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Two Lessons From the Interface of Genetics and Medicine
Anthony C. Allisonaa SurroMed, Menlo Park, California 94025
Corresponding author: Anthony C. Allison, 1430 O'Brien Dr., Menlo Park, CA 94025., aallison{at}surromed.com (E-mail)
Thoughts are but dreams till their effects be tried.
WILLIAM SHAKESPEARE, The Rape of LucreceWHILE growing up in Kenya, I became interested in natural history, anthropology, and medicine. Natural history included Darwinism, and at Oxford University after World War II, I learned what was then a novel concept: that natural selection results from changes in gene frequencies in populations. The theoretical basis of population genetics and of the effects of selection had been provided by R. A. Fisher and J. B. S. Haldane in England and by Sewall Wright in the United States. My parallel interest was the diversity of indigenous peoples in East Africa, who belong to several linguistic and cultural groups. An attack of malaria forcibly directed my attention toward parasitic diseases and the need for doing something to relieve tropical maladies. The wish to participate in such a worthwhile task provided motivation for a career in medical research. These rather diverse interests coincided to produce my first major scientific contribution, which was published in 1954, 50 years ago.
| THE DISCOVERY THAT SICKLE-CELL HETEROZYGOTES ARE RESISTANT TO MALARIA |
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James Herrick, a Chicago physician, observed sickle cells in the peripheral blood of an anemic dental student (![]()
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The modern phase of research on sickle-cell disease began in 1949. Linus Pauling recalled how in 1945 he heard from W. B. Castle, a Harvard physician, about sickle cells and the need for deoxygenation to produce them. "It immediately occurred to me that sickle-cell anemia must be a disease of the hemoglobin molecule... the molecules line up to form long thin strands ... which would cause the cell to be deformed into the shape of a sickle or crescent" (![]()
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I entered the scene in mid-1949. By then I had completed basic science studies and had an interval of several months before starting clinical training in the medical school at Oxford. On an expedition from the university to Kenya, my role was to investigate blood groups and other inherited characteristics in East African tribes. One of the genetic markers studied was the sickle-cell trait. It was known that
8% of African Americans carry this condition (![]()
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Such a distribution raised an interesting question. In populations with AS frequencies of 2030%, SS frequencies of 1>2% would be predicted. In keeping with this expectation, I was shown many cases of sickle-cell disease in pediatric wards of hospitals in Kisumu (near Lake Victoria) and Mombasa (on the Kenyan coast), in contrast to very few in Nairobi (central Kenya). Under rural African conditions, survival of SS homozygotes to reproductive age was exceptional, so that selection against this genotype must have been strong. For the lost genes to be replaced by mutation, the mutation rate would have to be unprecedented and confined to certain populations. Why, then, had the gene become common in some parts of Kenya but not others?
Faced with these facts at the end of the 1949 expedition, I had my own flash of inspiration. A common environmental factor in the regions near Lake Victoria and the coast is intense transmission of the malaria parasite Plasmodium falciparum, which in one phase of its life cycle multiplies within red blood cells. Sickle-cell heterozygotes might be relatively resistant to this type of malaria, so that their chances of surviving repeated attacks in early childhood would be increased. By this mechanism, the fitness of AS heterozygotes could be greater than that of AA homozygotes, resulting in a stable polymorphism. Testing this exciting hypothesis had to wait until I had completed my medical studies and received training in parasitology.
The opportunity eventually came in 1953, when I spent nearly a year in East Africa working on the project, which must be placed in context. The parasite P. falciparum, which produces the most severe forms of malaria, is transmitted by Anopheles gambiae and related mosquitoes. The vectors flourish in hot, humid environments such as the coastal regions of Kenya and Tanzania, the region around Lake Victoria, and low-altitude tropical forests. The vectors cannot survive in the highlands or arid regions of East Africa. African infants living in hyperendemic areas have few malaria attacks during the first months of life because they receive some shelter from mosquitoes and fetal Hb, and maternal antibodies may provide some protection. Children aged 4 months to 4 years suffer repeated attacks, with severe morbidity and appreciable mortality. Potentially lethal forms of malaria (usually cerebral malaria or severe anemia) nearly always occur in children with high parasitemia (![]()
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In 1953 it was widely held that immunity to parasites resulted from "premunition," which was maintained by persistent infection or by reinfection. Consequently, immunity to malaria would rapidly decline in persons moving from a malarious environment to one where the parasite is not transmitted, e.g., near Lake Victoria to the Kenya highlands. Belief in this theory influenced the first strategy that I used to ascertain whether sickle-cell heterozygotes are relatively resistant to malaria. A laboratory had been established in Nairobi where volunteers were inoculated with P. falciparum to assay the efficacy of antimalarial drugs. Ethical questions related to this procedure are discussed elsewhere (![]()
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My second strategy was to ascertain whether AS children are relatively resistant to naturally transmitted P. falciparum. Bearing in mind the epidemiological considerations summarized above, I selected for study children aged 4 months to 4 years in a rural Ugandan population in which antimalarial drugs were not used at that time (1953). To my delight, I found that high parasite counts were nearly four times as frequent in AA as in AS children (![]()
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If the malaria hypothesis is correct, high sickle-cell frequencies would be confined to areas where malaria was hyperendemic. Another part of the research conducted in 1953 was a survey of nearly 5000 East Africans. A memorable journey took me from the Semiliki Forest of Western Uganda, where 40% of Baamba are AS, past the Tanganyikan (now Tanzanian) shore of Lake Victoria, where 35% are AS, through the highlands of Kenya and Tanganyika, where none are AS, to the coasts of Kenya and Tanganyika, where several tribes have AS frequencies of 20% (![]()
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My third article was a theoretical analysis of the sickle-cell polymorphism (![]()
20%, and a 10% greater fitness of the heterozygotes suffices for a stable polymorphism. Once the sickle-cell mutation becomes established in a malarious area, its frequency can rise rapidly to approach equilibrium.
These three articles certainly aroused interest when they were published and when the observations were presented at the Cold Spring Harbor Symposium on Population Genetics (![]()
My conclusions initially provoked some skepticism because of two publications. ![]()
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During the next few years, investigators in several African countries confirmed my observations in young children. When all the observations were reviewed (![]()
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P. falciparum also multiplies less well in cultures of AS than in AA red blood cells under mildly anoxic conditions (reviewed by ![]()
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| SEPARATE SICKLE-CELL MUTATIONS |
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The next major advance was the demonstration by ![]()
GTG); in consequence, the ß6 Glu in HbA becomes ß6 Val in HbS.
Two mutations found in nontranscribed sequences of DNA adjacent to the ß-globin gene are so close to each other that the likelihood of crossover is very small. The correlations persist through many generations [extended haplotype homozygosity (EHH)], providing a marker for population affinities and movements. Restriction endonuclease digests of the ß-globin gene cluster have shown five distinct patterns associated with the sickle-cell (GAG
GTG) mutation. Four are observed in Africa (the Bantu, Benin, Senegal, and Cameroon types; ![]()
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| OTHER ABNORMAL HEMOGLOBINS AND G6PD DEFICIENCY |
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The frequencies of abnormal hemoglobins in different populations vary greatly, but some are undoubtedly polymorphic. Three of these are ß-thalassemia, with frequencies up to 10% in parts of Italy (![]()
Lys), which attains frequencies up to 55% in Thailand and other Southeast Asian countries (![]()
Lys), which attains frequencies approaching 20% in northern Ghana and Burkina-Faso (![]()
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Deficiencies of erythrocyte glucose-6-phosphate dehydrogenase (G6PD) are polymorphic in malarious regions in African, Mediterranean, and Southeast Asian countries. Severe falciparum malaria is less frequent in G6PD-deficient African children than in those with normal enzymes (![]()
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There is little doubt that malarial selection played a major role in the distribution of all these polymorphisms. An additional question is raised by the presence of polymorphisms for HbS and another Hb mutation in the same population. Double heterozygotes for HbS and ß-thalassemia, and for HbS and HbC, suffer from variant forms of sickle-cell disease, milder than SS but likely to reduce fitness before modern treatment was available. As predicted (![]()
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Where there is no adverse interaction of mutations, as in the case of abnormal hemoglobins and G6PD deficiency, a positive correlation of these variant alleles in populations would be expected and is found (![]()
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| GENERAL IMPLICATIONS FOR POLYMORPHISM |
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My articles published in 1954 showed that disease is an agent of natural selection, and many human polymorphisms are now thought to be influenced by selection through disease. Other polymorphic genes, including those for HLA-Bw53 and a CD40 ligand variant, likewise decrease susceptibility to malaria (![]()
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These findings have implications beyond malaria. DNA sequencing has established that the human genome is highly polymorphic, and the question arises as to how many of these variations are subject to selection. Many are likely to be neutral as far as selection is concerned, as postulated by Sewall Wright and Motoo Kimura, while others are clearly subject to selection.
A framework for detecting the imprint of recent positive selection has been proposed by ![]()
| "SUCCESS HAS MANY PARENTS" (J. F. KENNEDY) |
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There is no more potent allergen than a new idea. The first reaction of colleagues, as ![]()
The "malaria hypothesis" is often attributed to ![]()
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When this speculation was made by Montalenti in 1949, I was doing field work in East Africa, unaware of what was being discussed at congresses in Europe. I independently formulated the malaria hypothesis to explain the distribution of the sickle-cell trait in Kenya. The difference is that I did not abandon the idea, but went on to show that it was correct. Malaria was not mentioned by others (![]()
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| APPLICATION OF HUMAN GENETICS TO DEFINE A THERAPEUTIC TARGET |
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Now we progress to the second lesson. After the discovery of inherited variations in hemoglobins and plasma proteins, seeking polymorphisms in enzymes became fashionable. Eloise Giblett, of the King County Blood Bank, Seattle, was analyzing electrophoretically demonstrable variations in red cell adenosine deaminase (ADA). Two children were found to have no detectable ADA, and both suffered from a combined immunodeficiency affecting T- and B-lymphocytes, but with normal mental development (![]()
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Another inherited defect of purine metabolism is the Lesch-Nyhan syndrome (![]()
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These results showed that a major purine salvage pathway, mediated by HGPRT, is important for the development of the brain, but not for the responses of lymphocytes to antigenic and mitogenic stimulation. Conversely, ADA is essential for the functions of human T- and B-lymphocytes, but not for the brain. Much has been written about the mechanism by which ADA deficiency affects lymphocyte function. A likely explanation is that, in the absence of ADA, adenosine nucleotides accumulate and guanosine nucleotides are relatively depleted (![]()
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As Francis Crick said, "You can ignore Nature when she whispers but not when she shouts." To me, the outcomes of these genetic defects were a revelation: if one wished to produce an immunosuppressive drug, a promising strategy would be to identify an inhibitor of de novo guanosine nucleotide synthesis. The rate-limiting enzyme in this pathway is inosine-5'-monophosphate dehydrogenase (IMPDH). Why would one want to develop another immunosuppressive drug? Cyclosporin A can damage kidneys and induce hypertension, which is not an ideal profile for a drug used in renal transplantation. It was, therefore, worth exploring other strategies. At the time I was a consultant to several major pharmaceutical companies and tried to convince them that inhibiting IMPDH could lead to a useful drug. They were not interested, so the next step was delayed until 1981, when I was invited to become vice-president for research of Syntex, a pharmaceutical company in Palo Alto, California.
In 1982, Elsie Eugui and I initiated a program for comparing the immunosuppressive effects of known inhibitors of IMPDH. We avoided nucleoside analogs, which have to be phosphorylated, can inhibit DNA repair enzymes, and can produce chromosome breaks. We eventually selected mycophenolic acid (MPA), a fermentation product of Penicillium brevicompactum and related species (![]()
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Depleting guanosine triphosphate (GTP) in lymphocytes and monocytes, mediated by MPA, was found to have another beneficial effect (![]()
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The prediction that MPA would have useful immunosuppressive activity was therefore confirmed, and the rest was development. An ester prodrug was shown to increase the bioavailability of MPA following oral administration. The prodrug, mycophenolate mofetil (MMF; CellCept), was found to prevent allograft rejection in several experimental animal models and in human clinical trials. The drug is now used in various combination therapies to prevent the rejection of human kidney, liver, heart, and lung grafts (![]()
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Our genetically defined target, IMPDH, is universally recognized as a good one for the development of immunosuppressive drugs. In pharmaceutical research, as in life, imitation is the sincerest form of flattery, and several companies are exploring IMPDH inhibitors (see ![]()
| ROLE OF GENETICS IN THERAPEUTIC DEVELOPMENT |
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Sequencing the human genome was completed in 2003, the fiftieth anniversary of the discovery of the structure of DNA. Among the celebratory publications was a vision of the future of genomics research, including the identification of therapeutic targets (![]()
Several established therapies can be considered as falling under the broad umbrella of genetics, which covers a lot of biology. Genetic methods are applied to produce recombinant human erythropoietin, insulin, growth hormone, and interferons. However, recognition of the need for replacement therapy came from endocrinology and that for interferons came from virology. Enzyme replacement therapy arose out of clinical biochemistry. The development of antagonists and agonists selective for receptor subtypes now depends on cloning and expression of the target proteins. However, this is an extension of traditional receptor pharmacology. As far as I am aware, the first application of human genetics to define a major therapeutic target and to exploit it to produce a widely used drug was our program on IMPDH and mycophenolate mofetil. The program was initiated in 1982, and CellCept was approved by the Food and Drug Administration in 1995.
Genetic methods have since been used in other ways to identify therapeutic targets. A spectacular success was the development of an inhibitor of the Bcr-Abl tyrosine kinase for treatment of chronic myeloid leukemia (CML; ![]()
95% of patients with CML, Bcr-Abl has been shown to be a leukemogenic oncogene in experimental animals. It functions as a constitutionally activated tyrosine kinase, and this function is required for transformation by Bcr-Abl. A small-molecule inhibitor of Bcr-Abl, tyrosine kinase (imatinib-Gleevec), proved to be an effective therapeutic agent in CML and some other malignancies. Mycophenolate mofetil and imatinib are proof in principle not only for the concept of molecular targeted therapy, but also for the application of genetics to identify molecular targets. Sadly, resistance to Gleevec eventually develops in many patients. Happily, resistance to CellCept rarely, if ever, occurs.
The grand challenge for the future presented by ![]()
| "IF YOU CAN DREAMBUT NOT MAKE DREAMS YOUR MASTER ..." (KIPLING) |
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My first lesson as a research scientist was not to become attached to pet ideas: they are fun to play with but need careful evaluation. An investigator without ideas resembles champagne without bubbles; however, most ideas, like bubbles, are evanescent. The majority of the ideas that survive result in potboilers, which have their place in sustaining the advancement of science. Very few ideas are good enough to result in even a minor paradigm shift or to open up a field of investigation. Seeing that happen to one's own brainchildren is the ultimate thrill for a research worker. It is something to have had the first word on such a topic; having the last word is impossible, but with adequate documentation one can have the last word on the first.
| AN OCCASIONAL BACKWARD GLANCE |
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A cautionary tale was finding that few investigators read articles more than 5 years old, a practice encouraged by electronic retrieval of publications. However, some scientists still care about how their fields opened up, and a few are even interested in the history of branches of science other than their own. Recapitulating the history of sickle-cell research is currently being used as an exercise in science education and is reported to increase student's understanding of the nature of science (![]()
When I lecture on the application of genetics to identify therapeutic targets, students are enthusiastic. The achievements in that field are already impressive, and the promise is even greater. The promise will be realized for the most part by scientists who are now beginning their careers, and some of them will cast a backward glance at how it all began. Looking back in science carries no penalties, as it did for Orpheus and Lot's wife.
| ACKNOWLEDGMENTS |
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Colleagues who contributed to the research reviewed here are too numerous to list. They and I know where they fit into the stories. The collaboration and support of my wife, Elsie Eugui, throughout the development of MMF is gratefully acknowledged. Among Syntex colleagues who participated in that program, two deserve special mention: Peter Nelson, who synthesized derivatives of MPA, and Yutaka Natsumeda, for assaying the effects of MPA on isoforms of IMPDH. Thank you all for contributing to a successful outcome.
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|---|
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