Table 1 Analysis of single nucleotide polymorphisms between A and AY2 males
ChromosomeBase pairsTotal number of variantsBiallelic SNPs without missing dataDifferentially fixed SNPs
Number%
X24,393,1081,040,639583,061270.0046
2L49,364,3252,180,4631,464,616420.0029
2R61,545,1052,233,9411,573,367120.0008
3L41,963,4351,702,5741,159,627270.0023
3R53,200,6842,480,2541,653,36760.0004
Mt15,363232100
Unknown42,389,979749,098351,8701150.0327
Y_unplaced237,0454,1801,90267735.5941