Table 1 Simulation results averaged across 1000 replicates of eight-parent MAGIC populations
MN%MISS%F0%F%FC%FK%K%B%M
1012003046.910010086.679.893.796.3
1012004024.510010085.478.893.095.5
101200509.810099.683.977.592.094.8
101200603.599.998.381.675.788.793.2
1014003047.310010088.480.394.396.3
1014004024.910010087.479.493.895.5
1014005010.110010086.278.292.694.8
101400603.610099.784.376.790.793.5
2012003047.110010090.783.596.798.3
2012004024.810010089.582.396.398.0
2012005010.010010087.880.895.497.6
201200602.910099.785.278.891.296.8
2014003047.110010092.184.197.098.3
2014004024.910010091.383.196.598.0
2014005010.010010090.181.896.097.6
201400602.810010088.280.094.396.8
  • For each scenario we record the percent of markers with complete founder genotypes originally (%F0), the percentage complete after imputation (%F), the percentage of missing founder genotypes correctly imputed (%FC), the percentage correctly imputed based on the five nearest neighbor markers (%FK), the percentage of missing progeny genotypes correctly imputed based on the five nearest neighbor markers (%K), the percentage correctly imputed with BEAGLE (%B), and the percentage correctly imputed with R/mpMap (%M).