Genetics. Published Articles Ahead of Print: August 24, 2007, Copyright © 2007
doi:10.1534/genetics.107.077487


A more recent version of this article appeared on October 1, 2007.


NOTE

Derivation of the Shrinkage Estimates of Quantitative Trait Locus Effects

1 University of California, Riverside

* To whom correspondence should be addressed. E-mail: xu{at}genetics.ucr.edu.

Submitted on June 12, 2007
Revised on July 17, 2007
Accepted on 3 August 2007


Abstract

The shrinkage estimate of a quantitative trait locus (QTL) effect is the posterior mean of the QTL effect when a normal prior distribution is assigned to the QTL. This note gives the derivation of the shrinkage estimate under the multivariate linear model. An important lemma regarding posterior mean of a normal likelihood combined with a normal prior is introduced. The lemma was then used to derive the Bayesian shrinkage estimates of the QTL effects.

Key Words: Bayes, QTL mapping, Regression coefficient, Shrinkage estimate