TABLE 1

Consensus genetic map of the five RIL populations

Genetic position (cM)
MarkerTypePhysical position (Mb)BlhColBurColCtColCviColShaCol
c1_005930.60.00.00.0 (−)0.0 (−)0.0
c1_022122.25.4 (+)7.35.8 (−)4.5
c1_029923.08.16.3 (+)10.210.7 (−)7.2
c1_041764.210.78.3 (+)15.417.7 (−)11.7
c1_055935.613.412.4 (+)21.824.4 (−)15.2
c1_083858.425.717.8 (+)31.637.327.9
c1_09621M9.629.2
c1_097829.823.7 (+)36.741.631.9
c1_1116011.228.9 (+)45.048.9
c1_11723M11.739.3
c1_1229512.334.6 (+)48.154.243.2
c1_1386913.950.142.0 (+)55.464.549.1
c1_1392613.964.5
c1_1563415.650.342.2 (+)65.449.4
c1_15927M15.950.5
c1_1687516.955.5 (+)50.8 (+)61.371.751.2
c1_1843318.463.1 (+)62.569.282.059.3
c1_1947819.572.085.661.5 (−)
c1_2038420.469.2 (+)68.073.989.065.7 (−)
c1_2218122.272.9 (+)70.5 (−)92.370.3 (−)
c1_2338123.477.5 (+)74.3 (−)82.997.073.2 (−)
c1_2479524.883.7 (+)81.8 (−)89.3105.979.7 (−)
c1_2569825.788.7 (+)84.6 (−)92.9111.783.1 (−)
c1_2699327.090.3102.2122.6 (−)87.7
c1_2845428.597.0 (+)94.4104.9129.4 (−)91.5
c1_2866728.794.7105.6130.4
c1_2989829.9104.0 (+)99.4112.7137.996.4
c2_005930.60.00.00.00.00.0
c2_023652.411.95.2 (+)7.613.87.2 (+)
c2_030413.07.916.97.7 (+)
c2_042634.312.65.6 (+)17.77.7 (+)
c2_055885.66.6 (+)9.88.3 (+)
c2_06280I6.325.9
c2_066556.717.49.3 (+)15.012.2 (+)
c2_076507.723.313.022.434.619.3 (+)
c2_1025010.333.624.237.944.430.7 (+)
c2_1145711.537.128.542.248.835.1 (+)
c2_1243512.443.633.747.754.741.5 (+)
c2_1347213.547.738.361.645.0 (+)
c2_1525215.352.343.860.968.548.5 (+)
c2_1683716.858.549.765.577.254.4 (+)
c2_1760617.651.266.979.956.7 (+)
c2_1875318.866.755.870.886.761.4 (+)
c3_005800.60.00.0 (+)0.0 (−)
c3_008850.90.00.01.1 (+)0.9 (−)
c3_019011.93.03.74.5 (+)3.8 (−)
c3_02133M2.16.0
c3_029683.06.85.78.3 (+)5.9 (−)
c3_041414.110.48.011.814.6 (+)5.9 (−)
c3_051415.113.811.115.818.7 (+)5.9 (−)
c3_066316.614.519.624.0 (+)9.4 (−)
c3_07673M7.721.9
c3_080428.019.325.930.2 (+)12.9 (−)
c3_09056M9.132.4
c3_097489.728.735.039.9 (+)24.7
c3_1099611.034.248.4 (+)
c3_1119211.249.8 (+)35.5
c3_11208M11.243.0
c3_1264712.646.4 (+)40.948.655.738.7
c3_1409714.146.6 (+)41.248.638.7
c3_1511715.147.7 (+)42.048.957.6
c3_15714M15.741.0
c3_1667716.750.057.3 (−)68.4
c3_17283M17.348.9
c3_17651M17.755.1
c3_1818018.254.263.6 (−)75.651.8
c3_2072920.767.563.470.9 (−)85.963.4 (+)
c3_2214722.170.265.574.290.367.7 (+)
c4_000120.00.00.00.0
c4_00269I0.30.0
c4_006410.60.04.16.37.0
c4_021332.111.36.912.416.215.6
c4_038333.811.57.012.516.415.6
c4_048774.911.77.312.518.915.9
c4_05629M5.613.3
c4_058505.919.220.128.422.2
c4_069236.926.722.628.135.827.7
c4_07549M7.531.325.631.339.330.8
c4_077407.726.431.639.8
c4_089308.938.630.9 (+)36.743.735.5
c4_1060910.635.7 (+)46.051.142.4
c4_1187811.951.638.7 (+)52.256.647.9
c4_1317113.256.1 (+)40.9 (+)56.862.555.1 (−)
c4_1481914.860.944.2 (+)62.668.659.4
c4_1576515.846.4 (+)64.971.960.8
c4_1768417.768.852.7 (+)73.780.9
c4_1805618.168.3
c5_005760.60.00.0 (−)0.0 (−)0.0 (+)0.0
c5_015871.67.04.6 (−)4.55.4 (+)6.4
c5_029002.911.06.1 (−)8.9 (−)12.1 (+)9.0 (−)
c5_040114.015.69.1 (−)13.3 (−)17.9 (+)11.8
c5_053195.319.111.5 (−)17.422.6 (+)17.2
c5_068206.825.518.9 (−)23.928.4 (+)21.7
c5_074427.420.4 (−)27.631.5 (+)24.9
c5_085638.633.325.132.135.2 (+)
c5_09082M9.136.1
c5_1042810.445.733.746.148.141.7
c5_1269912.735.447.4
c5_1361413.649.036.448.253.143.1
c5_1476614.854.842.053.058.3
c5_1636816.460.553.0
c5_1757017.664.453.364.570.0
c5_1931619.373.262.668.877.562.1 (+)
c5_2031820.377.164.271.481.463.6 (+)
c5_2131921.382.868.575.484.966.1 (+)
c5_2241522.485.973.280.391.472.5 (+)
c5_2311623.187.575.482.596.374.7 (+)
c5_2499725.095.180.488.1106.380.9 (+)
c5_2667126.7101.089.698.1 (−)112.687.3 (+)
  • Each marker name includes the chromosome number followed by the physical position in kilobases of the marker on the chromosome (Col-0 genomic sequence). “M” indicates a microsatellite marker; “I” indicates an indel marker. Other markers are SNPs. Markers showing a significant segregation distortion between the parental alleles are indicated by (+) when there is an excess of Col-0 allele and by (−) when there is a lack of Col-0 allele relative to the other parent allele.