TABLE 2

Locus name, description, and chromosome location for the 24 loci tested for association with rAUDPC, PM, and MCR

LocusLocus descriptionaChr. no.
StPAD4-1Defense signaling gene homologous to Arabidopsis PAD4 (Pajerowska et al. 2005), linked to late blight QRL Pin2AII
GP321Sequence tagged site (STS) linked to late blight QRL Pin2B (Oberhagemann et al. 1999; Sliwka et al. 2007)II
Stp23Gene encoding L-type starch phosphorylase, linked to resistance “hot spot” including late blight QRL Pin3AIII
StSGT1-1Defense signaling gene homologous to Arabidopsis SGT1-1 (Pajerowska et al. 2005), linked to late blight QRL Pin3BIII
S1b3/RBOExpressed sequence tag (EST) encoding a candidate gene (defense response, strong homology to respiratory burst oxidase (Gebhardt et al. 2003), linked to late blight QRL Pin3CIII
St4clDefense response gene encoding 4-coumarate: CoA ligase, linked to late blight QRL Pin3CIII
BA106c14t7End of a BAC insertion containing a member of the Gro1 resistance gene family (Paal et al. 2004), linked to a resistance hot spot including late blight QRL Pin4AIV
StAOS1Defense signaling gene homologous to Arabidopsis AOS (Pajerowska et al. 2005)IV
P4h6EST encoding a gene with nucleotide binding (NB) and leucine-rich repeat (LRR) domains linked to a resistance hot spot including late blight QRL Pin5AV
BA213c14t7End of a BAC insertion containing the R1 resistance gene (Ballvora et al. 2002, 2007) linked to a resistance hot spot including late blight QRL Pin5AV
R1R1 gene conferring hypersensitive resistance to late blight (Ballvora et al. 2002)V
239E4leftSTS marker linked to the H1 nematode resistance gene (Bakker et al. 2004) and late blight QRL PinVBV
StSGT1-2Defense signaling gene homologous to Arabidopsis SGT1-2 (Pajerowska et al. 2005), linked to a resistance hot spot including late blight QRL PinVIAVI
StEDS1Defense signaling gene homologous to Arabidopsis EDS1 (Pajerowska et al. 2005)VI
BA228g19t7End of a BAC insertion containing resistance gene-like sequences (Rickert et al. 2003)VII
BA229c2t3End of a BAC insertion physically linked to the Gro1 resistance gene familyVII
BA73e8t3End of a BAC insertion containing resistance gene-like sequences (Rickert et al. 2003)VIII
CP105EST marker linked to the Rber (Ewing et al. 2000) gene for resistance to late blightX
BA81l15t3End of a BAC insertion containing resistance gene-like sequences (Rickert et al. 2003)X
StAOS2Defense signaling gene, functional homolog of Arabidopsis AOS (Pajerowska et al. 2005; Pajerowska-Mukhtar et al. 2008) linked to a resistance hot spot including late blight QRL Pin11BXI
R3aR3a gene conferring hypersensitive resistance to late blight (Huang et al. 2005) linked to a resistance hot spot including late blight QRL Pin11BXI
R3bMember of the R3 resistance gene family (Huang 2005), linked to a resistance hot spot including late blight QRL Pin11BXI
OSM8eDefense response gene, osmotin like (Castillo Ruiz et al. 2005)XI
GP122STS marker linked to the Ry-fsto resistance gene (Flis et al. 2005)XII