Table 2 D. melanogaster assembly assessment
AssembliesGenome fraction (%)aDuplication ratioaMapped (%)bProperly paired (%)Coverage > 10× (%)bNo. of misassembliesaMismatches per 100 kbaIndel per 100 kba
GCF_000001215.4 (R6)NANA97.8994.1898.82NANANA
Chakraborty et al.c93.9451.07897.4393.6999.37104861.6136.93
GCA_002050065.1d91.6231.04095.5891.8199.97138278.0823.99
GCA_000778455.1d96.5731.15397.7194.5799.393508171.3038.52
This study97.0051.08297.9094.7399.622408110.6117.54
  • a Relative to R6.

  • b Including reads from both Pacbio and Illumina.

  • c Chakraborty et al. (2016).

  • d Berlin et al. (2015).