TABLE 2

Mean absolute difference between true segregation indicators and probabilities of descent of high-density SNP alleles for equally spaced low-density (LD) SNPs, depending on the spacing of LD-SNPs, the generation after training, and the number of simulated QTL (25 replicates)

No. of simulated QTLLD-SNP spacing (cM)Generation
234
100100.1460.1510.153
500100.1460.1520.157
1000100.1450.1520.156
500200.2490.2650.272
  • SE < 0.002.