TABLE 5

Sequence context of sites displaying mutation rates subject to modulation by accessory proteins TA

MutationSiteContext
G → A−68ATTAATGTGAGTT
84CGTCGTGACTGGG
90GACTGGGAAAACC
118TTAATCGCCTTGC
141CCTTTCGCCAGCT
148CAGCTGGCGTAAT
169AGGCCCGCACCGA
G → T88GTGACTGGGAAAA
102CCTGGCGTTACCC
G → C82AACGTCGTGACTG
88GTGACTGGGAAAA
89TGACTGGGAAAAC
−G69GCCGTCGTTTTAC
102CCTGGCGTTACCC
T → C87CGTGACTGGGAAA
183CGCCCTTCCCAAC
T → A−58GTTAGCTCACTCA
87CGTGACTGGGAAA
+T−(29–27)TACACTTTATGCT
98AAACCCTGGCGTT
C → T81CAACGTCGTGACT
106GCGTTACCCAACT
108GTTACCCAACTTA
−C140CCCTTTCGCCAGC
+C132–136ACATCCCCCTTTC
  • The sites are those from Table 4 at which effects were observed at P ≤ 0.1 and include ∼11 sites detected from sampling variation alone and also 5 sites (−68, 87, 89, 118, and 183) detected previously (Bebenek et al. 2002) and confirmed here.