TABLE 1

Some of the putative 38 full copies of Chunjie (detailed information of all 38 full copies is in supplemental Table S1)

NameLengthTIRDRAT(DR)AT(F)ATI(TIR)I(DR)MFEAvgMFEOverlap
Chunjie-12352190.780.650.471.001.00129.90.55
Chunjie-92192190.670.470.471.001.00−126.96−0.58
Chunjie-122192190.780.640.471.001.00−126.96−0.58148264141
Chunjie-142192190.330.530.471.001.00−126.96−0.58
Chunjie-152192190.560.680.481.001.00−125.86−0.57148265944
Chunjie-162192190.330.480.471.001.00−126.96−0.58
Chunjie-311872190.390.500.470.950.89−97.5−0.52
Chunjie-322162190.440.660.480.811.00−110.81−0.51
Chunjie-351792190.780.660.450.861.00−110.6−0.62148264620
  • AT(F) is the A + T content of the two 50-bp regions flanking the DRs and one DR. AT(DR) and AT are the A + T content of the DRs and the MITE itself. Ident(TIR) and Ident(DR) are the percentages of reversely complementary and identical nucleotides, respectively. MFE and AvgMFE are the minimum folding energy and the MFE divided by the length of the element. Overlap lists the genes' overlap with this element. Underlined numbers are discussed in the text.