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Whole-Genome Scan in Thelytokous-Laying Workers of the Cape Honeybee (Apis mellifera capensis): Central Fusion, Reduced Recombination Rates and Centromere Mapping Using Half-Tetrad Analysis
Emmanuelle Baudry1,a, Per Krygerb, Mike Allsoppc, Nikolaus Koenigerd, Dominique Vautrina, Florence Mougela, Jean-Marie Cornuete, and Michel Solignacaa Laboratoire Populations, Génétique et Evolution, Centre National de la Recherche Scientifique, 91198 Gif-sur-Yvette Cedex, France,
b Division of Insect Ecology, ARC-Plant Protection Research Institute, Rietondale, Pretoria 0001, South Africa,
c ARC-Plant Protection Research Institute, Stellenbosch 7599, South Africa,
d Institut für Bienenkunde, 61440 Oberursel, Germany
e Centre de Biologie et de Gestion des Populations, 34988 Saint-Gely-du-Fesc Cedex, France
Corresponding author: Michel Solignac, Génétique et Evolution, Centre National de la Recherche Scientifique, F 91198 Gif-sur-Yvette Cedex, France., solignac{at}pge.cnrs-gif.fr (E-mail)
Communicating editor: A. NICOLAS
| ABSTRACT |
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While workers of almost all subspecies of honeybee are able to lay only haploid male eggs, Apis mellifera capensis workers are able to produce diploid female eggs by thelytokous parthenogenesis. Cytological analyses have shown that during parthenogenesis, egg diploidy is restored by fusion of the two central meiotic products. This peculiarity of the Cape bee preserves two products of a single meiosis in the daughters and can be used to map centromere positions using half-tetrad analysis. In this study, we use the thelytokous progenies of A. m. capensis workers and a sample of individuals from a naturally occurring A. m. capensis thelytokous clone to map centromere position for most of the linkage groups of the honeybee. We also show that the recombination rate is reduced by >10-fold during the meiosis of A. m. capensis workers. This reduction is restricted to thelytokous parthenogenesis of capensis workers and is not observed in the meiosis of queen within the same subspecies or in arrhenotokous workers of another subspecies. The reduced rate of recombination seems to be associated with negative crossover interference. These results are discussed in relation to evolution of thelytokous parthenogenesis and maintenance of heterozygosity and female sex after thelytoky.
THE honeybee, like other hymenopteran species, is characterized by a haplodiploid system of reproduction. Fertilized oocytes generally produce diploid females (workers and queens) whereas unfertilized eggs produce haploid males (drones) through arrhenotokous parthenogenesis (![]()
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Thelytoky is known to occur at a low frequency in several subspecies of the domestic honeybee (![]()
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The cytological analysis of thelytokous A. m. capensis workers by ![]()
This peculiarity preserves two of the meiotic products (half-tetrad) in the offspring, allowing direct observation of some of the recombination events that occurred in the mother. A pseudo-queen that is heterozygous at a locus will produce daughters that are homozygous at this same locus in half of the cases where a recombination event took place between the locus and the centromere of the chromosome (Fig 1). The number of recombination events between a locus and the centromere depends on their linkage distance. Therefore, the percentage of daughters homozygous at a locus in the progeny of a pseudo-queen should allow the centromere to be placed on a linkage map. Similarly, it is possible to calculate the linkage distance between pairs of markers. Our genetic results (see RESULTS and DISCUSSION) are in agreement with central fusion as described above.
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Our main goal in this study was to use the thelytokous parthenogenesis of the Cape honeybee to position the centromeres of each chromosome onto the linkage map of the honeybee genome (![]()
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In this study, using microsatellite markers, we performed a whole-genome scan on two A. m. capensis samples: first-generation progeny of pseudo-queens reared in experimental hives and individuals from the multiple-generation clone, taken in nature. The two samples are complementary. The first one provides estimates of recombination rates and both, but mainly the second one, allow the observation of gradients of homozygosity along the chromosomal arms. The high number of generations that elapsed since the birth of the clone allowed accumulation of recombination events, a favorable situation that counterbalances the low recombination rates. Results obtained in these two whole-genome scans were used to confirm genetically the occurrence of central fusion during thelytokous parthenogenesis, to map the centromeric regions onto most of the linkage groups of the linkage map, and to compare the recombination rate of the pseudo-queens capensis to that of other honeybee meioses.
| MATERIALS AND METHODS |
|---|
Biological material and DNA extraction:
We used four different kinds of samples in this study, two of them for mapping centromeres and studying the recombination pattern during thelytokous parthenogenesis, the other two as control samples to determine whether recombination rates vary with subspecies (capensis vs. mellifera) or caste (worker vs. queen).
An experimental population of A. m. capensis is maintained in Oberursel (near Frankfurt-am-Mein, Germany). To obtain pseudo-queens, freshly emerged Cape honeybee workers were isolated with a queenless group of young European A. m. carnica workers. A total of 153 female individuals were obtained from these A. m. capensis pseudo-queens. However, preliminary genetic analyses showed offspring admixture was probably caused by apicultural drift (beekeepers' term for the change of hive or colony). Individuals have been reassigned to their respective families on the basis of their microsatellite genotypes. Four progenies composed of 10, 23, 64, and 11 individuals, respectively, were retained for further analyses and comprise the first sample.
Workers from the invasive capensis clone were collected in the field from four regions in South Africa, representing a substantial cross-section of commercial beekeeping activity in the "capensis-infected" region. These samples were collected from different queenless colonies, the worker brood emerging being laid by workers. Only newly emerging bees were collected, to eliminate the possibility of drifting bees. Samples were collected from three laying worker colonies in Richmond, Kwazulu-Natal (colonies 4, 5, and 6), nine from Pretoria (colonies 23, 26, 27, CL, CS, CC, SB, UP, and TdK), two from Alberton (colonies 29 and 30), three from Piet Retief (colonies PR10, 11, and 18), one from Hazyview (colony JW), and one from White River (colony 25). Parasitized hives contained an admixture of A. m. capensis (dark body) and A. m. scutellata (light-color body) workers. The study of a few microsatellite loci confirmed identification of individuals of the Cape bee clone on the basis of body color. Forty-one individuals from 19 parasitized colonies (15 individuals per colony) comprise the second sample.
Two other types of progenies were also analyzed for control purposes. One sample is composed of 33 male eggs produced by an A. m. mellifera worker by arrhenotokous parthenogenesis. The other one consists of 65 drones produced by an A. m. capensis queen, also by arrhenotokous parthenogenesis. Freshly emerged drones were used to avoid apicultural drift.
DNA from the pseudo-queens' progenies was extracted from the head with a phenol-chloroform extraction (![]()
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Microsatellites:
For this study, microsatellites were chosen from those published for the honeybee (![]()
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Data analysis:
Data obtained with the Cape bee parthenogens could in principle allow direct mapping of the centromeres. However, in the pseudo-queen progenies, recombination events were too rare to allow accurate map construction. Furthermore, if in A. m. capensis recombination events can accumulate over numerous generations, they are not independent and cannot be used to calculate linkage distances. Consequently, instead of constructing a map with these data, we have used them to localize the centromeres on the microsatellite linkage map (![]()
The other goal of this study was to compare the recombination rates observed in various meioses. With the pseudo-queen progenies, we have calculated linkage distances between each marker of linkage groups I, II, III, and VIII (the numbers refer to the current state of the linkage map of the bee genome; see ![]()
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We also computed the linkage distances for four pairs of linked markers with the progeny of an A. m. mellifera worker and that of an A. m. capensis queen. For these two progenies, linkage distances were estimated from recombinant fraction r using Haldane's distance function DH = 1/2 ln(1 2r).
| RESULTS |
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Localization of centromeric regions:
The gradient of homozygous recombinants both of first-generation Cape honeybees and from the clone was used to orient the chromosome arms and map the centromeres on the microsatellite map established with queen-laid workers (![]()
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Fig 2 provides three examples of centromere localization. In group I (Fig 2A), homozygosity increases with distance from a central region where five markers present no recombinant at all. This central region is a good candidate for the position of the centromere. Linkage group I is thus likely to be chromosome 1, which is the longest of the complement and the only metacentric one. A second example concerns linkage group II (Fig 2B), which has a very terminal location of the centromere and is probably telocentric. This linkage group is not assigned to a particular chromosome. Finally, gradients on the sex chromosome (Fig 2C), i.e., the chromosome bearing the sex locus, would have been difficult to interpret without the information of the subterminal location of the sex locus (![]()
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Recombination in thelytokous parthenogens:
The linkage distances between markers observed during the thelytokous parthenogenesis of Cape bee pseudo-queens (first sample) have been compared with the distances between the same markers in the linkage map of the honeybee genome (![]()
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To determine if this reduction of recombination could be related to the subspecies (A. m. capensis) or the caste (worker) of the pseudo-queens, the linkage distances observed in two other types of meioses were also contrasted with the distances of the linkage map. Table 2 compares the distances of the linkage map constructed with regular queen meioses with the distances observed during the meiosis of an A. m. capensis queen and an A. m. mellifera worker, for four pairs of linked markers. It has not been possible to use the same panel of loci in both cases due to the different heterozygous loci of the mothers. The linkage distances observed in both cases are very comparable with the map distances [except for the pair of loci (Am0191-Am0097) that presents a significantly smaller recombination rate in the A. m. mellifera worker meiosis]. This suggests that the reduction of recombination rates observed in the capensis pseudo-queen progenies is not associated with the subspecies A. m. capensis or to the meiosis of workers but is particular to thelytokous parthenogens. The excess of double or multiple recombination events suggests the possibility of a negative interference but recombination rates and sample sizes were too small to analyze it.
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| DISCUSSION |
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This formal genetics, established in part on results from a natural laboratory (i.e., the parasitic clone), brings some light to the genetics of the honeybee but also to the more general problem of parthenogens, which until recently have been studied more at the cytological level than at the genetical level.
Central fusion:
The work of ![]()
Centromere mapping:
The number of species where centromeres can be genetically mapped is relatively limited because it is necessary to have access to several products of the same meiosis. The most favorable material is obviously fungi, where tetrads give access to the four meiotic products (![]()
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Assuming central fusion, as justified above, we have used homozygosity gradients to map the centromeric regions on the linkage groups of A. mellifera. Depending on the group, these regions are more or less extended, as a function of the number of recombinant individuals observed (see ![]()
Recombination in the Cape bee:
The analyses on the Cape honeybees by ![]()
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4500 cM (see ![]()
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310 cM for the pseudo-queens. This value is much lower than the one inferred from the cytological distribution of chiasmata. A possible explanation could be that many chiasmata occur very close to the telomeres of chromosomes and hence are rarely detected in our data.
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Even if from these results the exact linkage length of the map of the capensis pseudo-queens cannot be determined, it is clear that there is a strong reduction of recombination during their meiosis. This raises the problem of its origin. ![]()
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Thelytoky and recombination:
Thelytokous parthenogenesis (the production of diploid females from unfertilized eggs) is relatively rare in the animal kingdom with hardly >1500 thelytokous species (![]()
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This reduction, limited to the capensis pseudo-queens, appears as a specific genome-subspecies-caste interaction. It would be interesting to investigate crossover rate in laying workers in other subspecies where thelytoky is observed at low frequency (![]()
Maintenance of heterozygosity:
The reduction of recombination in laying workers is a way to preserve most of the heterozygosity present in the parthenogens. A rate similar to the one observed in the queens would produce in a few generations a progeny that is mostly homozygote (autozygote). Even in a single generation, the reduction of heterozygosity would cause damage because the honeybee is very sensitive to inbreeding for many characters (![]()
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Reduced recombination is probably a compromise between the necessity of chiasmata to ensure a faithful chromosome segregation (aneuploids are produced when crossing over is absent; ![]()
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The sex locus is located on one of the groups we have studied. ![]()
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In spite of the high number of generations elapsed since the origin of the clone, as testified by the observation of mutations at 10 loci, the reduction of heterozygosity by a central fusion process was rather moderate. Considering the 161 loci analyzed, which were heterozygous in the foundress, the average reduction of heterozygosity per individual is only 19.1% (including 7 loci that were homozygous in all individuals for two alternate alleles and the few mutations being taken into account).
Several researchers took advantage of the thelytokous pseudo-queens in the Cape bee to study the heritability or the phenotypic variance of quantitative traits (![]()
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| FOOTNOTES |
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1 Present address: Evolution et Systématique Végétales, Université Paris Sud, 91405 Orsay, France. ![]()
| ACKNOWLEDGMENTS |
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We thank several students for their help for genotyping during this work. We are very grateful to anonymous referees for their helpful comments and suggestions on the manuscript. Funding was provided by the Groupement de Recherches pour l'étude des Génomes and the Action Coordonnée Concertée (Sciences de la vie 1).
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