TABLE 2

Putative identities for a subset of polymorphic cDNA–AFLP fragments

Cloned fragment IDcDNA–AFLP patternaNucleotide similarity to A. thaliana (%)/E-value
TpTmTm′TdPutative protein
TDF7+++Casein kinase88/1.9e-7
TDF12+++Leucine-rich repeat transmembrane protein kinase61/0.02
TDF13++Peroxidase69/8.5e-20
TDF17.4++Polyubiquitin79/1.5e-33
TDF31+++ABC transporter family protein74/9.4e-18
TDF36.3++Thioredoxin M-type 165/1.5e-5
TDF44+Leucine-rich repeat transmembrane protein kinase72/1.8e-30
TDF46+Protein phosphatase 2C family protein84/9.7e-8
TDF47+TATA-box-binding protein-interacting protein73/3.4e-6
TDF53++Expressed protein67/1.1e-14
TDF69.8++Expressed protein69/2.8e-30
TDF72.1++MADS-box protein64/4.3e-12
TDF62++Auxin conjugate hydrolase70/1.7e-30
TDF72.3++Putative adenine–DNA glycosylase65/0.037
TDF74++Transducin family protein64/1.5e-4
TDF75++Putrescine-binding periplasmic protein73/5.8e-11
TDF80.10++Fructose–bisphosphate aldolase77/2.9e-36
TDF85+β-fructosidase69/2.2e-10
TDF90+Small GTP-binding protein77/2.4e-37
TDF97++bZIP transcription factor family protein81/1.3e-7
  • a +, fragment present; −, fragment absent.

  • Tp, T. pratensis, Moscow ID (2608); Tm, T. miscellus, Moscow, ID (2604); Tm′, T. miscellus, Pullman, WA (2605); Td, T. dubius, Pullman, WA (2613).