TABLE 4

Imputation error rates of 47 inbred strains genotyped only in WTCHG SNPs, using Mouse HapMap SNPs, and gap-filling Perlegen SNPs

Genotype confidence
SNP qualityHigh confidence (%)Medium confidence (%)Low confidence (%)Total (%)
36 classical inbred strains0.35 (88.9)9.63 (6.74)29.7 (4.37)2.25 (100)
All 47 strains0.37 (71.7)8.85 (16.7)27.0 (11.5)4.86 (100)
  • The percentage of imputed genotypes in each category is shown within parentheses.