Stephan

Distinctly Different Sex Ratios in African and European Populations of Drosophila melanogaster Inferred From Chromosomewide Single Nucleotide Polymorphism Data
Genetics 2007; 177(1): 469-480 [Abstract] [Full Text]  

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Judith M. Kolkman, Simon T. Berry, Alberto J. Leon, Mary B. Slabaugh, Shunxue Tang, Wenxiang Gao, David K. Shintani, John M. Burke, and Steven J. Knapp

Single Nucleotide Polymorphisms and Linkage Disequilibrium in Sunflower
Genetics 2007; 177(1): 457-468 [Abstract] [Full Text]  

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Joshua T. Witten, Christina T. L. Chen, and Barak A. Cohen

Complex Genetic Changes in Strains of Saccharomyces cerevisiae Derived by Selection in the Laboratory
Genetics 2007; 177(1): 449-456 [Abstract] [Full Text]  

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Elizabeth G. Pringle, Simon W. Baxter, Claire L. Webster, Alexie Papanicolaou, Siu F. Lee, and Chris D. Jiggins

Synteny and Chromosome Evolution in the Lepidoptera: Evidence From Mapping in Heliconius melpomene
Genetics 2007; 177(1): 417-426 [Abstract] [Full Text]  

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John M. Eppley, Gene W. Tyson, Wayne M. Getz, and Jillian F. Banfield

Genetic Exchange Across a Species Boundary in the Archaeal Genus Ferroplasma
Genetics 2007; 177(1): 407-416 [Abstract] [Full Text]  

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Loukia N. Lili, Nicholas F. Britton, and Edward J. Feil

The Persistence of Parasitic Plasmids
Genetics 2007; 177(1): 399-405 [Abstract] [Full Text]  

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Jitka Zluvova, Sevdalin Georgiev, Bohuslav Janousek, Deborah Charlesworth, Boris Vyskot, and Ioan Negrutiu

Early Events in the Evolution of the Silene latifolia Y Chromosome: Male Specialization and Recombination Arrest
Genetics 2007; 177(1): 375-386 [Abstract] [Full Text]  

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Eva Dolezelova, David Dolezel, and Jeffrey C. Hall

Rhythm Defects Caused by Newly Engineered Null Mutations in Drosophila's cryptochrome Gene
Genetics 2007; 177(1): 329-345 [Abstract] [Full Text]  

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Amy S. Rawls, Sarah A. Schultz, Robi D. Mitra, and Tanya Wolff

Bedraggled, a Putative Transporter, Influences the Tissue Polarity Complex During the R3/R4 Fate Decision in the Drosophila Eye
Genetics 2007; 177(1): 313-328 [Abstract] [Full Text]  

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Janet K. Jang, Taslima Rahman, Vanessa S. Kober, Jeffry Cesario, and Kim S. McKim

Misregulation of the Kinesin-like Protein Subito Induces Meiotic Spindle Formation in the Absence of Chromosomes and Centrosomes
Genetics 2007; 177(1): 267-280 [Abstract] [Full Text]  

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Tomoko Yamada-Inagawa, Amar J. S. Klar, and Jacob Z. Dalgaard

Schizosaccharomyces pombe Switches Mating Type by the Synthesis-Dependent Strand-Annealing Mechanism
Genetics 2007; 177(1): 255-265 [Abstract] [Full Text]  

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Summer F. Acevedo, K. Kirki Tsigkari, Sofia Grammenoudi, and Efthimios M. C. Skoulakis

In Vivo Functional Specificity and Homeostasis of Drosophila 14-3-3 Proteins
Genetics 2007; 177(1): 239-253 [Abstract] [Full Text]  

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Gina Devasahayam, Daniel J. Burke, and Thomas W. Sturgill

Golgi Manganese Transport Is Required for Rapamycin Signaling in Saccharomyces cerevisiae
Genetics 2007; 177(1): 231-238 [Abstract] [Full Text]  

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Jun Ma, Rui Jin, Xiaoyu Jia, Craig J. Dobry, Li Wang, Fulvio Reggiori, Ji Zhu, and Anuj Kumar

An Interrelationship Between Autophagy and Filamentous Growth in Budding Yeast
Genetics 2007; 177(1): 205-214 [Abstract] [Full Text]  

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Gregory P. Mullen, Eleanor A. Mathews, Mai H. Vu, Jerrod W. Hunter, Dennis L. Frisby, Angie Duke, Kiely Grundahl, Jamie D. Osborne, John A. Crowell, and James B. Rand

Choline Transport and de novo Choline Synthesis Support Acetylcholine Biosynthesis in Caenorhabditis elegans Cholinergic Neurons
Genetics 2007; 177(1): 195-204 [Abstract] [Full Text]  

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Teresa D. Gallardo, George B. John, Lane Shirley, Cristina M. Contreras, Esra A. Akbay, J. Marshall Haynie, Samuel E. Ward, Meredith J. Shidler, and Diego H. Castrillon

Genomewide Discovery and Classification of Candidate Ovarian Fertility Genes in the Mouse
Genetics 2007; 177(1): 179-194 [Abstract] [Full Text]  

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A. Irina Mutiu, Stephen M. T. Hoke, Julie Genereaux, Carol Hannam, Katherine MacKenzie, Olivier Jobin-Robitaille, Julie Guzzo, Jacques Côté, Brenda Andrews, David B. Haniford, and Christopher J. Brandl

Structure/Function Analysis of the Phosphatidylinositol-3-Kinase Domain of Yeast Tra1
Genetics 2007; 177(1): 151-166 [Abstract] [Full Text]  

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Suzanne C. Hoppins, Nancy E. Go, Astrid Klein, Simone Schmitt, Walter Neupert, Doron Rapaport, and Frank E. Nargang

Alternative Splicing Gives Rise to Different Isoforms of the Neurospora crassa Tob55 Protein That Vary in Their Ability to Insert ß-Barrel Proteins Into the Outer Mitochondrial Membrane
Genetics 2007; 177(1): 137-149 [Abstract] [Full Text]  

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Nicole James, Emilie Landrieux, and Martine A. Collart

A SAGA-Independent Function of SPT3 Mediates Transcriptional Deregulation in a Mutant of the Ccr4-Not Complex in Saccharomyces cerevisiae
Genetics 2007; 177(1): 123-135 [Abstract] [Full Text]  

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Andrea A. Duina, Anne Rufiange, John Bracey, Jeffrey Hall, Amine Nourani, and Fred Winston

Evidence that the Localization of the Elongation Factor Spt16 Across Transcribed Genes Is Dependent Upon Histone H3 Integrity in Saccharomyces cerevisiae
Genetics 2007; 177(1): 101-112 [Abstract] [Full Text]  

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Fanis Missirlis, Stylianos Kosmidis, Tom Brody, Manos Mavrakis, Sara Holmberg, Ward F. Odenwald, Efthimios M. C. Skoulakis, and Tracey A. Rouault

Homeostatic Mechanisms for Iron Storage Revealed by Genetic Manipulations and Live Imaging of Drosophila Ferritin
Genetics 2007; 177(1): 89-100 [Abstract] [Full Text]  

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Claire L. Dovey and Paul Russell

Mms22 Preserves Genomic Integrity During DNA Replication in Schizosaccharomyces pombe
Genetics 2007; 177(1): 47-61 [Abstract] [Full Text]  

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Xiaole L. Chen, Hannah R. Silver, Ling Xiong, Irina Belichenko, Caroline Adegite, and Erica S. Johnson

Topoisomerase I-Dependent Viability Loss in Saccharomyces cerevisiae Mutants Defective in Both SUMO Conjugation and DNA Repair
Genetics 2007; 177(1): 17-30 [Abstract] [Full Text]  

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Michela Troggio, Giulia Malacarne, Giuseppina Coppola, Cinzia Segala, Dustin A. Cartwright, Massimo Pindo, Marco Stefanini, Rolf Mank, Marco Moroldo, Michele Morgante, M. Stella Grando, and Riccardo Velasco

A Dense Single-Nucleotide Polymorphism-Based Genetic Linkage Map of Grapevine (Vitis vinifera L.) Anchoring Pinot Noir Bacterial Artificial Chromosome Contigs
Genetics 2007; 176(4): 2637-2650 [Abstract] [Full Text]  

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Junkang Rong, F. Alex Feltus, Vijay N. Waghmare, Gary J. Pierce, Peng W. Chee, Xavier Draye, Yehoshua Saranga, Robert J. Wright, Thea A. Wilkins, O. Lloyd May, C. Wayne Smith, John R. Gannaway, Jonathan F. Wendel, and Andrew H. Paterson

Meta-analysis of Polyploid Cotton QTL Shows Unequal Contributions of Subgenomes to a Complex Network of Genes and Gene Clusters Implicated in Lint Fiber Development
Genetics 2007; 176(4): 2577-2588 [Abstract] [Full Text]  

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Rita M. Graze, Olga Barmina, Daniel Tufts, Elena Naderi, Kristy L. Harmon, Maria Persianinova, and Sergey V. Nuzhdin

New Candidate Genes for Sex-Comb Divergence Between Drosophila mauritiana and Drosophila simulans
Genetics 2007; 176(4): 2561-2576 [Abstract] [Full Text]  

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Roman Matyásek, Jennifer A. Tate, Yoong K. Lim, Hana Srubarová, Jin Koh, Andrew R. Leitch, Douglas E. Soltis, Pamela S. Soltis, and Ales Kovarík

Concerted Evolution of rDNA in Recently Formed Tragopogon Allotetraploids Is Typically Associated With an Inverse Correlation Between Gene Copy Number and Expression
Genetics 2007; 176(4): 2509-2519 [Abstract] [Full Text]  

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Ramanand A. Subramanian, Peter Arensburger, Peter W. Atkinson, and David A. O'Brochta

Transposable Element Dynamics of the hAT Element Herves in the Human Malaria Vector Anopheles gambiae s.s.
Genetics 2007; 176(4): 2477-2487 [Abstract] [Full Text]  

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Andreas Wagner

Rapid Detection of Positive Selection in Genes and Genomes Through Variation Clusters
Genetics 2007; 176(4): 2451-2463 [Abstract] [Full Text]  

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Yoshihiko Tsumura, Tomoyuki Kado, Tomokazu Takahashi, Naoki Tani, Tokuko Ujino-Ihara, and Hiroyoshi Iwata

Genome Scan to Detect Genetic Structure and Adaptive Genes of Natural Populations of Cryptomeria japonica
Genetics 2007; 176(4): 2393-2403 [Abstract] [Full Text]  

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Esther Kamau, Brian Charlesworth, and Deborah Charlesworth

Linkage Disequilibrium and Recombination Rate Estimates in the Self-Incompatibility Region of Arabidopsis lyrata
Genetics 2007; 176(4): 2357-2369 [Abstract] [Full Text]  

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Thibaut Malausa, Laurianne Leniaud, Jean-François Martin, Philippe Audiot, Denis Bourguet, Sergine Ponsard, Siu-Fai Lee, Richard G. Harrison, and Erik Dopman

Molecular Differentiation at Nuclear Loci in French Host Races of the European Corn Borer (Ostrinia nubilalis)
Genetics 2007; 176(4): 2343-2355 [Abstract] [Full Text]  

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Undral Orgil, Hitoshi Araki, Samantha Tangchaiburana, Robert Berkey, and Shunyuan Xiao

Intraspecific Genetic Variations, Fitness Cost and Benefit of RPW8, A Disease Resistance Locus in Arabidopsis thaliana
Genetics 2007; 176(4): 2317-2333 [Abstract] [Full Text]  

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Xulio Maside and Brian Charlesworth

Patterns of Molecular Variation and Evolution in Drosophila americana and Its Relatives
Genetics 2007; 176(4): 2293-2305 [Abstract] [Full Text]  

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Magdalena M. Baer, Andreas Bilstein, and Maria Leptin

A Clonal Genetic Screen for Mutants Causing Defects in Larval Tracheal Morphogenesis in Drosophila
Genetics 2007; 176(4): 2279-2291 [Abstract] [Full Text]  

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Elizabeth N. Mindorff, David D. O'Keefe, Alain Labbé, Jennie Ping Yang, Yimiao Ou, Shingo Yoshikawa, and Donald J. van Meyel

A Gain-of-Function Screen for Genes That Influence Axon Guidance Identifies the NF-B Protein Dorsal and Reveals a Requirement for the Kinase Pelle in Drosophila Photoreceptor Axon Targeting
Genetics 2007; 176(4): 2247-2263 [Abstract] [Full Text]  

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Nan Ren, Jeannette Charlton, and Paul N. Adler

The flare Gene, Which Encodes the AIP1 Protein of Drosophila, Functions to Regulate F-Actin Disassembly in Pupal Epidermal Cells
Genetics 2007; 176(4): 2223-2234 [Abstract] [Full Text]  

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Martha Betson and Jeffrey Settleman

A Rho-Binding Protein Kinase C-Like Activity Is Required for the Function of Protein Kinase N in Drosophila Development
Genetics 2007; 176(4): 2201-2212 [Abstract] [Full Text]  

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Song-Bin Chang, Lorinda K. Anderson, Jamie D. Sherman, Suzanne M. Royer, and Stephen M. Stack

Predicting and Testing Physical Locations of Genetically Mapped Loci on Tomato Pachytene Chromosome 1
Genetics 2007; 176(4): 2131-2138 [Abstract] [Full Text]  

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Sumeet Sarin, M. Maggie O'Meara, Eileen B. Flowers, Celia Antonio, Richard J. Poole, Dominic Didiano, Robert J. Johnston Jr., Sarah Chang, Surinder Narula, and Oliver Hobert

Genetic Screens for Caenorhabditis elegans Mutants Defective in Left/Right Asymmetric Neuronal Fate Specification
Genetics 2007; 176(4): 2109-2130 [Abstract] [Full Text]  

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Carrie A. Smith, Charles P. Woloshuk, Dominique Robertson, and Gary A. Payne

Silencing of the Aflatoxin Gene Cluster in a Diploid Strain of Aspergillus flavus Is Suppressed by Ectopic aflR Expression
Genetics 2007; 176(4): 2077-2086 [Abstract] [Full Text]  

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Adrien Chabot, Ralla A. Shrit, Ran Blekhman, and Yoav Gilad

Using Reporter Gene Assays to Identify cis Regulatory Differences Between Humans and Chimpanzees
Genetics 2007; 176(4): 2069-2076 [Abstract] [Full Text]  

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Robert M. Stupar, Pudota B. Bhaskar, Brian S. Yandell, Willem A. Rensink, Amy L. Hart, Shu Ouyang, Richard E. Veilleux, James S. Busse, Robert J. Erhardt, C. Robin Buell, and Jiming Jiang

Phenotypic and Transcriptomic Changes Associated With Potato Autopolyploidization
Genetics 2007; 176(4): 2055-2067 [Abstract] [Full Text]  

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Stephen J. Dinka, Matthew A. Campbell, Tyler Demers, and Manish N. Raizada

Predicting the Size of the Progeny Mapping Population Required to Positionally Clone a Gene
Genetics 2007; 176(4): 2035-2054 [Abstract] [Full Text]  

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Sarit Smolikov, Andreas Eizinger, Allison Hurlburt, Eric Rogers, Anne M. Villeneuve, and Mónica P. Colaiácovo

Synapsis-Defective Mutants Reveal a Correlation Between Chromosome Conformation and the Mode of Double-Strand Break Repair During Caenorhabditis elegans Meiosis
Genetics 2007; 176(4): 2027-2033 [Abstract] [Full Text]  

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Kihoon Lee and Sang Eun Lee

Saccharomyces cerevisiae Sae2- and Tel1-Dependent Single-Strand DNA Formation at DNA Break Promotes Microhomology-Mediated End Joining
Genetics 2007; 176(4): 2003-2014 [Abstract] [Full Text]  

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Mitch McVey, Sabrina L. Andersen, Yuri Broze, and Jeff Sekelsky

Multiple Functions of Drosophila BLM Helicase in Maintenance of Genome Stability
Genetics 2007; 176(4): 1979-1992 [Abstract] [Full Text]  

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Vitor Barbosa, Naomi Kimm, and Ruth Lehmann

A Maternal Screen for Genes Regulating Drosophila Oocyte Polarity Uncovers New Steps in Meiotic Progression
Genetics 2007; 176(4): 1967-1977 [Abstract] [Full Text]  

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Floyd A. Reed

Two-Locus Epistasis With Sexually Antagonistic Selection: A Genetic Parrondo's Paradox
Genetics 2007; 176(3): 1923-1929 [Abstract] [Full Text]  

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W. Barendse, A. Reverter, R. J. Bunch, B. E. Harrison, W. Barris, and M. B. Thomas

A Validated Whole-Genome Association Study of Efficient Food Conversion in Cattle
Genetics 2007; 176(3): 1893-1905 [Abstract] [Full Text]  

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F. Levillayer, M. Mas, F. Levi-Acobas, M. Brahic, and J. F. Bureau

Interleukin 22 Is a Candidate Gene for Tmevp3, a Locus Controlling Theiler's Virus-Induced Neurological Diseases
Genetics 2007; 176(3): 1835-1844 [Abstract] [Full Text]  

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David A. Moeller, Maud I. Tenaillon, and Peter Tiffin

Population Structure and Its Effects on Patterns of Nucleotide Polymorphism in Teosinte (Zea mays ssp. parviglumis)
Genetics 2007; 176(3): 1799-1809 [Abstract] [Full Text]  

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Mikael Brandström and Hans Ellegren

The Genomic Landscape of Short Insertion and Deletion Polymorphisms in the Chicken (Gallus gallus) Genome: A High Frequency of Deletions in Tandem Duplicates
Genetics 2007; 176(3): 1691-1701 [Abstract] [Full Text]  

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Dejerianne Ostrow, Naomi Phillips, Arián Avalos, Dustin Blanton, Ashley Boggs, Thomas Keller, Laura Levy, Jeffrey Rosenbloom, and Charles F. Baer

Mutational Bias for Body Size in Rhabditid Nematodes
Genetics 2007; 176(3): 1653-1661 [Abstract] [Full Text]  

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Hong Gao, Scott Williamson, and Carlos D. Bustamante

A Markov Chain Monte Carlo Approach for Joint Inference of Population Structure and Inbreeding Rates From Multilocus Genotype Data
Genetics 2007; 176(3): 1635-1651 [Abstract] [Full Text]  

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Frank Shewmaker, Lori Mull, Toru Nakayashiki, Daniel C. Masison, and Reed B. Wickner

Ure2p Function Is Enhanced by Its Prion Domain in Saccharomyces cerevisiae
Genetics 2007; 176(3): 1557-1565 [Abstract] [Full Text]  

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Frederick R. Cross, Lea Schroeder, and James M. Bean

Phosphorylation of the Sic1 Inhibitor of B-Type Cyclins in Saccharomyces cerevisiae Is Not Essential but Contributes to Cell Cycle Robustness
Genetics 2007; 176(3): 1541-1555 [Abstract] [Full Text]  

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Zhaojun Ding, Mark R. Doyle, Richard M. Amasino, and Seth J. Davis

A Complex Genetic Interaction Between Arabidopsis thaliana TOC1 and CCA1/LHY in Driving the Circadian Clock and in Output Regulation
Genetics 2007; 176(3): 1501-1510 [Abstract] [Full Text]  

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Jin Li, Lisa C. Harper, Inna Golubovskaya, C. Rachel Wang, David Weber, Robert B. Meeley, John McElver, Ben Bowen, W. Zacheus Cande, and Patrick S. Schnable

Functional Analysis of Maize RAD51 in Meiosis and Double-Strand Break Repair
Genetics 2007; 176(3): 1469-1482 [Abstract] [Full Text]  

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M. Falque, R. Mercier, C. Mézard, D. de Vienne, and O. C. Martin

Patterns of Recombination and MLH1 Foci Density Along Mouse Chromosomes: Modeling Effects of Interference and Obligate Chiasma
Genetics 2007; 176(3): 1453-1467 [Abstract] [Full Text]  

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Hong Xu, Charles Boone, and Grant W. Brown

Genetic Dissection of Parallel Sister-Chromatid Cohesion Pathways
Genetics 2007; 176(3): 1417-1429 [Abstract] [Full Text]  

Article supplement(s): [Data Supplement]

Anabelle Decottignies

Microhomology-Mediated End Joining in Fission Yeast Is Repressed by Pku70 and Relies on Genes Involved in Homologous Recombination
Genetics 2007; 176(3): 1403-1415 [Abstract] [Full Text]  

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Sally G. Hoskins, Leslie M. Stevens, and Ross H. Nehm

Selective Use of the Primary Literature Transforms the Classroom Into a Virtual Laboratory
Genetics 2007; 176(3): 1381-1389 [Abstract] [Full Text]  

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Hugh M. Robertson, Julia A. Navik, Kimberly K. O. Walden, and Hans-Willi Honegger

The Bursicon Gene in Mosquitoes: An Unusual Example of mRNA Trans-splicing
Genetics 2007; 176(2): 1351-1353 [Abstract] [Full Text]  

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Lev Usakin, José Abad, Vasily V. Vagin, Beatriz de Pablos, Alfredo Villasante, and Vladimir A. Gvozdev

Transcription of the 1.688 Satellite DNA Family Is Under the Control of RNA Interference Machinery in Drosophila melanogaster Ovaries
Genetics 2007; 176(2): 1343-1349 [Abstract] [Full Text]  

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Jittima Piriyapongsa, Leonardo Mariño-Ramírez, and I. King Jordan

Origin and Evolution of Human microRNAs From Transposable Elements
Genetics 2007; 176(2): 1323-1337 [Abstract] [Full Text]  

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Jun Zhang, Karen L. Schulze, P. Robin Hiesinger, Kaye Suyama, Stream Wang, Matthew Fish, Melih Acar, Roger A. Hoskins, Hugo J. Bellen, and Matthew P. Scott

Thirty-One Flavors of Drosophila Rab Proteins
Genetics 2007; 176(2): 1307-1322 [Abstract] [Full Text]  

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Naoki Osato, Yoshiyuki Suzuki, Kazuho Ikeo, and Takashi Gojobori

Transcriptional Interferences in cis Natural Antisense Transcripts of Humans and Mice
Genetics 2007; 176(2): 1299-1306 [Abstract] [Full Text]  

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Anne Simonsen, Robert C. Cumming, Karine Lindmo, Vanessa Galaviz, Susan Cheng, Tor Erik Rusten, and Kim D. Finley

Genetic Modifiers of the Drosophila Blue Cheese Gene Link Defects in Lysosomal Transport With Decreased Life Span and Altered Ubiquitinated-Protein Profiles
Genetics 2007; 176(2): 1283-1297 [Abstract] [Full Text]  

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Anthony C. Fiumera, Bethany L. Dumont, and Andrew G. Clark

Associations Between Sperm Competition and Natural Variation in Male Reproductive Genes on the Third Chromosome of Drosophila melanogaster
Genetics 2007; 176(2): 1245-1260 [Abstract] [Full Text]  

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Lawrence N. Kwong, Alexandra Shedlovsky, Bryan S. Biehl, Linda Clipson, Cheri A. Pasch, and William F. Dove

Identification of Mom7, a Novel Modifier of Apc^Min/+ on Mouse Chromosome 18
Genetics 2007; 176(2): 1237-1244 [Abstract] [Full Text]  

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Ian M. Ehrenreich, Phillip A. Stafford, and Michael D. Purugganan

The Genetic Architecture of Shoot Branching in Arabidopsis thaliana: A Comparative Assessment of Candidate Gene Associations vs. Quantitative Trait Locus Mapping
Genetics 2007; 176(2): 1223-1236 [Abstract] [Full Text]  

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Sha Tang and Bradley C. Hyman

Mitochondrial Genome Haplotype Hypervariation Within the Isopod Parasitic Nematode Thaumamermis cosgrovei
Genetics 2007; 176(2): 1139-1150 [Abstract] [Full Text]  

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David J. Begun, Heather A. Lindfors, Andrew D. Kern, and Corbin D. Jones

Evidence for de Novo Evolution of Testis-Expressed Genes in the Drosophila yakuba/Drosophila erecta Clade
Genetics 2007; 176(2): 1131-1137 [Abstract] [Full Text]  

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Ben J. Evans

Ancestry Influences the Fate of Duplicated Genes Millions of Years After Polyploidization of Clawed Frogs (Xenopus)
Genetics 2007; 176(2): 1119-1130 [Abstract] [Full Text]  

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Jeremy Van Cleve and Marcus W. Feldman

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Genetics 2007; 176(2): 1101-1118 [Abstract] [Full Text]  

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Sinéad Collins, Juliette de Meaux, and Claudia Acquisti

Adaptive Walks Toward a Moving Optimum
Genetics 2007; 176(2): 1089-1099 [Abstract] [Full Text]  

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Maciej F. Boni, David Posada, and Marcus W. Feldman

An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets
Genetics 2007; 176(2): 1035-1047 [Abstract] [Full Text]  

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Antoine Barrière and Marie-Anne Félix

Temporal Dynamics and Linkage Disequilibrium in Natural Caenorhabditis elegans Populations
Genetics 2007; 176(2): 999-1011 [Abstract] [Full Text]  

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José M. Ponciano, Leen De Gelder, Eva M. Top, and Paul Joyce

The Population Biology of Bacterial Plasmids: A Hidden Markov Model Approach
Genetics 2007; 176(2): 957-968 [Abstract] [Full Text]  

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Alexandre Berr and Ingo Schubert

Interphase Chromosome Arrangement in Arabidopsis thaliana Is Similar in Differentiated and Meristematic Tissues and Shows a Transient Mirror Symmetry After Nuclear Division
Genetics 2007; 176(2): 853-863 [Abstract] [Full Text]  

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Rebecca L. Hurto, Amy Hin Yan Tong, Charles Boone, and Anita K. Hopper

Inorganic Phosphate Deprivation Causes tRNA Nuclear Accumulation via Retrograde Transport in Saccharomyces cerevisiae
Genetics 2007; 176(2): 841-852 [Abstract] [Full Text]  

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Kyoji Horie, Ei-suke Saito, Vincent W. Keng, Ryuji Ikeda, Hiroshi Ishihara, and Junji Takeda

Retrotransposons Influence the Mouse Transcriptome: Implication for the Divergence of Genetic Traits
Genetics 2007; 176(2): 815-827 [Abstract] [Full Text]  

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Z. W. Luo, E. Potokina, A. Druka, R. Wise, R. Waugh, and M. J. Kearsey

SFP Genotyping From Affymetrix Arrays Is Robust But Largely Detects Cis-acting Expression Regulators
Genetics 2007; 176(2): 789-800 [Abstract] [Full Text]  

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Mehar S. Khatkar, Kyall R. Zenger, Matthew Hobbs, Rachel J. Hawken, Julie A. L. Cavanagh, Wes Barris, Alexander E. McClintock, Sara McClintock, Peter C. Thomson, Bruce Tier, Frank W. Nicholas, and Herman W. Raadsma

A Primary Assembly of a Bovine Haplotype Block Map Based on a 15,036-Single-Nucleotide Polymorphism Panel Genotyped in Holstein–Friesian Cattle
Genetics 2007; 176(2): 763-772 [Abstract] [Full Text]  

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Pavel Neumann, Huihuang Yan, and Jiming Jiang

The Centromeric Retrotransposons of Rice Are Transcribed and Differentially Processed by RNA Interference
Genetics 2007; 176(2): 749-761 [Abstract] [Full Text]  

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Ik-Young Choi, David L. Hyten, Lakshmi K. Matukumalli, Qijian Song, Julian M. Chaky, Charles V. Quigley, Kevin Chase, K. Gordon Lark, Robert S. Reiter, Mun-Sup Yoon, Eun-Young Hwang, Seung-In Yi, Nevin D. Young, Randy C. Shoemaker, Curtis P. van Tassell, James E. Specht, and Perry B. Cregan

A Soybean Transcript Map: Gene Distribution, Haplotype and Single-Nucleotide Polymorphism Analysis
Genetics 2007; 176(1): 685-696 [Abstract] [Full Text]  

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Elisabetta Frascaroli, Maria Angela Canè, Pierangelo Landi, Giorgio Pea, Luca Gianfranceschi, Marzio Villa, Michele Morgante, and Mario Enrico Pè

Classical Genetic and Quantitative Trait Loci Analyses of Heterosis in a Maize Hybrid Between Two Elite Inbred Lines
Genetics 2007; 176(1): 625-644 [Abstract] [Full Text]  

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Sébastien Faure, Janet Higgins, Adrian Turner, and David A. Laurie

The FLOWERING LOCUS T-Like Gene Family in Barley (Hordeum vulgare)
Genetics 2007; 176(1): 599-609 [Abstract] [Full Text]  

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Wangzhen Guo, Caiping Cai, Changbiao Wang, Zhiguo Han, Xianliang Song, Kai Wang, Xiaowei Niu, Cheng Wang, Keyu Lu, Ben Shi, and Tianzhen Zhang

A Microsatellite-Based, Gene-Rich Linkage Map Reveals Genome Structure, Function and Evolution in Gossypium
Genetics 2007; 176(1): 527-541 [Abstract] [Full Text]  

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Eleni Bantinaki, Rees Kassen, Christopher G. Knight, Zena Robinson, Andrew J. Spiers, and Paul B. Rainey

Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. III. Mutational Origins of Wrinkly Spreader Diversity
Genetics 2007; 176(1): 441-453 [Abstract] [Full Text]  

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HyeRan Kim, Phillip San Miguel, William Nelson, Kristi Collura, Marina Wissotski, Jason G. Walling, Jun Pyo Kim, Scott A. Jackson, Carol Soderlund, and Rod A. Wing

Comparative Physical Mapping Between Oryza sativa (AA Genome Type) and O. punctata (BB Genome Type)
Genetics 2007; 176(1): 379-390 [Abstract] [Full Text]  

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Audrey S. Chang and Mohamed A. F. Noor

The Genetics of Hybrid Male Sterility Between the Allopatric Species Pair Drosophila persimilis and D. pseudoobscura bogotana: Dominant Sterility Alleles in Collinear Autosomal Regions
Genetics 2007; 176(1): 343-349 [Abstract] [Full Text]  

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Amber Carmon, Marian Wilkin, Jana Hassan, Martin Baron, and Ross MacIntyre

Concerted Evolution Within the Drosophila dumpy Gene
Genetics 2007; 176(1): 309-325 [Abstract] [Full Text]  

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Patrick A. Reeves, Yuehui He, Robert J. Schmitz, Richard M. Amasino, Lee W. Panella, and Christopher M. Richards

Evolutionary Conservation of the FLOWERING LOCUS C-Mediated Vernalization Response: Evidence From the Sugar Beet (Beta vulgaris)
Genetics 2007; 176(1): 295-307 [Abstract] [Full Text]  

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Shri Ram Yadav, Kalika Prasad, and Usha Vijayraghavan

Divergent Regulatory OsMADS2 Functions Control Size, Shape and Differentiation of the Highly Derived Rice Floret Second-Whorl Organ
Genetics 2007; 176(1): 283-294 [Abstract] [Full Text]  

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Sanjida H. Rangwala and Eric J. Richards

Differential Epigenetic Regulation Within an Arabidopsis Retroposon Family
Genetics 2007; 176(1): 151-160 [Abstract] [Full Text]  

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Sarah J. Radford, Mathilde M. Sabourin, Susan McMahan, and Jeff Sekelsky

Meiotic Recombination in Drosophila Msh6 Mutants Yields Discontinuous Gene Conversion Tracts
Genetics 2007; 176(1): 53-62 [Abstract] [Full Text]  

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Rabaab Zahra, John K. Blackwood, Jill Sales, and David R. F. Leach

Proofreading and Secondary Structure Processing Determine the Orientation Dependence of CAG·CTG Trinucleotide Repeat Instability in Escherichia coli
Genetics 2007; 176(1): 27-41 [Abstract] [Full Text]  

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Kiyoshi Kikuchi, Wataru Kai, Ayumi Hosokawa, Naoki Mizuno, Hiroaki Suetake, Kiyoshi Asahina, and Yuzuru Suzuki

The Sex-Determining Locus in the Tiger Pufferfish, Takifugu rubripes
Genetics 2007; 175(4): 2039-2042 [Abstract] [Full Text]  

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Jessica B. Bessler, Kirthi C. Reddy, Michiko Hayashi, Jonathan Hodgkin, and Anne M. Villeneuve

A Role for Caenorhabditis elegans Chromatin-Associated Protein HIM-17 in the Proliferation vs. Meiotic Entry Decision
Genetics 2007; 175(4): 2029-2037 [Abstract] [Full Text]  

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Hajime Takeuchi, Oleg Georgiev, Michael Fetchko, Michael Kappeler, Walter Schaffner, and Dieter Egli

In Vivo Construction of Transgenes in Drosophila
Genetics 2007; 175(4): 2019-2028 [Abstract] [Full Text]  

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Jonathan D. Gruber, Anne Genissel, Stuart J. Macdonald, and Anthony D. Long

How Repeatable Are Associations Between Polymorphisms in achaete–scute and Bristle Number Variation in Drosophila?
Genetics 2007; 175(4): 1987-1997 [Abstract] [Full Text]  

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Roberta Bergero, Alan Forrest, Esther Kamau, and Deborah Charlesworth

Evolutionary Strata on the X Chromosomes of the Dioecious Plant Silene latifolia: Evidence From New Sex-Linked Genes
Genetics 2007; 175(4): 1945-1954 [Abstract] [Full Text]  

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David L. Hyten, Ik-Young Choi, Qijian Song, Randy C. Shoemaker, Randall L. Nelson, Jose M. Costa, James E. Specht, and Perry B. Cregan

Highly Variable Patterns of Linkage Disequilibrium in Multiple Soybean Populations
Genetics 2007; 175(4): 1937-1944 [Abstract] [Full Text]  

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John F. Baines and Bettina Harr

Reduced X-Linked Diversity in Derived Populations of House Mice
Genetics 2007; 175(4): 1911-1921 [Abstract] [Full Text]  

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Yoko Yatabe, Nolan C. Kane, Caroline Scotti-Saintagne, and Loren H. Rieseberg

Rampant Gene Exchange Across a Strong Reproductive Barrier Between the Annual Sunflowers, Helianthus annuus and H. petiolaris
Genetics 2007; 175(4): 1883-1893 [Abstract] [Full Text]  

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Hidenori Sassa, Hiroyuki Kakui, Mayu Miyamoto, Yusuke Suzuki, Toshio Hanada, Koichiro Ushijima, Makoto Kusaba, Hisashi Hirano, and Takato Koba

S Locus F-Box Brothers: Multiple and Pollen-Specific F-Box Genes With S Haplotype-Specific Polymorphisms in Apple and Japanese Pear
Genetics 2007; 175(4): 1869-1881 [Abstract] [Full Text]  

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V. King, P. N. Goodfellow, A. J. Pearks Wilkerson, W. E. Johnson, S. J. O'Brien, and J. Pecon-Slattery

Evolution of the Male-Determining Gene SRY Within the Cat Family Felidae
Genetics 2007; 175(4): 1855-1867 [Abstract] [Full Text]  

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Nolan C. Kane and Loren H. Rieseberg

Selective Sweeps Reveal Candidate Genes for Adaptation to Drought and Salt Tolerance in Common Sunflower, Helianthus annuus
Genetics 2007; 175(4): 1823-1834 [Abstract] [Full Text]  

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L. Rene Garcia, Brigitte LeBoeuf, and Pamela Koo

Diversity in Mating Behavior of Hermaphroditic and Male–Female Caenorhabditis Nematodes
Genetics 2007; 175(4): 1761-1771 [Abstract] [Full Text]  

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Peter W. Reddien, Erik C. Andersen, Michael C. Huang, and H. Robert Horvitz

DPL-1 DP, LIN-35 Rb and EFL-1 E2F Act With the MCD-1 Zinc-Finger Protein to Promote Programmed Cell Death in Caenorhabditis elegans
Genetics 2007; 175(4): 1719-1733 [Abstract] [Full Text]  

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Nicole C. Grieder, Ilias Charlafti, Urs Kloter, Herbert Jäckle, Ulrich Schäfer, and Walter J. Gehring

Misexpression Screen in Drosophila melanogaster Aiming to Reveal Novel Factors Involved in Formation of Body Parts
Genetics 2007; 175(4): 1707-1718 [Abstract] [Full Text]  

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Maja Tarailo, Risa Kitagawa, and Ann M. Rose

Suppressors of Spindle Checkpoint Defect (such) Mutants Identify New mdf-1/MAD1 Interactors in Caenorhabditis elegans
Genetics 2007; 175(4): 1665-1679 [Abstract] [Full Text]  

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Christine M. Wright, Sheara W. Fewell, Mara L. Sullivan, James M. Pipas, Simon C. Watkins, and Jeffrey L. Brodsky

The Hsp40 Molecular Chaperone Ydj1p, Along With the Protein Kinase C Pathway, Affects Cell-Wall Integrity in the Yeast Saccharomyces cerevisiae
Genetics 2007; 175(4): 1649-1664 [Abstract] [Full Text]  

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Maryvonne Mével-Ninio, Alain Pelisson, Jennifer Kinder, Ana Regina Campos, and Alain Bucheton

The flamenco Locus Controls the gypsy and ZAM Retroviruses and Is Required for Drosophila Oogenesis
Genetics 2007; 175(4): 1615-1624 [Abstract] [Full Text]  

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Jung Kyoon Choi and Sang Cheol Kim

Environmental Effects on Gene Expression Phenotype Have Regional Biases in the Human Genome
Genetics 2007; 175(4): 1607-1613 [Abstract] [Full Text]  

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Karen M. Lee, Suzanne Nizza, Thomas Hayes, Kirstin L. Bass, Anja Irmisch, Johanne M. Murray, and Matthew J. O'Connell

Brc1-Mediated Rescue of Smc5/6 Deficiency: Requirement for Multiple Nucleases and a Novel Rad18 Function
Genetics 2007; 175(4): 1585-1595 [Abstract] [Full Text]  

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Yoshie Tange and Osami Niwa

Novel mad2 Alleles Isolated in a Schizosaccharomyces pombe -Tubulin Mutant Are Defective in Metaphase Arrest Activity, but Remain Functional for Chromosome Stability in Unperturbed Mitosis
Genetics 2007; 175(4): 1571-1584 [Abstract] [Full Text]  

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Harma Feitsma, Marcelo C. Leal, Peter B. Moens, Edwin Cuppen, and Rüdiger W. Schulz

Mlh1 Deficiency in Zebrafish Results in Male Sterility and Aneuploid as Well as Triploid Progeny in Females
Genetics 2007; 175(4): 1561-1569 [Abstract] [Full Text]  

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Sara Isaac, Julian Walfridsson, Tal Zohar, David Lazar, Tamar Kahan, Karl Ekwall, and Amikam Cohen

Interaction of Epe1 With the Heterochromatin Assembly Pathway in Schizosaccharomyces pombe
Genetics 2007; 175(4): 1549-1560 [Abstract] [Full Text]  

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X. H. Hu, M. H. Wang, T. Tan, J. R. Li, H. Yang, L. Leach, R. M. Zhang, and Z. W. Luo

Genetic Dissection of Ethanol Tolerance in the Budding Yeast Saccharomyces cerevisiae
Genetics 2007; 175(3): 1479-1487 [Abstract] [Full Text]  

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Brad Foley, Stephen F. Chenoweth, Sergey V. Nuzhdin, and Mark W. Blows

Natural Genetic Variation in Cuticular Hydrocarbon Expression in Male and Female Drosophila melanogaster
Genetics 2007; 175(3): 1465-1477 [Abstract] [Full Text]  

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Marilyn A. L. West, Kyunga Kim, Daniel J. Kliebenstein, Hans van Leeuwen, Richard W. Michelmore, R. W. Doerge, and Dina A. St. Clair

Global eQTL Mapping Reveals the Complex Genetic Architecture of Transcript-Level Variation in Arabidopsis
Genetics 2007; 175(3): 1441-1450 [Abstract] [Full Text]  

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Zhongying Zhao, James H. Thomas, Nansheng Chen, Jonathan A. Sheps, and David L. Baillie

Comparative Genomics and Adaptive Selection of the ATP-Binding-Cassette Gene Family in Caenorhabditis Species
Genetics 2007; 175(3): 1407-1418 [Abstract] [Full Text]  

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Sylvain Billiard, Vincent Castric, and Xavier Vekemans

A General Model to Explore Complex Dominance Patterns in Plant Sporophytic Self-Incompatibility Systems
Genetics 2007; 175(3): 1351-1369 [Abstract] [Full Text]  

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Kevin P. Byrne and Kenneth H. Wolfe

Consistent Patterns of Rate Asymmetry and Gene Loss Indicate Widespread Neofunctionalization of Yeast Genes After Whole-Genome Duplication
Genetics 2007; 175(3): 1341-1350 [Abstract] [Full Text]  

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Yusuke Takehana, Diana Demiyah, Kiyoshi Naruse, Satoshi Hamaguchi, and Mitsuru Sakaizumi

Evolution of Different Y Chromosomes in Two Medaka Species, Oryzias dancena and O. latipes
Genetics 2007; 175(3): 1335-1340 [Abstract] [Full Text]  

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Laura E. Rose, Richard W. Michelmore, and Charles H. Langley

Natural Variation in the Pto Disease Resistance Gene Within Species of Wild Tomato (Lycopersicon). II. Population Genetics of Pto
Genetics 2007; 175(3): 1307-1319 [Abstract] [Full Text]  

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Lingzhi Liu, Ronald L. Davis, and Gregg Roman

Exploratory Activity in Drosophila Requires the kurtz Nonvisual Arrestin
Genetics 2007; 175(3): 1197-1212 [Abstract] [Full Text]  

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Lei Zhuang, Jun Zhang, and Xin Xiang

Point Mutations in the Stem Region and the Fourth AAA Domain of Cytoplasmic Dynein Heavy Chain Partially Suppress the Phenotype of NUDF/LIS1 Loss in Aspergillus nidulans
Genetics 2007; 175(3): 1185-1196 [Abstract] [Full Text]  

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Laura Lombardi, Kevin Schneider, Michelle Tsukamoto, and Stuart Brody

Circadian Rhythms in Neurospora crassa: Clock Mutant Effects in the Absence of a frq-Based Oscillator
Genetics 2007; 175(3): 1175-1183 [Abstract] [Full Text]  

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Dwaipayan Ganguli, Chitranshu Kumar, and Anand Kumar Bachhawat

The Alternative Pathway of Glutathione Degradation Is Mediated by a Novel Protein Complex Involving Three New Genes in Saccharomyces cerevisiae
Genetics 2007; 175(3): 1137-1151 [Abstract] [Full Text]  

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Nayan J. Sarma, Terry M. Haley, Kellie E. Barbara, Thomas D. Buford, Kristine A. Willis, and George M. Santangelo

Glucose-Responsive Regulators of Gene Expression in Saccharomyces cerevisiae Function at the Nuclear Periphery via a Reverse Recruitment Mechanism
Genetics 2007; 175(3): 1127-1135 [Abstract] [Full Text]  

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Ana T. Quiñones-Coello, Lisa N. Petrella, Kathleen Ayers, Anthony Melillo, Stacy Mazzalupo, Andrew M. Hudson, Shu Wang, Claudia Castiblanco, Michael Buszczak, Roger A. Hoskins, and Lynn Cooley

Exploring Strategies for Protein Trapping in Drosophila
Genetics 2007; 175(3): 1089-1104 [Abstract] [Full Text]  

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Jennifer L. Chisa and David T. Burke

Mammalian mRNA Splice-Isoform Selection Is Tightly Controlled
Genetics 2007; 175(3): 1079-1087 [Abstract] [Full Text]  

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Rajandeep S. Sekhon, Thomas Peterson, and Surinder Chopra

Epigenetic Modifications of Distinct Sequences of the p1 Regulatory Gene Specify Tissue-Specific Expression Patterns in Maize
Genetics 2007; 175(3): 1059-1070 [Abstract] [Full Text]  

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Jeannine R. LaRocque, Burnley Jaklevic, Tin Tin Su, and Jeff Sekelsky

Drosophila ATR in Double-Strand Break Repair
Genetics 2007; 175(3): 1023-1033 [Abstract] [Full Text]  

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Amy E. Ikui, Vincent Archambault, Benjamin J. Drapkin, Veronica Campbell, and Frederick R. Cross

Cyclin and Cyclin-Dependent Kinase Substrate Requirements for Preventing Rereplication Reveal the Need for Concomitant Activation and Inhibition
Genetics 2007; 175(3): 1011-1022 [Abstract] [Full Text]  

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Clara C. Reis and Judith L. Campbell

Contribution of Trf4/5 and the Nuclear Exosome to Genome Stability Through Regulation of Histone mRNA Levels in Saccharomyces cerevisiae
Genetics 2007; 175(3): 993-1010 [Abstract] [Full Text]  

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Ling Bai, Manjit Singh, Lauren Pitt, Meredith Sweeney, and Thomas P. Brutnell

Generating Novel Allelic Variation Through Activator Insertional Mutagenesis in Maize
Genetics 2007; 175(3): 981-992 [Abstract] [Full Text]  

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Masashi Sekino and Motoyuki Hara

Linkage Maps for the Pacific Abalone (Genus Haliotis) Based on Microsatellite DNA Markers
Genetics 2007; 175(2): 945-958 [Abstract] [Full Text]  

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Yuanfang Guan, Maitreya J. Dunham, and Olga G. Troyanskaya

Functional Analysis of Gene Duplications in Saccharomyces cerevisiae
Genetics 2007; 175(2): 933-943 [Abstract] [Full Text]  

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Dawei Li and Lin He

G72/G30 Genes and Schizophrenia: A Systematic Meta-analysis of Association Studies
Genetics 2007; 175(2): 917-922 [Abstract] [Full Text]  

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Chun Ming Wang, Ze Yuan Zhu, Loong Chueng Lo, Felicia Feng, Grace Lin, Wen Tong Yang, Jian Li, and Gen Hua Yue

A Microsatellite Linkage Map of Barramundi, Lates calcarifer
Genetics 2007; 175(2): 907-915 [Abstract] [Full Text]  

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Joost J. B. Keurentjes, Leónie Bentsink, Carlos Alonso-Blanco, Corrie J. Hanhart, Hetty Blankestijn-De Vries, Sigi Effgen, Dick Vreugdenhil, and Maarten Koornneef

Development of a Near-Isogenic Line Population of Arabidopsis thaliana and Comparison of Mapping Power With a Recombinant Inbred Line Population
Genetics 2007; 175(2): 891-905 [Abstract] [Full Text]  

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Ulrika Gunnarsson, Anders R. Hellström, Michele Tixier-Boichard, Francis Minvielle, Bertrand Bed'hom, Shin'ichi Ito, Per Jensen, Annemieke Rattink, Addie Vereijken, and Leif Andersson

Mutations in SLC45A2 Cause Plumage Color Variation in Chicken and Japanese Quail
Genetics 2007; 175(2): 867-877 [Abstract] [Full Text]  

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Cristina E. Popescu and Robert W. Lee

Mitochondrial Genome Sequence Evolution in Chlamydomonas
Genetics 2007; 175(2): 819-826 [Abstract] [Full Text]  

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Silke Stracke, Thomas Presterl, Nils Stein, Dragan Perovic, Frank Ordon, and Andreas Graner

Effects of Introgression and Recombination on Haplotype Structure and Linkage Disequilibrium Surrounding a Locus Encoding Bymovirus Resistance in Barley
Genetics 2007; 175(2): 805-817 [Abstract] [Full Text]  

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Vanessa J. Clark, Susan E. Ptak, Irene Tiemann, Yudong Qian, Graham Coop, Anne C. Stone, Molly Przeworski, Norman Arnheim, and Anna Di Rienzo

Combining Sperm Typing and Linkage Disequilibrium Analyses Reveals Differences in Selective Pressures or Recombination Rates Across Human Populations
Genetics 2007; 175(2): 795-804 [Abstract] [Full Text]  

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Jacob L. Mueller, Jennifer L. Page, and Mariana F. Wolfner

An Ectopic Expression Screen Reveals the Protective and Toxic Effects of Drosophila Seminal Fluid Proteins
Genetics 2007; 175(2): 777-783 [Abstract] [Full Text]  

Article supplement(s): [Data Supplement]

Bo Peng and Marek Kimmel

Simulations Provide Support for the Common Disease–Common Variant Hypothesis
Genetics 2007; 175(2): 763-776 [Abstract] [Full Text]  

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Alexander E. Yawson, David Weetman, Michael D. Wilson, and Martin J. Donnelly

Ecological Zones Rather Than Molecular Forms Predict Genetic Differentiation in the Malaria Vector Anopheles gambiae s.s. in Ghana
Genetics 2007; 175(2): 751-761 [Abstract] [Full Text]  

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Jack Favor, Christian Johannes Gloeckner, Dirk Janik, Martina Klempt, Angelika Neuhäuser-Klaus, Walter Pretsch, Wolfgang Schmahl, and Leticia Quintanilla-Fend

Type IV Procollagen Missense Mutations Associated With Defects of the Eye, Vascular Stability, the Brain, Kidney Function and Embryonic or Postnatal Viability in the Mouse, Mus musculus: An Extension of the Col4a1 Allelic Series and the Identification of the First Two Col4a2 Mutant Alleles
Genetics 2007; 175(2): 725-736 [Abstract] [Full Text]  

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Samuel Liégeois, Alexandre Benedetto, Grégoire Michaux, Guillaume Belliard, and Michel Labouesse

Genes Required for Osmoregulation and Apical Secretion in Caenorhabditis elegans
Genetics 2007; 175(2): 709-724 [Abstract] [Full Text]  

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Gareth R. Howell, Mami Shindo, Stephen Murray, Thomas Gridley, Lawriston A. Wilson, and John C. Schimenti

Mutation of a Ubiquitously Expressed Mouse Transmembrane Protein (Tapt1) Causes Specific Skeletal Homeotic Transformations
Genetics 2007; 175(2): 699-707 [Abstract] [Full Text]  

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Nicola Haines and Bryan A. Stewart

Functional Roles for ß1,4-N-Acetlygalactosaminyltransferase-A in Drosophila Larval Neurons and Muscles
Genetics 2007; 175(2): 671-679 [Abstract] [Full Text]  

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Rachel Tompa and Hiten D. Madhani

Histone H3 Lysine 36 Methylation Antagonizes Silencing in Saccharomyces cerevisiae Independently of the Rpd3S Histone Deacetylase Complex
Genetics 2007; 175(2): 585-593 [Abstract] [Full Text]  

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Chiaki Noguchi and Eishi Noguchi

Sap1 Promotes the Association of the Replication Fork Protection Complex With Chromatin and Is Involved in the Replication Checkpoint in Schizosaccharomyces pombe
Genetics 2007; 175(2): 553-566 [Abstract] [Full Text]  

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Jianxun Feng, Hongsheng Wang, and Herbert C. Morse III

Functional Deficiency in IL-7 Caused by an N-Ethyl-N-nitrosourea-Induced Point Mutation
Genetics 2007; 175(2): 545-551 [Abstract] [Full Text]  

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Kimberly A. Collins, Raymond Camahort, Chris Seidel, Jennifer L. Gerton, and Sue Biggins

The Overexpression of a Saccharomyces cerevisiae Centromeric Histone H3 Variant Mutant Protein Leads to a Defect in Kinetochore Biorientation
Genetics 2007; 175(2): 513-525 [Abstract] [Full Text]  

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Mónica Pradillo, Eva López, Concepción Romero, Eugenio Sánchez-Morán, Nieves Cuñado, and Juan L. Santos

An Analysis of Univalent Segregation in Meiotic Mutants of Arabidopsis thaliana: A Possible Role for Synaptonemal Complex
Genetics 2007; 175(2): 505-511 [Abstract] [Full Text]  

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Scott J. Emrich, Li Li, Tsui-Jung Wen, Marna D. Yandeau-Nelson, Yan Fu, Ling Guo, Hui-Hsien Chou, Srinivas Aluru, Daniel A. Ashlock, and Patrick S. Schnable

Nearly Identical Paralogs: Implications for Maize (Zea mays L.) Genome Evolution
Genetics 2007; 175(1): 429-439 [Abstract] [Full Text]  

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Santiago C. González-Martínez, Nicholas C. Wheeler, Elhan Ersoz, C. Dana Nelson, and David B. Neale

Association Genetics in Pinus taeda L. I. Wood Property Traits
Genetics 2007; 175(1): 399-409 [Abstract] [Full Text]  

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Seanna J. McTaggart, Jeffry L. Dudycha, Angela Omilian, and Teresa J. Crease

Rates of Recombination in the Ribosomal DNA of Apomictically Propagated Daphnia obtusa Lines
Genetics 2007; 175(1): 311-320 [Abstract] [Full Text]  

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Jan Engelstädter and Gregory D. D. Hurst

The Impact of Male-Killing Bacteria on Host Evolutionary Processes
Genetics 2007; 175(1): 245-254 [Abstract] [Full Text]  

Article supplement(s): [Corrigendum]

Thomas Wiehe, Viola Nolte, Daniel Zivkovic, and Christian Schlötterer

Identification of Selective Sweeps Using a Dynamically Adjusted Number of Linked Microsatellites
Genetics 2007; 175(1): 207-218 [Abstract] [Full Text]  

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Jung Kyoon Choi, Sang Cheol Kim, Jungmin Seo, Sangsoo Kim, and Jong Bhak

Impact of Transcriptional Properties on Essentiality and Evolutionary Rate
Genetics 2007; 175(1): 199-206 [Abstract] [Full Text]  

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Josefa González, Ferran Casals, and Alfredo Ruiz

Testing Chromosomal Phylogenies and Inversion Breakpoint Reuse in Drosophila
Genetics 2007; 175(1): 167-177 [Abstract] [Full Text]  

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Kathryn L. Pepple, Aimée E. Anderson, Benjamin J. Frankfort, and Graeme Mardon

A Genetic Screen in Drosophila for Genes Interacting With senseless During Neuronal Development Identifies the Importin moleskin
Genetics 2007; 175(1): 125-141 [Abstract] [Full Text]  

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Antony M. Jose, I. Amy Bany, Daniel L. Chase, and Michael R. Koelle

A Specific Subset of Transient Receptor Potential Vanilloid-Type Channel Subunits in Caenorhabditis elegans Endocrine Cells Function as Mixed Heteromers to Promote Neurotransmitter Release
Genetics 2007; 175(1): 93-105 [Abstract] [Full Text]  

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Susan K. Amundsen and Gerald R. Smith

Chi Hotspot Activity in Escherichia coli Without RecBCD Exonuclease Activity: Implications for the Mechanism of Recombination
Genetics 2007; 175(1): 41-54 [Abstract] [Full Text]  

Article supplement(s): [Data Supplement]

Weichang Yu, Jonathan C. Lamb, Fangpu Han, and James A. Birchler

Cytological Visualization of DNA Transposons and Their Transposition Pattern in Somatic Cells of Maize
Genetics 2007; 175(1): 31-39 [Abstract] [Full Text]  

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Genetics 2007; 175(1): 1-457  

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