Table 4 Regions of homozygosity shared by six Fonni’s Dogs, as identified from SNP-chip analysis
Region of homozygosityLength (bp)Personal variantsaVariant impactbGene affected
chr6:2,942,512-2,998,88556,373None
chr7:551,194-675,969124,775None
chr7:733,453-914,233180,780chr7:742,610ModifierLGR6
chr7:928,930-988,93460,004chr7:955,472ModifierELF3
chr7:1,027,580-1,298,049207,469chr7:1,179,044ModifierNAV1
chr7:1,190,728ModifierNAV1
chr7:1,221,667ModifierNAV1
chr8:1,069,127-1,108,69439,567None
chr13:991,157-1,022,65431,497None
chr13:1,115,146-1,156,52941,383chr13:1,131,868ModifierVPS13B
chr13:1,157,079ModifierVPS13B
chr13:1,272,226-1,291,57419,348chr13:1,290,464ModifierVPS13B
chr13:1,571,048-1,655,07384,025chr13:1,572305ModifierVPS13B
chr22:2,578,384-2,618,43740,053chr13:2,584,594ModifierFNDC3A
  • Chr, chromosome.

  • a Individual variants from Fonni’s Dog WGS that are within the homozygous regions.

  • b Variant impact and affected genes annotated from CanFam3.1.76.