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Genetics Supplementary Material -- 2006

Supplementary material related to the following articles is available online:

Luciano Calzari, Ivan Orlandi, Lilia Alberghina, and Marina Vai
The Histone Deubiquitinating Enzyme Ubp10 Is Involved in rDNA Locus Control in Saccharomyces cerevisiae by Affecting Sir2p Association
Genetics 2006; 174(4): 2249-2254 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Lei Nie, Gang Wu, and Weiwen Zhang
Correlation of mRNA Expression and Protein Abundance Affected by Multiple Sequence Features Related to Translational Efficiency in Desulfovibrio vulgaris: A Quantitative Analysis
Genetics 2006; 174(4): 2229-2243 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Dawn Holligan, Xiaoyu Zhang, Ning Jiang, Ellen J. Pritham, and Susan R. Wessler
The Transposable Element Landscape of the Model Legume Lotus japonicus
Genetics 2006; 174(4): 2215-2228 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Soon Jin Lee, Jun Liu, Allison M. Westcott, Joshua A. Vieth, Sarah J. DeRaedt, Siming Yang, Bina Joe, and George T. Cicila
Substitution Mapping in Dahl Rats Identifies Two Distinct Blood Pressure Quantitative Trait Loci Within 1.12- and 1.25-Mb Intervals on Chromosome 3
Genetics 2006; 174(4): 2203-2213 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Juliette de Meaux, A. Pop, and T. Mitchell-Olds
Cis-regulatory Evolution of Chalcone-Synthase Expression in the Genus Arabidopsis
Genetics 2006; 174(4): 2181-2202 [Abstract] [Full Text]  
Article supplement(s): [Supplement to de Meaux el at. 2006]

Mattieu Bégin and Daniel J. Schoen
Low Impact of Germline Transposition on the Rate of Mildly Deleterious Mutation in Caenorhabditis elegans
Genetics 2006; 174(4): 2129-2136 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Ana Ojeda, Julio Rozas, Josep M. Folch, and Miguel Pérez-Enciso
Unexpected High Polymorphism at the FABP4 Gene Unveils a Complex History for Pig Populations
Genetics 2006; 174(4): 2119-2127 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Wayne Delport, Michael Cunningham, Brenda Olivier, Oliver Preisig, and Schalk W. van der Merwe
A Population Genetics Pedigree Perspective on the Transmission of Helicobacter pylori
Genetics 2006; 174(4): 2107-2118 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Myriam Heuertz, Emanuele De Paoli, Thomas Källman, Hanna Larsson, Irena Jurman, Michele Morgante, Martin Lascoux, and Niclas Gyllenstrand
Multilocus Patterns of Nucleotide Diversity, Linkage Disequilibrium and Demographic History of Norway Spruce [Picea abies (L.) Karst]
Genetics 2006; 174(4): 2095-2105 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Rowan D. H. Barrett, Leithen K. M'Gonigle, and Sarah P. Otto
The Distribution of Beneficial Mutant Effects Under Strong Selection
Genetics 2006; 174(4): 2071-2079 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Carolina Bartolomé and Brian Charlesworth
Evolution of Amino-Acid Sequences and Codon Usage on the Drosophila miranda Neo-Sex Chromosomes
Genetics 2006; 174(4): 2033-2044 [Abstract] [Full Text]  
Article supplement(s): [Supplement to Bartolome and Charlesworth 2006]

Daniel Wegmann, Mathias Currat, and Laurent Excoffier
Molecular Diversity After a Range Expansion in Heterogeneous Environments
Genetics 2006; 174(4): 2009-2020 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Thomas L. Jacobsen, Donna Cain, Litty Paul, Steven Justiniano, Anwar Alli, Jeremi S. Mullins, Chun Ping Wang, Jon P. Butchar, and Amanda Simcox
Functional Analysis of Genes Differentially Expressed in the Drosophila Wing Disc: Role of Transcripts Enriched in the Wing Region
Genetics 2006; 174(4): 1973-1982 [Abstract] [Full Text]  
Article supplement(s): [Supplement to Jacobsen et al. 2006]

Burnley Jaklevic, Lyle Uyetake, Willy Lemstra, Julia Chang, William Leary, Anthony Edwards, Smruti Vidwans, Ody Sibon, and Tin Tin Su
Contribution of Growth and Cell Cycle Checkpoints to Radiation Survival in Drosophila
Genetics 2006; 174(4): 1963-1972 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Colin P. C. De Souza, Shahr B. Hashmi, Kevin P. Horn, and Stephen A. Osmani
A Point Mutation in the Aspergillus nidulans sonBNup98 Nuclear Pore Complex Gene Causes Conditional DNA Damage Sensitivity
Genetics 2006; 174(4): 1881-1893 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Xinxian Deng and Victoria H. Meller
roX RNAs Are Required for Increased Expression of X-Linked Genes in Drosophila melanogaster Males
Genetics 2006; 174(4): 1859-1866 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Rebekah A. Rampey, Andrew W. Woodward, Brianne N. Hobbs, Megan P. Tierney, Brett Lahner, David E. Salt, and Bonnie Bartel
An Arabidopsis Basic Helix-Loop-Helix Leucine Zipper Protein Modulates Metal Homeostasis and Auxin Conjugate Responsiveness
Genetics 2006; 174(4): 1841-1857 [Abstract] [Full Text]  
Article supplement(s): [Supplement to Rampey et al. 2006]

Xaralabos Varelas, David Stuart, Michael J. Ellison, and Christopher Ptak
The Cdc34/SCF Ubiquitination Complex Mediates Saccharomyces cerevisiae Cell Wall Integrity
Genetics 2006; 174(4): 1825-1839 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

William R. Swindell
The Association Among Gene Expression Responses to Nine Abiotic Stress Treatments in Arabidopsis thaliana
Genetics 2006; 174(4): 1811-1824 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Muhammad Attiq Rehman, Genevieve Fourel, Amit Mathews, Danielle Ramdin, Maria Espinosa, Eric Gilson, and Krassimir Yankulov
Differential Requirement of DNA Replication Factors for Subtelomeric ARS Consensus Sequence Protosilencers in Saccharomyces cerevisiae
Genetics 2006; 174(4): 1801-1810 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Leslie Barbour, Lindsay G. Ball, Ke Zhang, and Wei Xiao
DNA Damage Checkpoints Are Involved in Postreplication Repair
Genetics 2006; 174(4): 1789-1800 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement] [Data Supplement]

William F. Sheridan and Donald L. Auger
Construction and Uses of New Compound B-A-A Maize Chromosome Translocations
Genetics 2006; 174(4): 1755-1765 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Yan Fu, Tsui-Jung Wen, Yefim I. Ronin, Hsin D. Chen, Ling Guo, David I. Mester, Yongjie Yang, Michael Lee, Abraham B. Korol, Daniel A. Ashlock, and Patrick S. Schnable
Genetic Dissection of Intermated Recombinant Inbred Lines Using a New Genetic Map of Maize
Genetics 2006; 174(3): 1671-1683 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Zhiqian Liu, Katarzyna Adamczyk, Maria Manzanares-Dauleux, Frédérique Eber, Marie-Odile Lucas, Régine Delourme, Anne Marie Chèvre, and Eric Jenczewski
Mapping PrBn and Other Quantitative Trait Loci Responsible for the Control of Homeologous Chromosome Pairing in Oilseed Rape (Brassica napus L.) Haploids
Genetics 2006; 174(3): 1583-1596 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Brian P. Lazzaro, Timothy B. Sackton, and Andrew G. Clark
Genetic Variation in Drosophila melanogaster Resistance to Infection: A Comparison Across Bacteria
Genetics 2006; 174(3): 1539-1554 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Yong Qiang Gu, Jérôme Salse, Devin Coleman-Derr, Adeline Dupin, Curt Crossman, Gerard R. Lazo, Naxin Huo, Harry Belcram, Catherine Ravel, Gilles Charmet, Mathieu Charles, Olin D. Anderson, and Boulos Chalhoub
Types and Rates of Sequence Evolution at the High-Molecular-Weight Glutenin Locus in Hexaploid Wheat and Its Ancestral Genomes
Genetics 2006; 174(3): 1493-1504 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Richard E. Baker and Kelly Rogers
Phylogenetic Analysis of Fungal Centromere H3 Proteins
Genetics 2006; 174(3): 1481-1492 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

T. Katz Ezov, E. Boger-Nadjar, Z. Frenkel, I. Katsperovski, S. Kemeny, E. Nevo, A. Korol, and Y. Kashi
Molecular-Genetic Biodiversity in a Natural Population of the Yeast Saccharomyces cerevisiae From "Evolution Canyon": Microsatellite Polymorphism, Ploidy and Controversial Sexual Status
Genetics 2006; 174(3): 1455-1468 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

C. T. T. Edwards, E. C. Holmes, O. G. Pybus, D. J. Wilson, R. P. Viscidi, E. J. Abrams, R. E. Phillips, and A. J. Drummond
Evolution of the Human Immunodeficiency Virus Envelope Gene Is Dominated by Purifying Selection
Genetics 2006; 174(3): 1441-1453 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Kai Zeng, Yun-Xin Fu, Suhua Shi, and Chung-I Wu
Statistical Tests for Detecting Positive Selection by Utilizing High-Frequency Variants
Genetics 2006; 174(3): 1431-1439 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Stephen I. Wright, John Paul Foxe, Leah DeRose-Wilson, Akira Kawabe, Mark Looseley, Brandon S. Gaut, and Deborah Charlesworth
Testing for Effects of Recombination Rate on Nucleotide Diversity in Natural Populations of Arabidopsis lyrata
Genetics 2006; 174(3): 1421-1430 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Feinan Wu, Lukas A. Mueller, Dominique Crouzillat, Vincent Pétiard, and Steven D. Tanksley
Combining Bioinformatics and Phylogenetics to Identify Large Sets of Single-Copy Orthologous Genes (COSII) for Comparative, Evolutionary and Systematic Studies: A Test Case in the Euasterid Plant Clade
Genetics 2006; 174(3): 1407-1420 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Charles F. Baer, Naomi Phillips, Dejerianne Ostrow, Arián Avalos, Dustin Blanton, Ashley Boggs, Thomas Keller, Laura Levy, and Edward Mezerhane
Cumulative Effects of Spontaneous Mutations for Fitness in Caenorhabditis: Role of Genotype, Environment and Stress
Genetics 2006; 174(3): 1387-1395 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Deepa Sambandan, Akihiko Yamamoto, Juan-José Fanara, Trudy F. C. Mackay, and Robert R. H. Anholt
Dynamic Genetic Interactions Determine Odor-Guided Behavior in Drosophila melanogaster
Genetics 2006; 174(3): 1349-1363 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Maike Claußen, Rafael Koch, Zhao-Yang Jin, and Beat Suter
Functional Characterization of Drosophila Translin and Trax
Genetics 2006; 174(3): 1337-1347 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Alicia M. Celotto, Adam C. Frank, Jacquelyn L. Seigle, and Michael J. Palladino
Drosophila Model of Human Inherited Triosephosphate Isomerase Deficiency Glycolytic Enzymopathy
Genetics 2006; 174(3): 1237-1246 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Jessica J. Nadler, Fei Zou, Hanwen Huang, Sheryl S. Moy, Jean Lauder, Jacqueline N. Crawley, David W. Threadgill, Fred A. Wright, and Terry R. Magnuson
Large-Scale Gene Expression Differences Across Brain Regions and Inbred Strains Correlate With a Behavioral Phenotype
Genetics 2006; 174(3): 1229-1236 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Alexander Emelyanov, Yuan Gao, Naweed Isaak Naqvi, and Serguei Parinov
Trans-Kingdom Transposition of the Maize Dissociation Element
Genetics 2006; 174(3): 1095-1104 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Sara F. Sarkar, Jeffrey S. Gordon, Gregory B. Martin, and David S. Guttman
Comparative Genomics of Host-Specific Virulence in Pseudomonas syringae
Genetics 2006; 174(2): 1041-1056 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Ioannis M. Stylianou, Shirng-Wern Tsaih, Keith DiPetrillo, Naoki Ishimori, Renhua Li, Beverly Paigen, and Gary Churchill
Complex Genetic Architecture Revealed by Analysis of High-Density Lipoprotein Cholesterol in Chromosome Substitution Strains and F2 Crosses
Genetics 2006; 174(2): 999-1007 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Rafaella Franch, Bruno Louro, Matina Tsalavouta, Dimitris Chatziplis, Costas S. Tsigenopoulos, Elena Sarropoulou, Jenny Antonello, Andonis Magoulas, Constantinos C. Mylonas, Massimiliano Babbucci, Tomaso Patarnello, Deborah M. Power, Giorgos Kotoulas, and Luca Bargelloni
A Genetic Linkage Map of the Hermaphrodite Teleost Fish Sparus aurata L.
Genetics 2006; 174(2): 851-861 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Jun Xu, Bhylahalli P. Srinivas, Shang Yew Tay, Alicia Mak, Xianwen Yu, Serene G. P. Lee, Henry Yang, Kunde R. Govindarajan, Bernard Leong, Guillaume Bourque, Sinnakarupan Mathavan, and Sudipto Roy
Genomewide Expression Profiling in the Zebrafish Embryo Identifies Target Genes Regulated by Hedgehog Signaling During Vertebrate Development
Genetics 2006; 174(2): 735-752 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Meghal Gandhi, Bruce L. Goode, and Clarence S. M. Chan
Four Novel Suppressors of gic1 gic2 and Their Roles in Cytokinesis and Polarized Cell Growth in Saccharomyces cerevisiae
Genetics 2006; 174(2): 665-678 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Marisa Wagner, Gavrielle Price, and Rodney Rothstein
The Absence of Top3 Reveals an Interaction Between the Sgs1 and Pif1 DNA Helicases in Saccharomyces cerevisiae
Genetics 2006; 174(2): 555-573 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Yeon-Kyeong Yoo, Xiayi Ke, Sungwoo Hong, Hye-Yoon Jang, Kyunghee Park, Sook Kim, TaeJin Ahn, Yeun-Du Lee, Okryeol Song, Na-Young Rho, Moon Sue Lee, Yeon-Su Lee, Jaeheup Kim, Young J. Kim, Jun-Mo Yang, Kyuyoung Song, Kyuchan Kimm, Bruce Weir, Lon R. Cardon, Jong-Eun Lee, and Jung-Joo Hwang
Fine-Scale Map of Encyclopedia of DNA Elements Regions in the Korean Population
Genetics 2006; 174(1): 491-497 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Lesley A. Sawyer, Federica Sandrelli, Carlo Pasetto, Alexandre A. Peixoto, Ezio Rosato, Rodolfo Costa, and Charalambos P. Kyriacou
The period Gene Thr-Gly Polymorphism in Australian and African Drosophila melanogaster Populations: Implications for Selection
Genetics 2006; 174(1): 465-480 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Ben Hayes, Nina Hagesæther, Tormod Ådnøy, Grunde Pellerud, Paul R. Berg, and Sigbjørn Lien
Effects on Production Traits of Haplotypes Among Casein Genes in Norwegian Goats and Evidence for a Site of Preferential Recombination
Genetics 2006; 174(1): 455-464 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Jill C. Preston and Elizabeth A. Kellogg
Reconstructing the Evolutionary History of Paralogous APETALA1/FRUITFULL-Like Genes in Grasses (Poaceae)
Genetics 2006; 174(1): 421-437 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Muralidhar Metta, Rambabu Gudavalli, Jean-Michel Gibert, and Christian Schlötterer
No Accelerated Rate of Protein Evolution in Male-Biased Drosophila pseudoobscura Genes
Genetics 2006; 174(1): 411-420 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Zhongming Zhao, Ning Yu, Yun-Xin Fu, and Wen-Hsiung Li
Nucleotide Variation and Haplotype Diversity in a 10-kb Noncoding Region in Three Continental Human Populations
Genetics 2006; 174(1): 399-409 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Ovidiu Paun and Elvira Hörandl
Evolution of Hypervariable Microsatellites in Apomictic Polyploid Lineages of Ranunculus carpaticola: Directional Bias at Dinucleotide Loci
Genetics 2006; 174(1): 387-398 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Niclas Backström, Mikael Brandström, Lars Gustafsson, Anna Qvarnström, Hans Cheng, and Hans Ellegren
Genetic Mapping in a Natural Population of Collared Flycatchers (Ficedula albicollis): Conserved Synteny but Gene Order Rearrangements on the Avian Z Chromosome
Genetics 2006; 174(1): 377-386 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Mariana Mateos, Sergio J. Castrezana, Becky J. Nankivell, Anne M. Estes, Therese A. Markow, and Nancy A. Moran
Heritable Endosymbionts of Drosophila
Genetics 2006; 174(1): 363-376 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Wen-Ya Ko, Shengfu Piao, and Hiroshi Akashi
Strong Regional Heterogeneity in Base Composition Evolution on the Drosophila X Chromosome
Genetics 2006; 174(1): 349-362 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Jean-Claude Labbé, Anne Pacquelet, Thomas Marty, and Monica Gotta
A Genomewide Screen for Suppressors of par-2 Uncovers Potential Regulators of PAR Protein-Dependent Cell Polarity in Caenorhabditis elegans
Genetics 2006; 174(1): 285-295 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Katherine W. Jordan, Theodore J. Morgan, and Trudy F. C. Mackay
Quantitative Trait Loci for Locomotor Behavior in Drosophila melanogaster
Genetics 2006; 174(1): 271-284 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Cristina Benedetti, Cole M. Haynes, Yun Yang, Heather P. Harding, and David Ron
Ubiquitin-Like Protein 5 Positively Regulates Chaperone Gene Expression in the Mitochondrial Unfolded Protein Response
Genetics 2006; 174(1): 229-239 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Kathryn L. Auld, Amy L. Hitchcock, Hugh K. Doherty, Seth Frietze, Linda S. Huang, and Pamela A. Silver
The Conserved ATPase Get3/Arr4 Modulates the Activity of Membrane-Associated Proteins in Saccharomyces cerevisiae
Genetics 2006; 174(1): 215-227 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Brandon S. J. Davies and Jasper Rine
A Role for Sterol Levels in Oxygen Sensing in Saccharomyces cerevisiae
Genetics 2006; 174(1): 191-201 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Maria L. Federico, Federico L. Iñiguez-Luy, Ronald W. Skadsen, and Heidi F. Kaeppler
Spatial and Temporal Divergence of Expression in Duplicated Barley Germin-Like Protein-Encoding Genes
Genetics 2006; 174(1): 179-190 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Luther Davis and Gerald R. Smith
The Meiotic Bouquet Promotes Homolog Interactions and Restricts Ectopic Recombination in Schizosaccharomyces pombe
Genetics 2006; 174(1): 167-177 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Teresa M. Calonge and Matthew J. O'Connell
Antagonism of Chk1 Signaling in the G2 DNA Damage Checkpoint by Dominant Alleles of Cdr1
Genetics 2006; 174(1): 113-123 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Mehar S. Khatkar, Andrew Collins, Julie A. L. Cavanagh, Rachel J. Hawken, Matthew Hobbs, Kyall R. Zenger, Wes Barris, Alexander E. McClintock, Peter C. Thomson, Frank W. Nicholas, and Herman W. Raadsma
A First-Generation Metric Linkage Disequilibrium Map of Bovine Chromosome 6
Genetics 2006; 174(1): 79-85 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Dee R. Denver, Seth Feinberg, Catherine Steding, Matthew Durbin, and Michael Lynch
The Relative Roles of Three DNA Repair Pathways in Preventing Caenorhabditis elegans Mutation Accumulation
Genetics 2006; 174(1): 57-65 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Jung Sun Kim, Tae Young Chung, Graham J. King, Mina Jin, Tae-Jin Yang, Yong-Moon Jin, Ho-Il Kim, and Beom-Seok Park
A Sequence-Tagged Linkage Map of Brassica rapa
Genetics 2006; 174(1): 29-39 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Robert M. Stupar and Nathan M. Springer
Cis-transcriptional Variation in Maize Inbred Lines B73 and Mo17 Leads to Additive Expression Patterns in the F1 Hybrid
Genetics 2006; 173(4): 2199-2210 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

K. L. Bubb, D. Bovee, D. Buckley, E. Haugen, M. Kibukawa, M. Paddock, A. Palmieri, S. Subramanian, Y. Zhou, R. Kaul, P. Green, and M. V. Olson
Scan of Human Genome Reveals No New Loci Under Ancient Balancing Selection
Genetics 2006; 173(4): 2165-2177 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Joshua A. Udall, Jordan M. Swanson, Dan Nettleton, Ryan J. Percifield, and Jonathan F. Wendel
A Novel Approach for Characterizing Expression Levels of Genes Duplicated by Polyploidy
Genetics 2006; 173(3): 1823-1827 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Patricia J. Wittkopp, Belinda K. Haerum, and Andrew G. Clark
Parent-of-Origin Effects on mRNA Expression in Drosophila melanogaster Not Caused by Genomic Imprinting
Genetics 2006; 173(3): 1817-1821 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Peter L. Morrell, Donna M. Toleno, Karen E. Lundy, and Michael T. Clegg
Estimating the Contribution of Mutation, Recombination and Gene Conversion in the Generation of Haplotypic Diversity
Genetics 2006; 173(3): 1705-1723 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Andrew J. Heidel, Maria J. Clauss, Juergen Kroymann, Outi Savolainen, and Thomas Mitchell-Olds
Natural Variation in MAM Within and Between Populations of Arabidopsis lyrata Determines Glucosinolate Phenotype
Genetics 2006; 173(3): 1629-1636 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Akira Kawabe, Bengt Hansson, Jenny Hagenblad, Alan Forrest, and Deborah Charlesworth
Centromere Locations and Associated Chromosome Rearrangements in Arabidopsis lyrata and A. thaliana
Genetics 2006; 173(3): 1613-1619 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Jennifer A. Tate, Zhongfu Ni, Anne-Cathrine Scheen, Jin Koh, Candace A. Gilbert, David Lefkowitz, Z. Jeffrey Chen, Pamela S. Soltis, and Douglas E. Soltis
Evolution and Expression of Homeologous Loci in Tragopogon miscellus (Asteraceae), a Recent and Reciprocally Formed Allopolyploid
Genetics 2006; 173(3): 1599-1611 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Takuya Nakazato, Min-Kyung Jung, Elizabeth A. Housworth, Loren H. Rieseberg, and Gerald J. Gastony
Genetic Map-Based Analysis of Genome Structure in the Homosporous Fern Ceratopteris richardii
Genetics 2006; 173(3): 1585-1597 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Takashi Shiina, Masao Ota, Sayoko Shimizu, Yoshihiko Katsuyama, Nami Hashimoto, Miwa Takasu, Tatsuya Anzai, Jerzy K. Kulski, Eri Kikkawa, Taeko Naruse, Natsuki Kimura, Kazuyo Yanagiya, Atsushi Watanabe, Kazuyoshi Hosomichi, Sakae Kohara, Chie Iwamoto, Yumi Umehara, Alice Meyer, Valérie Wanner, Kazumi Sano, Cécile Macquin, Kazuho Ikeo, Katsushi Tokunaga, Takashi Gojobori, Hidetoshi Inoko, and Seiamak Bahram
Rapid Evolution of Major Histocompatibility Complex Class I Genes in Primates Generates New Disease Alleles in Humans via Hitchhiking Diversity
Genetics 2006; 173(3): 1555-1570 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Julian K. Christians, Andreas Hoeflich, and Peter D. Keightley
PAPPA2, an Enzyme That Cleaves an Insulin-Like Growth-Factor-Binding Protein, Is a Candidate Gene for a Quantitative Trait Locus Affecting Body Size in Mice
Genetics 2006; 173(3): 1547-1553 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Dario Beraldi, Allan F. McRae, Jacob Gratten, Jon Slate, Peter M. Visscher, and Josephine M. Pemberton
Development of a Linkage Map and Mapping of Phenotypic Polymorphisms in a Free-Living Population of Soay Sheep (Ovis aries)
Genetics 2006; 173(3): 1521-1537 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

B. Hänfling and D. Weetman
Concordant Genetic Estimators of Migration Reveal Anthropogenically Enhanced Source-Sink Population Structure in the River Sculpin, Cottus gobio
Genetics 2006; 173(3): 1487-1501 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Rhonda H. Wilson, Theodore J. Morgan, and Trudy F. C. Mackay
High-Resolution Mapping of Quantitative Trait Loci Affecting Increased Life Span in Drosophila melanogaster
Genetics 2006; 173(3): 1455-1463 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Ian Dworkin and Greg Gibson
Epidermal Growth Factor Receptor and Transforming Growth Factor-ß Signaling Contributes to Variation for Wing Shape in Drosophila melanogaster
Genetics 2006; 173(3): 1417-1431 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Andrew P. Michel, Olga Grushko, Wamdaogo M. Guelbeogo, Neil F. Lobo, N'Fale Sagnon, Carlo Costantini, and Nora J. Besansky
Divergence With Gene Flow in Anopheles funestus From the Sudan Savanna of Burkina Faso, West Africa
Genetics 2006; 173(3): 1389-1395 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Kimberly A. Hughes, Julien F. Ayroles, Melissa M. Reedy, Jenny M. Drnevich, Kevin C. Rowe, Elizabeth A. Ruedi, Carla E. Cáceres, and Ken N. Paige
Segregating Variation in the Transcriptome: Cis Regulation and Additivity of Effects
Genetics 2006; 173(3): 1347-1355 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Torsten Nygaard Kristensen, Peter Sørensen, Kamilla Sofie Pedersen, Mogens Kruhøffer, and Volker Loeschcke
Inbreeding by Environmental Interactions Affect Gene Expression in Drosophila melanogaster
Genetics 2006; 173(3): 1329-1336 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Yuji Yasukochi, Laksmikutty A. Ashakumary, Kotaro Baba, Atsuo Yoshido, and Ken Sahara
A Second-Generation Integrated Map of the Silkworm Reveals Synteny and Conserved Gene Order Between Lepidopteran Insects
Genetics 2006; 173(3): 1319-1328 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Andrew Fire, Rosa Alcazar, and Frederick Tan
Unusual DNA Structures Associated With Germline Genetic Activity in Caenorhabditis elegans
Genetics 2006; 173(3): 1259-1273 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Anders J. Hansen, David L. Mitchell, Carsten Wiuf, Lakshmi Paniker, Tina B. Brand, Jonas Binladen, David A. Gilichinsky, Regin Rønn, and Eske Willerslev
Crosslinks Rather Than Strand Breaks Determine Access to Ancient DNA Sequences From Frozen Sediments
Genetics 2006; 173(2): 1175-1179 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Alan R. Lemmon and Mark Kirkpatrick
Reinforcement and the Genetics of Hybrid Incompatibilities
Genetics 2006; 173(2): 1145-1155 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Warren Albertin, Thierry Balliau, Philippe Brabant, Anne-Marie Chèvre, Frédérique Eber, Christian Malosse, and Hervé Thiellement
Numerous and Rapid Nonstochastic Modifications of Gene Products in Newly Synthesized Brassica napus Allotetraploids
Genetics 2006; 173(2): 1101-1113 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Venu Kalavacharla, Khwaja Hossain, Yong Gu, Oscar Riera-Lizarazu, M. Isabel Vales, Suresh Bhamidimarri, Jose L. Gonzalez-Hernandez, Shivcharan S. Maan, and Shahryar F. Kianian
High-Resolution Radiation Hybrid Map of Wheat Chromosome 1D
Genetics 2006; 173(2): 1089-1099 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Jonathan C. Lamb and James A. Birchler
Retroelement Genome Painting: Cytological Visualization of Retroelement Expansions in the Genera Zea and Tripsacum
Genetics 2006; 173(2): 1007-1021 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Hezi Shaked, Naomi Avivi-Ragolsky, and Avraham A. Levy
Involvement of the Arabidopsis SWI2/SNF2 Chromatin Remodeling Gene Family in DNA Damage Response and Recombination
Genetics 2006; 173(2): 985-994 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Kenneth M. Olsen, Ana L. Caicedo, Nicholas Polato, Anna McClung, Susan McCouch, and Michael D. Purugganan
Selection Under Domestication: Evidence for a Sweep in the Rice Waxy Genomic Region
Genetics 2006; 173(2): 975-983 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Jianlin Wang, Lu Tian, Hyeon-Se Lee, and Z. Jeffrey Chen
Nonadditive Regulation of FRI and FLC Loci Mediates Flowering-Time Variation in Arabidopsis Allopolyploids
Genetics 2006; 173(2): 965-974 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Martha T. Hamblin, Alexandra M. Casa, Hong Sun, Seth C. Murray, Andrew H. Paterson, Charles F. Aquadro, and Stephen Kresovich
Challenges of Detecting Directional Selection After a Bottleneck: Lessons From Sorghum bicolor
Genetics 2006; 173(2): 953-964 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Anatole Ghazalpour, Xuping Wang, Aldons J. Lusis, and Margarete Mehrabian
Complex Inheritance of the 5-Lipoxygenase Locus Influencing Atherosclerosis in Mice
Genetics 2006; 173(2): 943-951 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Inácio L. M. Junqueira-de-Azevedo, Ana T. C. Ching, Eneas Carvalho, Fernanda Faria, Milton Y. Nishiyama Jr., Paulo L. Ho, and Marcelo R. V. Diniz
Lachesis muta (Viperidae) cDNAs Reveal Diverging Pit Viper Molecules and Scaffolds Typical of Cobra (Elapidae) Venoms: Implications for Snake Toxin Repertoire Evolution
Genetics 2006; 173(2): 877-889 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

John J. Welch
Estimating the Genomewide Rate of Adaptive Protein Evolution in Drosophila
Genetics 2006; 173(2): 821-837 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Carolina Bartolomé and Brian Charlesworth
Rates and Patterns of Chromosomal Evolution in Drosophila pseudoobscura and D. miranda
Genetics 2006; 173(2): 779-791 [Abstract] [Full Text]  
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Emmanuelle Baudry, Nicolas Derome, Michèle Huet, and Michel Veuille
Contrasted Polymorphism Patterns in a Large Sample of Populations From the Evolutionary Genetics Model Drosophila simulans
Genetics 2006; 173(2): 759-767 [Abstract] [Full Text]  
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Durrell D. Kapan, Nicola S. Flanagan, Alex Tobler, Riccardo Papa, Robert D. Reed, Jenny Acevedo Gonzalez, Manuel Ramirez Restrepo, Lournet Martinez, Karla Maldonado, Clare Ritschoff, David G. Heckel, and W. Owen McMillan
Localization of Müllerian Mimicry Genes on a Dense Linkage Map of Heliconius erato
Genetics 2006; 173(2): 735-757 [Abstract] [Full Text]  
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Jung-Mi Kim, Ling Lu, Rongzhong Shao, Jaclyn Chin, and Bo Liu
Isolation of Mutations That Bypass the Requirement of the Septation Initiation Network for Septum Formation and Conidiation in Aspergillus nidulans
Genetics 2006; 173(2): 685-696 [Abstract] [Full Text]  
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Leandria C. Hancock, Ryan P. Behta, and John M. Lopes
Genomic Analysis of the Opi– Phenotype
Genetics 2006; 173(2): 621-634 [Abstract] [Full Text]  
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Michael E. Palmer and Marc Lipsitch
The Influence of Hitchhiking and Deleterious Mutation Upon Asexual Mutation Rates
Genetics 2006; 173(1): 461-472 [Abstract] [Full Text]  
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Virginie Orgogozo, Karl W. Broman, and David L. Stern
High-Resolution Quantitative Trait Locus Mapping Reveals Sign Epistasis Controlling Ovariole Number Between Two Drosophila Species
Genetics 2006; 173(1): 197-205 [Abstract] [Full Text]  
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Kimiko Yamamoto, Junko Narukawa, Keiko Kadono-Okuda, Junko Nohata, Motoe Sasanuma, Yoshitaka Suetsugu, Yutaka Banno, Hiroshi Fujii, Marian R. Goldsmith, and Kazuei Mita
Construction of a Single Nucleotide Polymorphism Linkage Map for the Silkworm, Bombyx mori, Based on Bacterial Artificial Chromosome End Sequences
Genetics 2006; 173(1): 151-161 [Abstract] [Full Text]  
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Christopher O. Ortiz, John F. Etchberger, Shoshana L. Posy, Christian Frøkjær-Jensen, Shawn Lockery, Barry Honig, and Oliver Hobert
Searching for Neuronal Left/Right Asymmetry: Genomewide Analysis of Nematode Receptor-Type Guanylyl Cyclases
Genetics 2006; 173(1): 131-149 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Nicole K. Charlie, Angela M. Thomure, Michael A. Schade, and Kenneth G. Miller
The Dunce cAMP Phosphodiesterase PDE-4 Negatively Regulates G{alpha}s-Dependent and G{alpha}s-Independent cAMP Pools in the Caenorhabditis elegans Synaptic Signaling Network
Genetics 2006; 173(1): 111-130 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Krisztian Magori and Fred Gould
Genetically Engineered Underdominance for Manipulation of Pest Populations: A Deterministic Model
Genetics 2006; 172(4): 2613-2620 [Abstract] [Full Text]  
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Jeong-Hwan Mun, Dong-Jin Kim, Hong-Kyu Choi, John Gish, Frédéric Debellé, Joanne Mudge, Roxanne Denny, Gabriella Endré, Oliver Saurat, Anne-Marie Dudez, Gyorgy B. Kiss, Bruce Roe, Nevin D. Young, and Douglas R. Cook
Distribution of Microsatellites in the Genome of Medicago truncatula: A Resource of Genetic Markers That Integrate Genetic and Physical Maps
Genetics 2006; 172(4): 2541-2555 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Ying Wang, Xiaomin Tang, Zhukuan Cheng, Lukas Mueller, Jim Giovannoni, and Steve D. Tanksley
Euchromatin and Pericentromeric Heterochromatin: Comparative Composition in the Tomato Genome
Genetics 2006; 172(4): 2529-2540 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Létizia Camus-Kulandaivelu, Jean-Baptiste Veyrieras, Delphine Madur, Valérie Combes, Marie Fourmann, Stéphanie Barraud, Pierre Dubreuil, Brigitte Gouesnard, Domenica Manicacci, and Alain Charcosset
Maize Adaptation to Temperate Climate: Relationship Between Population Structure and Polymorphism in the Dwarf8 Gene
Genetics 2006; 172(4): 2449-2463 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Yali Xue, Tatiana Zerjal, Weidong Bao, Suling Zhu, Qunfang Shu, Jiujin Xu, Ruofu Du, Songbin Fu, Pu Li, Matthew E. Hurles, Huanming Yang, and Chris Tyler-Smith
Male Demography in East Asia: A North–South Contrast in Human Population Expansion Times
Genetics 2006; 172(4): 2431-2439 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Satoko Kaneko, Ikuko Aki, Kaoru Tsuda, Kazuyuki Mekada, Kazuo Moriwaki, Naoyuki Takahata, and Yoko Satta
Origin and Evolution of Processed Pseudogenes That Stabilize Functional Makorin1 mRNAs in Mice, Primates and Other Mammals
Genetics 2006; 172(4): 2421-2429 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Karim Gharbi, Angélique Gautier, Roy G. Danzmann, Sonia Gharbi, Takashi Sakamoto, Bjørn Høyheim, John B. Taggart, Margaret Cairney, Richard Powell, Francine Krieg, Nobuaki Okamoto, Moira M. Ferguson, Lars-Erik Holm, and René Guyomard
A Linkage Map for Brown Trout (Salmo trutta): Chromosome Homeologies and Comparative Genome Organization With Other Salmonid Fish
Genetics 2006; 172(4): 2405-2419 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Edward Ramos, Dolanchanpa Ghosh, Ellen Baxter, and Victor G. Corces
Genomic Organization of gypsy Chromatin Insulators in Drosophila melanogaster
Genetics 2006; 172(4): 2337-2349 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Valentina Voronkova, Nataly Kacherovsky, Christine Tachibana, Diana Yu, and Elton T. Young
Snf1-Dependent and Snf1-Independent Pathways of Constitutive ADH2 Expression in Saccharomyces cerevisiae
Genetics 2006; 172(4): 2123-2138 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Martin Ligr, Rahul Siddharthan, Fredrick R. Cross, and Eric D. Siggia
Gene Expression From Random Libraries of Yeast Promoters
Genetics 2006; 172(4): 2113-2122 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

J. Arjan G. M. de Visser and Daniel E. Rozen
Clonal Interference and the Periodic Selection of New Beneficial Mutations in Escherichia coli
Genetics 2006; 172(4): 2093-2100 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Damir Ðermic
Functions of Multiple Exonucleases Are Essential for Cell Viability, DNA Repair and Homologous Recombination in recD Mutants of Escherichia coli
Genetics 2006; 172(4): 2057-2069 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Santiago C. González-Martínez, Elhan Ersoz, Garth R. Brown, Nicholas C. Wheeler, and David B. Neale
DNA Sequence Variation and Selection of Tag Single-Nucleotide Polymorphisms at Candidate Genes for Drought-Stress Response in Pinus taeda L.
Genetics 2006; 172(3): 1915-1926 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Timothy Y. James, Prayook Srivilai, Ursula Kües, and Rytas Vilgalys
Evolution of the Bipolar Mating System of the Mushroom Coprinellus disseminatus From Its Tetrapolar Ancestors Involves Loss of Mating-Type-Specific Pheromone Receptor Function
Genetics 2006; 172(3): 1877-1891 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Mohamed E. El-Lithy, Leónie Bentsink, Corrie J. Hanhart, Gerda J. Ruys, Daniela Rovito, José L. M. Broekhof, Hein J. A. van der Poel, Michiel J. T. van Eijk, Dick Vreugdenhil, and Maarten Koornneef
New Arabidopsis Recombinant Inbred Line Populations Genotyped Using SNPWave and Their Use for Mapping Flowering-Time Quantitative Trait Loci
Genetics 2006; 172(3): 1867-1876 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Pär K. Ingvarsson, M. Victoria García, David Hall, Virginia Luquez, and Stefan Jansson
Clinal Variation in phyB2, a Candidate Gene for Day-Length-Induced Growth Cessation and Bud Set, Across a Latitudinal Gradient in European Aspen (Populus tremula)
Genetics 2006; 172(3): 1845-1853 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Richard D. McCulloch and Mark D. Baker
Analysis of One-Sided Marker Segregation Patterns Resulting From Mammalian Gene Targeting
Genetics 2006; 172(3): 1767-1781 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Hiroshi Akashi, Wen-Ya Ko, Shengfu Piao, Anoop John, Piyush Goel, Chiao-Feng Lin, and Alexa P. Vitins
Molecular Evolution in the Drosophila melanogaster Species Subgroup: Frequent Parameter Fluctuations on the Timescale of Molecular Divergence
Genetics 2006; 172(3): 1711-1726 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

David J. Begun, Heather A. Lindfors, Melissa E. Thompson, and Alisha K. Holloway
Recently Evolved Genes Identified From Drosophila yakuba and D. erecta Accessory Gland Expressed Sequence Tags
Genetics 2006; 172(3): 1675-1681 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data] [Corrigendum]

Kevin Thornton and Peter Andolfatto
Approximate Bayesian Inference Reveals Evidence for a Recent, Severe Bottleneck in a Netherlands Population of Drosophila melanogaster
Genetics 2006; 172(3): 1607-1619 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Cristina E. Popescu, Tudor Borza, Joseph P. Bielawski, and Robert W. Lee
Evolutionary Rates and Expression Level in Chlamydomonas
Genetics 2006; 172(3): 1567-1576 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Severine Mayrhofer, Jan M. Weber, and Stefanie Pöggeler
Pheromones and Pheromone Receptors Are Required for Proper Sexual Development in the Homothallic Ascomycete Sordaria macrospora
Genetics 2006; 172(3): 1521-1533 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Meenal Vyas, C. Ravindran, and Durgadas P. Kasbekar
Chromosome Segment Duplications in Neurospora crassa and Their Effects on Repeat-Induced Point Mutation and Meiotic Silencing by Unpaired DNA
Genetics 2006; 172(3): 1511-1519 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Houjian Cai, Sarah Kauffman, Fred Naider, and Jeffrey M. Becker
Genomewide Screen Reveals a Wide Regulatory Network for Di/Tripeptide Utilization in Saccharomyces cerevisiae
Genetics 2006; 172(3): 1459-1476 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Teruaki Watabe, Hirohisa Kishino, Yoshiyasu Okuhara, and Yasuhiro Kitazoe
Fold Recognition of the Human Immunodeficiency Virus Type 1 V3 Loop and Flexibility of Its Crown Structure During the Course of Adaptation to a Host
Genetics 2006; 172(3): 1385-1396 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Steven T. Kalinowski, Mark L. Taper, and Anneke M. Metz
How Are Humans Related to Other Primates?: A Guided Inquiry Laboratory for Undergraduate Students
Genetics 2006; 172(3): 1379-1383 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Seungho Cho, David F. Garvin, and Gary J. Muehlbauer
Transcriptome Analysis and Physical Mapping of Barley Genes in Wheat–Barley Chromosome Addition Lines
Genetics 2006; 172(2): 1277-1285 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Robert M. Stupar, Karen A. Beaubien, Weiwei Jin, Junqi Song, Mi-Kyung Lee, Chengcang Wu, Hong-Bin Zhang, Bin Han, and Jiming Jiang
Structural Diversity and Differential Transcription of the Patatin Multicopy Gene Family During Potato Tuber Development
Genetics 2006; 172(2): 1263-1275 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Zhennan Xu and Hugo K. Dooner
The Maize aberrant pollen transmission 1 Gene Is a SABRE/KIP Homolog Required for Pollen Tube Growth
Genetics 2006; 172(2): 1251-1261 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Nathanael R. Hauck, Hisayo Yamane, Ryutaro Tao, and Amy F. Iezzoni
Accumulation of Nonfunctional S-Haplotypes Results in the Breakdown of Gametophytic Self-Incompatibility in Tetraploid Prunus
Genetics 2006; 172(2): 1191-1198 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Daniel J. Kliebenstein, Marilyn A. L. West, Hans van Leeuwen, Kyunga Kim, R. W. Doerge, Richard W. Michelmore, and Dina A. St. Clair
Genomic Survey of Gene Expression Diversity in Arabidopsis thaliana
Genetics 2006; 172(2): 1179-1189 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Flavio Breseghello and Mark E. Sorrells
Association Mapping of Kernel Size and Milling Quality in Wheat (Triticum aestivum L.) Cultivars
Genetics 2006; 172(2): 1165-1177 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

John E. Pool, Vanessa Bauer DuMont, Jacob L. Mueller, and Charles F. Aquadro
A Scan of Molecular Variation Leads to the Narrow Localization of a Selective Sweep Affecting Both Afrotropical and Cosmopolitan Populations of Drosophila melanogaster
Genetics 2006; 172(2): 1093-1105 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Laurence Loewe, Brian Charlesworth, Carolina Bartolomé, and Véronique Nöel
Estimating Selection on Nonsynonymous Mutations
Genetics 2006; 172(2): 1079-1092 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Anan Ragab, Elizabeth C. Thompson, and Andrew A. Travers
High Mobility Group Proteins HMGD and HMGZ Interact Genetically With the Brahma Chromatin Remodeling Complex in Drosophila
Genetics 2006; 172(2): 1069-1078 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Neville Cobbe, Ellada Savvidou, and Margarete M. S. Heck
Diverse Mitotic and Interphase Functions of Condensins in Drosophila
Genetics 2006; 172(2): 991-1008 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Nicole K. Charlie, Michael A. Schade, Angela M. Thomure, and Kenneth G. Miller
Presynaptic UNC-31 (CAPS) Is Required to Activate the G{alpha}s Pathway of the Caenorhabditis elegans Synaptic Signaling Network
Genetics 2006; 172(2): 943-961 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Michael A. Chesney, Ambrose R. Kidd III, and Judith Kimble
gon-14 Functions With Class B and Class C Synthetic Multivulva Genes to Control Larval Growth in Caenorhabditis elegans
Genetics 2006; 172(2): 915-928 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Yi Liu, Prayook Srivilai, Sabine Loos, Markus Aebi, and Ursula Kües
An Essential Gene for Fruiting Body Initiation in the Basidiomycete Coprinopsis cinerea Is Homologous to Bacterial Cyclopropane Fatty Acid Synthase Genes
Genetics 2006; 172(2): 873-884 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Paul F. Cliften, Robert S. Fulton, Richard K. Wilson, and Mark Johnston
After the Duplication: Gene Loss and Adaptation in Saccharomyces Genomes
Genetics 2006; 172(2): 863-872 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Boris Wilson, Hediye Erdjument-Bromage, Paul Tempst, and Bradley R. Cairns
The RSC Chromatin Remodeling Complex Bears an Essential Fungal-Specific Protein Module With Broad Functional Roles
Genetics 2006; 172(2): 795-809 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Benoît De Hertogh, Frédéric Hancy, André Goffeau, and Philippe V. Baret
Emergence of Species-Specific Transporters During Evolution of the Hemiascomycete Phylum
Genetics 2006; 172(2): 771-781 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Camilla L. Nesbø, Marlena Dlutek, and W. Ford Doolittle
Recombination in Thermotoga: Implications for Species Concepts and Biogeography
Genetics 2006; 172(2): 759-769 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Honghua Hu, Ruiting Lan, and Peter R. Reeves
Adaptation of Multilocus Sequencing for Studying Variation Within a Major Clone: Evolutionary Relationships of Salmonella enterica Serovar Typhimurium
Genetics 2006; 172(2): 743-750 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Jonas Binladen, Carsten Wiuf, M. Thomas P. Gilbert, Michael Bunce, Ross Barnett, Greger Larson, Alex D. Greenwood, James Haile, Simon Y. W. Ho, Anders J. Hansen, and Eske Willerslev
Assessing the Fidelity of Ancient DNA Sequences Amplified From Nuclear Genes
Genetics 2006; 172(2): 733-741 [Abstract] [Full Text]  
Article supplement(s): [Supplemental Data]

Kristin J. Simons, John P. Fellers, Harold N. Trick, Zengcui Zhang, Yin-Shan Tai, Bikram S. Gill, and Justin D. Faris
Molecular Characterization of the Major Wheat Domestication Gene Q
Genetics 2006; 172(1): 547-555 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Kirsten Bomblies and John F. Doebley
Pleiotropic Effects of the Duplicate Maize FLORICAULA/LEAFY Genes zfl1 and zfl2 on Traits Under Selection During Maize Domestication
Genetics 2006; 172(1): 519-531 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Jianlin Wang, Lu Tian, Hyeon-Se Lee, Ning E. Wei, Hongmei Jiang, Brian Watson, Andreas Madlung, Thomas C. Osborn, R. W. Doerge, Luca Comai, and Z. Jeffrey Chen
Genomewide Nonadditive Gene Regulation in Arabidopsis Allotetraploids
Genetics 2006; 172(1): 507-517 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Jonathan N. Fitz Gerald, Melissa D. Lehti-Shiu, Paul A. Ingram, Karen I. Deak, Theresa Biesiada, and Jocelyn E. Malamy
Identification of Quantitative Trait Loci That Regulate Arabidopsis Root System Size and Plasticity
Genetics 2006; 172(1): 485-498 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Timothy A. Bell, Elena de la Casa-Esperón, Heather E. Doherty, Folami Ideraabdullah, Kuikwon Kim, Yunfei Wang, Leslie A. Lange, Kirk Wilhemsen, Ethan M. Lange, Carmen Sapienza, and Fernando Pardo-Manuel de Villena
The Paternal Gene of the DDK Syndrome Maps to the Schlafen Gene Cluster on Mouse Chromosome 11
Genetics 2006; 172(1): 411-423 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Marianna R. Bevova, Yurii S. Aulchenko, Soner Aksu, Ulla Renne, and Gudrun A. Brockmann
Chromosome-Wise Dissection of the Genome of the Extremely Big Mouse Line DU6i
Genetics 2006; 172(1): 401-410 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Toomas Kivisild, Peidong Shen, Dennis P. Wall, Bao Do, Raphael Sung, Karen Davis, Giuseppe Passarino, Peter A. Underhill, Curt Scharfe, Antonio Torroni, Rosaria Scozzari, David Modiano, Alfredo Coppa, Peter de Knijff, Marcus Feldman, Luca L. Cavalli-Sforza, and Peter J. Oefner
The Role of Selection in the Evolution of Human Mitochondrial Genomes
Genetics 2006; 172(1): 373-387 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

James H. Thomas
Analysis of Homologous Gene Clusters in Caenorhabditis elegans Reveals Striking Regional Cluster Domains
Genetics 2006; 172(1): 127-143 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Jewel A. Daniel, Brice E. Keyes, Yvonne P. Y. Ng, C. Onyi Freeman, and Daniel J. Burke
Diverse Functions of Spindle Assembly Checkpoint Genes in Saccharomyces cerevisiae
Genetics 2006; 172(1): 53-65 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

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