TABLE 3

Synonymous (Ks), silent (Ksilent), and nonsynonymous (Ka) divergence between D. miranda, D. pseudoobscura, and D. affinis, expressed as percentages

D. miranda vs. D. pseudoobscuraD. miranda vs. D. affinisD. pseudoobscura vs. D. affinis
GeneKsKsilentKaKa/KsKsKsilentKaKa/KsKsKsilentKaKa/Ks
bcd4.133.580.140.0322.3221.32 0.910.0420.8919.78 1.020.05
Bruce6.556.350.230.0339.0129.57 0.860.0241.5931.68 0.630.02
ftz6.055.390.960.1620.8319.52 3.510.1719.7518.02 3.360.17
Gld4.164.160.010.0020.9620.96 0.400.0220.0720.07 0.390.02
hb3.773.750.320.0923.8723.74 0.930.0422.9622.83 1.060.05
hyd2.502.370.600.2420.4218.35 0.870.0421.7818.85 0.720.03
ninaE3.733.810.000.0023.2332.53 0.840.0423.7833.81 0.840.04
nop564.113.970.310.0817.1519.14 0.520.0318.8220.20 0.620.03
RpL323.212.150.000.0013.6813.16 0.000.0017.5913.71 0.000.00
rosy6.035.810.520.0928.4027.00 2.190.0830.6628.93 2.220.07
sry-alpha2.752.750.620.2335.6035.6011.230.3234.4634.4610.800.31
Tl6.926.650.420.0626.5325.22 5.940.2224.8924.29 5.740.23
ade35.275.910.830.1622.3427.16 1.180.0525.4929.10 0.680.03
Adh4.493.211.060.2420.3426.41 1.780.0920.0725.94 2.140.11
Adh-dup3.874.760.970.2533.3133.80 2.640.0835.2435.22 2.840.08
amd2.302.830.300.1322.9216.54 1.470.0623.0317.54 1.450.06
Ddc6.016.010.290.0526.9926.99 1.280.0532.3032.30 1.010.03
dpp3.264.451.070.3312.8618.91 2.140.1711.8118.92 1.990.17
Eno2.672.410.010.0012.1211.20 1.080.0912.7712.08 1.070.08
Gpdh3.253.320.000.00 7.8116.09 0.000.0011.4314.98 0.000.00
Lam3.032.400.640.2125.1022.77 3.970.1626.2523.70 4.230.16
smo3.742.800.100.0314.4117.06 0.560.0413.4116.30 0.410.03
Uro6.965.820.310.0425.5023.84 1.230.0526.4125.04 1.230.05
AnnX8.969.550.020.0022.8725.47 0.660.0325.7330.98 0.640.02
Cyp12.1114.4814.04
Est-5B5.784.790.960.1731.8224.20 4.470.1431.3524.17 4.470.14
Gapdh23.223.220.000.0015.0715.07 0.350.0217.0217.02 0.350.02
Hsp834.184.180.000.0017.6017.60 0.160.0116.7716.77 0.160.01
scute2.133.980.260.1223.1813.84 2.080.0924.6316.55 2.220.09
sesB2.443.830.370.15 7.1516.42 0.650.09 7.1115.63 1.020.14
sisA3.913.501.160.3029.7325.0910.560.3631.9727.40 9.330.29
Sod5.601.790.410.0716.55 9.55 1.660.1016.57 9.81 1.240.07
swallow4.643.701.110.2434.6429.59 8.070.2337.2130.18 7.710.21
Average4.364.100.440.1122.3221.76 2.320.0923.2422.43 2.240.09
SE0.2840.2870.0680.017 1.359 1.146 0.4980.0151.4221.241 0.4690.015
  • Silent (Ksilent), synonymous (Ks), and nonsynonymous (Ka) divergence was estimated by the Jukes-Cantor correction for multiple hits. The data shown in this table are not corrected for within-species diversity.