TABLE 3

Haplotype organization for the six genes under survey

Sh2Bt2SssIAe1WxO2:
Frequency (%)HFrequency (%)HFrequency (%)HFrequency (%)HFrequency (%)HFrequency (%)
HS1S2S1S2S1S2S1S2S1S2
H171.9aa63.6aa82.6aa24.0aa27.9aa20.5
H29.2ba7.1ba1.2ba8.4ab0.8ab24.0
H37.2ab14.1bb7.8cb15.6bb7.8ac17.1
H41.3ca1.1ab5.4db5.2bc1.6ad1.4
H52.6da0.5db1.8cc1.3bd2.3ae1.4
H67.8dc0.5da1.2ed1.9ce1.6be3.4
H73.3ca20.8cd4.7ba1.4
H80.5ec0.6cc0.8cc1.4
H95.4fc14.9dc0.8ca1.4
H102.7gd0.6db3.9cd6.8
H110.5ga0.6ec0.8cf3.4
H120.5fa5.8ff0.8bg2.1
H130.8bh2.7
H1422.5bf0.7
H150.8ci1.4
H160.8bi1.4
H170.8ai2.1
H180.8aj2.1
H197.8ak0.7
H2010.9af2.1
H210.8ag2.7
H220.8ah
  • There are two separate segments per genes (S1 and S2) except for O2 (7 concatenated segments). The haplotypes observed for each segment were named alphabetically (a--k), as shown in supplemental Tables S3, S5, S7, S9 and S11.