TABLE 3

Significant biological function groups of genes in the yeast subnetwork

GO_termFrequency (%)Genome frequency (%)ProbabilityGenes
Catalytic activity41.626.81.50E-07AAD14 AAD6 ACO1 AKL1 ALD6 AMD2 APN2 ARA1 ARD1 ARP5 AYR1 BDS1 CIT2 COQ5 COX5B DCP2 DIA4 DLD3 DUS3 ECM40 ERF2 EXG1 FET3 FET5 FRE2 GAB1 GCV3 GPA1 GRX5 HIS4 HIS5 HMG1 HMG2 HO HOS4 ICL2 ILV6 KCC4 KTR1 KTR6 LAT1 LEU2 LSC1 LYS2 LYS4 MAP1 MCM6 MET22 MKT1 MSH2 MSK1 MTQ2 MTR3 NFS1 NOP2 NUC1 NUG1 OST2 OST6 PDE1 PDR12 PHO8 PHO85 PLB2 PMA2 POL1 PPZ1 RAD16 RAD52 RAS1 RCK2 RFC4 RFC5 RHO2 RIB3 RPE1 RPM2 RPO41 SAP4 SCO1 SEN1 SHR5 SKM1 PAH1/SMP2 SPO11 SSA4 SUR1 THR4 TIP1 TOP2 TPS1 TRM7 TRP3 TYR1 TYS1 UBP14 UBP16 UGA2 URA3 WRS1 YAL061W RXT2 YEL077C YER138C YER160C YNL045W NMA111 YOL155C YPT53 YPT6
Hydrolase activity17.810.50.00026AMD2 APN2 ARP5 BDS1 DCP2 EXG1 GAB1 GPA1 HIS4 HO HOS4 MAP1 MCM6 MET22 MKT1 MSH2 MTR3 NUC1 NUG1 PDE1 PDR12 PHO8 PLB2 PMA2 PPZ1 RAD16 RAS1 RFC4 RFC5 RHO2 RPM2 SAP4 SEN1 PAH1/SMP2 SPO11 SSA4 TIP1 UBP14 UBP16 RXT2 YER138C YER160C YNL045W NMA111 YOL155C YPT53 YPT6
Transporter activity9.05.60.01485AAC1 AGP2 ALR1 AQR1 ATO2 ATR1 COX5B CRC1 DIC1 HXT2 ITR1 KAP114 LPE10 MCH4 MRS11 PDR12 PHO91 PMA2 POR1 SAL1 TAT1 UGA4 YFL054C YMC2
Oxidoreductase activity7.93.50.00066AAD14 AAD6 ALD6 ARA1 AYR1 COX5B DLD3 FET3 FET5 FRE2 GCV3 GRX5 HIS4 HMG1 HMG2 LEU2 LYS2 SCO1 TYR1 UGA2 YAL061W
Pyrophosphatase activity6.83.50.00615ARP5 DCP2 GPA1 HIS4 MCM6 MSH2 NUG1 PDR12 PMA2 RAD16 RAS1 RFC4 RFC5 RHO2 SEN1 SSA4 YPT53 YPT6
Nucleoside- triphosphatase activity6.03.20.01405ARP5 GPA1 MCM6 MSH2 NUG1 PDR12 PMA2 RAD16 RAS1 RFC4 RFC5 RHO2 SEN1 SSA4 YPT53 YPT6
  • Data were obtained from the Saccharomyces genome database at http://www.yeastgenome.org/. Column headings from left to right: GO terms, significant GO terms; Frequency (%), frequency of the terms in genes submitted; Genome frequency (%), frequency of the terms in the whole genome; Probability, a score of significance of the terms in the genes submitted; Genes, genes involved in the biological process.