Table 2 Results of imputation in rice 8-way MAGIC
ChrM%F0%F%MISSG0GD0D
1499322.693.139.15.81.40.150.037
2405428.193.338.53.20.90.130.038
3259230.797.236.95.21.20.180.058
4454723.591.639.47.31.80.130.034
5225727.994.236.56.01.90.190.056
6229427.295.137.67.51.30.200.057
7275627.896.638.44.21.70.150.045
8246621.094.038.17.21.80.220.049
9202926.390.336.15.22.00.170.049
10235923.791.337.22.91.00.170.043
11335623.092.338.82.70.80.150.037
12353723.885.937.04.21.70.130.036
All3724025.292.7
  • Physical map positions were converted to centimorgans using a conversion factor of 1 cM/250 kb. For each chromosome, we report the number of markers postprocessing (M) to be imputed; the proportion of markers with complete founder genotypes initially (%F0); the proportion of markers with complete founder genotypes postimputation (%F); the percentage of missing data among the progeny (%MISS); the maximum gap between markers with complete founder genotypes in centimorgans before and after imputation (G0/G); and the mean distance between markers with complete founder genotypes before and after imputation in centimorgans (D0/D).