TABLE 4

Significance of haplotype tests in Su(H)

Recombination modelK-test on the number of haplotypesaH-test on haplotype diversityaHaplotype testb
Pooled data (n = 20, S = 44, K = 7, H = 0.760)
    No recombinationP = 0.0126P = 0.0170P = 0.0756
    With recombinationcP < 0.0001P = 0.0004P = 0.0062
Inversion (n = 9, S = 31, K = 2, H = 0.346)
    No recombinationP < 0.0001P = 0.0001P = 0.0005
    With recombinationcP < 0.0001P = 0.0001P = 0.0001
Standard (n = 11, S = 39, K = 5, H = 0.645)
    No recombinationP = 0.0199P = 0.0058P = 0.0097
    With recombinationcP = 0.0002P = 0.0001P = 0.0002

K, number of haplotypes; H, sample haplotype diversity calculated as Formula , where pi is the frequency of the ith allele.

  • a Tests based on 10,000 simulations as in Depaulis and Veuille (1998).

  • b As in Hudson et al. (1994).

  • c Recombination rate, Nr = 5.45 × 10–3.