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for author "Sun-Wei Guo"

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  • Estimating Relatedness in the Presence of Null Alleles
    Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo, Baoguo Li
    Genetics January 2016 202: 247-260; https://doi.org/10.1534/genetics.114.163956
  • Estimating Relatedness in the Presence of Null Alleles
    Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo, Baoguo Li
    Genetics Jan 2016, 202 (1) 247-260; DOI: 10.1534/genetics.114.163956
    Figure 1
    Figure 1
    By Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo and Baoguo Li
    Modes of identity-by-descent between two diploids. In each plot, the two top circles represent the two alleles in one individual, whereas the bottom circles represent the alleles in the second individual. The lines indicate alleles that are identical-by-descent.
  • Estimating Relatedness in the Presence of Null Alleles
    Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo, Baoguo Li
    Genetics Jan 2016, 202 (1) 247-260; DOI: 10.1534/genetics.114.163956
    View table
    Table 1
    By Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo and Baoguo Li
    Probability of patterns of identity-in-state given modes of identity-by-descent in the presence of null alleles
  • Estimating Relatedness in the Presence of Null Alleles
    Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo, Baoguo Li
    Genetics Jan 2016, 202 (1) 247-260; DOI: 10.1534/genetics.114.163956
    Figure 2
    Figure 2
    By Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo and Baoguo Li
    Bias of Formula before correction as a function of the number of visible alleles at loci with triangular distributed allele frequency. The data that have null alleles with a frequency of 0.1, 0.3, 0.5, or 0.6 are shown in the first to fourth columns. The six estimators compared are as follows: Lynch and Ritland (1999) (L&R), novel estimator A (NA), Wang (2002) (WA), Thomas (2010) (TH), novel estimator B (NB), and the Anderson and Weir (2007) estimator (A&W). Results were obtained from 6 million pairs for four relationships by Monte Carlo simulations except the A&W estimator, including parent–offspring (“—”), full sibs (“– –”), half sibs (“–⋅”), and nonrelatives (“⋯”).
  • Estimating Relatedness in the Presence of Null Alleles
    Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo, Baoguo Li
    Genetics Jan 2016, 202 (1) 247-260; DOI: 10.1534/genetics.114.163956
    Figure 3
    Figure 3
    By Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo and Baoguo Li
    Bias of Formula after correction as a function of the number of alleles at loci with a triangular allele frequency distribution. Four levels of null allele frequency are shown in each column. Six estimators are compared, as shown in Figure 2. Results were obtained from 60 million pairs for four relationships by Monte Carlo simulations except the A&W estimator, including parent-offspring (“—”), full-sibs (“––”), half-sibs (“–⋅”) and nonrelatives (“⋯”).
  • Estimating Relatedness in the Presence of Null Alleles
    Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo, Baoguo Li
    Genetics Jan 2016, 202 (1) 247-260; DOI: 10.1534/genetics.114.163956
    Figure 4
    Figure 4
    By Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo and Baoguo Li
    The minimum number of loci by using multiple loci to reach Formula for the four relationships shown in Figure 2. The six estimators are the same as in Figure 1. For each estimator, four frequencies of null alleles were simulated: 0.1 (—), 0.3 (– –), 0.5 (–⋅–), 0.6 (⋯), and 0.7 (Formula), and the observed allele frequency follows the triangular distribution. Results were obtained from 1 million Monte Carlo simulations.
  • Estimating Relatedness in the Presence of Null Alleles
    Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo, Baoguo Li
    Genetics Jan 2016, 202 (1) 247-260; DOI: 10.1534/genetics.114.163956
    Figure 5
    Figure 5
    By Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo and Baoguo Li
    The bias and MSE of Formula estimated from 20 loci with a triangular allele frequency distribution. Ten million dyads were simulated, with nonrelatives, half sibs, full sibs, and parent–offspring contributing to 70%, 10%, 10%, and 10% of dyads, respectively. The frequency of null alleles was simulated at four levels (Formula, 0.3, 0.5, and 0.6), with each row showing a single level. The results of six estimators are compared: L&R (—), NA (– –), WA (∇), TH (Δ), NA (∘), and A&W (×).
  • Estimating Relatedness in the Presence of Null Alleles
    Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo, Baoguo Li
    Genetics Jan 2016, 202 (1) 247-260; DOI: 10.1534/genetics.114.163956
    View table
    Table 2
    By Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo and Baoguo Li
    Statistics of Formula in a finite population
  • Estimating Relatedness in the Presence of Null Alleles
    Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo, Baoguo Li
    Genetics Jan 2016, 202 (1) 247-260; DOI: 10.1534/genetics.114.163956
    View table
    Table 3
    By Kang Huang, Kermit Ritland, Derek W. Dunn, Xiaoguang Qi, Songtao Guo and Baoguo Li
    The distribution of genotypes between parents (Formula) and offspring (Formula) with the presence of null alleles, assuming there are three uniformly distributed alleles and one of them is a null allele
  • Genetic Dissection of Internode Length Above the Uppermost Ear in Four RIL Populations of Maize (Zea mays L.)
    Lixia Ku, Liru Cao, Xiaomin Wei, Huihui Su, Zhiqiang Tian, Shulei Guo, Liangkun Zhang, Zhenzhen Ren, Xiaobo Wang, Yuguang Zhu, Guohui Li, Zhiyong Wang, Yanhui Chen
    G3: Genes|Genomes|Genetics February 2015 5: 281-289; https://doi.org/10.1534/g3.114.016378

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