TABLE 1

Estimates for model log-likelihood (log P(X|K)) for 100 diploid individuals taken from a simulated random-mating population (scenario I) with N0 = 2500

KUncorrelated modelF model
A.
1-81404-81404
2-81819
3-82657
4-82470
B.
1-76855-76855
2-77169-76780
3-77059-77099
4-78171
  • In B there is a 50% selfing rate. (—) One of the populations was empty in all of the simulated runs. A total of 400 microsatellites were simulated according to the stepwise mutation model with μ= 2 × 10-4. Each model log-likelihood is the average from two structure runs with 5000 generations burn-in and 50,000 iterations. The prior for F (gamma distribution with mean 0.01 and standard deviation 0.05) puts most of its weight on low values of F. The highest likelihood run in each group is underlined.