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Alternative Genetic Foundations for a Key Social Polymorphism in Fire Ants
Kenneth G. Rossa, Michael J. B. Kriegera, and D. DeWayne Shoemakerba Department of Entomology, University of Georgia, Athens, Georgia 30602
b Department of Entomology, University of Wisconsin, Madison, Wisconsin 53706
Corresponding author: Kenneth G. Ross, 413 Biological Sciences Bldg., University of Georgia, Athens, GA 30602-2603., kenross{at}uga.edu (E-mail)
Communicating editor: M. FELDMAN
| ABSTRACT |
|---|
Little is known about the genetic foundations of colony social organization. One rare example in which a single major gene is implicated in the expression of alternative social organizations involves the presumed odorant-binding protein gene Gp-9 in fire ants. Specific amino acid substitutions in this gene invariably are associated with the expression of monogyny (single queen per colony) or polygyny (multiple queens per colony) in fire ant species of the Solenopsis richteri clade. These substitutions are hypothesized to alter the abilities of workers to recognize queens and thereby regulate their numbers in a colony. We examined whether these same substitutions underlie the monogyny/polygyny social polymorphism in the distantly related fire ant S. geminata. We found that Gp-9 coding region sequences are identical in the polygyne and monogyne forms of this species, disproving our hypothesis that one or a few specific amino acid replacements in the protein are necessary to induce transitions in social organization in fire ants. On the other hand, polygyne S. geminata differs genetically from the monogyne form in ways not mirrored in the two forms of S. invicta, a well-studied member of the S. richteri clade, supporting the conclusion that polygyny did not evolve via analogous routes in the two lineages. Specifically, polygyne S. geminata has lower genetic diversity and different gene frequencies than the monogyne form, suggesting that the polygyne form originated via a founder event from a local monogyne population. These comparative data suggest an alternative route to polygyny in S. geminata in which loss of allelic variation at genes encoding recognition cues has led to a breakdown in discrimination abilities and the consequent acceptance of multiple queens in colonies.
A major goal in evolutionary biology is to understand the genetic architecture underlying complex adaptations (![]()
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One rare example in which a candidate gene of major effect on a key social trait has been identified involves the gene Gp-9 in fire ants. Many fire ant species display two fundamentally different types of social organization distinguished by, among other features, the number of egg-laying queens in a colony (![]()
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The Gp-9 sequence of a monogyne S. geminata specimen was determined previously by ![]()
In this article we characterize the Gp-9 sequences of polygyne S. geminata from northern Florida. We also describe in detail the population genetic structure of both social forms of this species in this area, and we compare these results with those from S. invicta in order to comprehensively evaluate the likelihood that polygyny evolved via analogous routes in both lineages. We find that the polygyne S. geminata that we studied possess the same Gp-9 allele reported previously for the monogyne form, indicating that the molecular mechanisms underlying regulation of social organization in fire ants are not universal. On the other hand, the polygyne study population appears to have experienced a recent population bottleneck that resulted in a loss of genetic diversity and the emergence of reproductive isolation from the monogyne form. These features, which are uncharacteristic of polygyny in S. invicta, support the conclusion that the origin of polygyny in the genus Solenopsis has followed at least two different evolutionary routes, with alternative genetic foundations for regulation of colony queen number characteristic of each.
| MATERIALS AND METHODS |
|---|
Sample collection and processing:
Samples of S. geminata were collected from 37 nests in Gainesville, Florida and the immediately surrounding area (Alachua County) in the spring of 2002. Samples of 8 additional nests of this species were collected in Leon County, Florida, some 200 km distant from the other nests, during the same period. Many adult workers were collected from each nest. In addition, worker brood and wingless (presumably egg-laying) queens were collected opportunistically from 22 and 7 of the nests, respectively. Collected ants either were frozen in the field on dry ice or were returned alive to the laboratory for further processing. All samples were stored in a laboratory freezer at -80° pending genetic analysis. Collected ants were identified as S. geminata by J. P. Pitts on the basis of the morphological characteristics of voucher specimens from several nests (![]()
The mating status of a subset of the wingless queens collected from polygyne nests was determined by one of two methods. Nine queens from three nests were dissected and the spermatheca (sperm storage organ) of each was examined; mated queens possessed opaque, whitish spermathecae whereas unmated queens possessed translucent spermathecae (e.g., ![]()
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Total DNA was extracted from individual worker ants from each nest with the Puregene kit (Gentra Systems, Research Triangle Park, NC) by following the manufacturer's instructions for solid tissue samples.
Allozyme electrophoresis:
Genotypes of S. geminata workers were determined at eight allozyme loci. Electrophoresis was conducted in 14% horizontal starch gels using extracts of soluble proteins derived from individual larval (Hexa), pupal (Acoh-5 and Est-6), or adult (Est-2, G3pdh-1, Gpi, Fbp-2, and Odh) workers (for methods, see ![]()
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Microsatellite analysis:
Genotypes of S. geminata workers were determined at three microsatellite loci (Sol-11, Sol-42, and Sol-49). These loci constitute a subset of the polymorphic dinucleotide-repeat loci developed for S. invicta by ![]()
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mtDNA sequencing:
A 784-bp portion of the COI gene from the mtDNA genome of S. geminata workers was sequenced. The PCR reaction mixes, sequences of external PCR and sequencing primers, and thermal cycling conditions are described in ![]()
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Gp-9 sequence analyses:
We sequenced the entire coding regions of the Gp-9 gene from two wingless (presumably egg-laying), mated S. geminata queens collected from separate confirmed polygyne nests. Wingless queens were selected as source material because such females invariably bear b-like alleles in the polygyne form of S. invicta (![]()
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To efficiently screen S. geminata workers for the presence of b-like nucleotide substitutions at Gp-9, we designed two different two-stage PCR assays that distinguish b-like from B-like sequences in all fire ant species studied to date. One assay detects the b-like substitution at codon 95, whereas the other detects the b-like substitution at codon 139 (Fig 2). We screened for these two substitutions separately because either or both may underlie the functional differences in the allelic GP-9 proteins. In the first stage of both assays, a segment of Gp-9 was amplified using primers that bind to invariant sites in all fire ant species just upstream and downstream of codons 95 and 139, respectively. PCR reactions were set up in 20-µl reaction mixtures containing 1.6x PCR buffer (2.4 mM MgCl2), 1x Q-solution, 100 µM dNTPs, 0.5 µM each of primers Gp-9.for (5'-GGAGCTGATTATGATGAAGAGAAAAT-3') and Gp-9.rev (5'-AGCACAGCTTCAGCTGCTAAGA-3'), 1 unit of Taq DNA polymerase, and 2 µl of template DNA. The following cycling profile was used: initial denaturation at 92° (2 min); 35 cycles of 92° (45 sec), 57° (45 sec), and 72° (1 min); and a final step at 72° (5 min). After confirming successful amplification of the predicted 380-bp product via electrophoresis of an aliquot in an ethidium bromide-stained agarose gel, a 1:200 dilution of this product was used as the template for two separate second-stage PCRs. The stage-1 PCR product was used as the template for the stage-2 PCRs (rather than genomic DNA) because this enhanced the sensitivity of and reduced variation in the assays.
In the two separate stage-2 PCRs, primers fully complementary to b-like but not B-like sequences at either codon 95 or 139 were employed to achieve selective amplification of the same gene segment amplified in the first stage. The selective stage-2 primers are identical to those used initially, but include additional 3' nucleotides matching the diagnostic nucleotides of codons 95 and 139 in all b-like alleles. Each of these selective stage-2 primers was paired with the appropriate general primer from the stage-1 PCR to amplify templates with b-like sequences at either codon 95 or 139; thus, the presence of the predicted 380-bp amplicon signified the presence of a b-like sequence at either codon (depending on the particular assay) in the source individual. Reactions in the stage-2 PCR for b-like codon 139 were set up in 20-µl reaction mixtures containing 1x PCR buffer, 100 µM dNTPs, 0.08 µM each of primers Gp-9.for and all_b.rev (5'-AGCACAGCTTCAGCTGCTAAGAT-3'), 1 unit of Taq DNA polymerase, and 2 µl of diluted product from the stage-1 PCR. The cycling profile was identical to that for the stage-1 PCR, but with an annealing temperature of 69.3°. Reactions in the stage-2 PCR for b-like codon 95 were set up in 20-µl reaction mixtures containing 1x PCR buffer, 100 µM dNTPs, 0.04 µM each of primers all_b.for (5'-GGAGCTGATTATGATGAAGAGAAAATA-3') and Gp-9.rev, 1 unit of platinum Taq DNA polymerase (Invitrogen), and 2 µl of diluted product from the stage-1 PCR. The following cycling profile was used for this reaction: initial denaturation at 94° (2 min) and 16 cycles of 94° (30 sec), 65° (30 sec), and 72° (35 sec). Preliminary experiments using template DNA from fire ants of eight species whose Gp-9 was sequenced by ![]()
Three S. geminata workers from each polygyne nest (n = 51), as well as two from each monogyne nest (n = 54), were surveyed for b-like sequences at each of the two crucial codons using these PCR assays.
Phylogenetic analysis of mtDNA sequences:
A minimum spanning tree (![]()
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Assay for Wolbachia:
S. geminata workers were screened for the presence of the bacterial endosymbiont Wolbachia by means of a diagnostic PCR assay, using the primers Wsp81F and Wsp691R [for methods, see ![]()
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gene were included in the PCRs to provide an internal positive control for successful amplification. All samples for which the mtDNA was sequenced were screened for Wolbachia.
Determination of colony social organization:
The study of ![]()
Colony and population genetic data analyses:
Allele frequencies at the nine nuclear loci were estimated for the monogyne and polygyne forms separately, as well as for the metapopulation as a whole, using the program RELATEDNESS 5.0 (![]()
Genotype proportions in the two forms were tested for conformity to Hardy-Weinberg expectations (HWE) using exact tests implemented in the program GENEPOP 3.3 (![]()
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Genetic differentiation between the monogyne and polygyne forms was evaluated by conducting exact tests implemented in GENEPOP 3.3 (see ![]()
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A number of procedures were conducted to assess the probability that the polygyne study population was derived from the monogyne form after having experienced a reduction in effective population size (a population bottleneck). Allelic richness (A, mean number of alleles per nuclear locus) was estimated for each form. For the monogyne form this was done by means of repeated random subsampling (![]()
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Two statistics developed to detect past bottlenecks and/or the population expansions expected to follow such events were estimated from the S. geminata microsatellite allele size and frequency data, and their values were compared between the social forms. The M ratio of ![]()
Computer simulations of a founder event:
We wished to learn whether a population bottleneck and subsequent expansion, as would have occurred if the polygyne study population was derived via a founder event from the local monogyne form, could reasonably explain the specific patterns of variation observed in the polygyne form at all three classes of markers. Specifically, we asked whether such an event could give rise to the different levels of polymorphism between the social forms of S. geminata, as well as among the three classes of markers within the polygyne form. Computer simulations were carried out to model the effects of such an event on allele/haplotype counts (see Appendix A). The models simulated the founding of an ancestral polygyne population by mated queens originating from the local monogyne source population, using the observed allele frequencies to specify the genotypes of founder queens and their mates. Subsequent generations of descendant queens mated either with males produced in the newly founded population or with males immigrating from the neighboring monogyne population. The models assumed Hardy-Weinberg genotype proportions at the nuclear markers and random mating with respect to genotype/haplotype. We varied several model parameters, including numbers of founder queens, population growth rates, extent of gene flow from the monogyne form, and the presence of mutation at the microsatellites. The numbers of alleles/haplotypes at each marker were tracked through time as the simulated populations grew and were compared with the actual counts obtained from the polygyne study population.
| RESULTS |
|---|
General results:
Each of the six polymorphic allozyme loci scored in S. geminata was found to have two electrophoretically distinguishable alleles. The three microsatellite loci possessed from 7 to 17 alleles, with single dinucleotide differences separating almost all of the most similar alleles at each locus. Fifteen unique sequence haplotypes were detected at the COI gene of the mtDNA (GenBank accession nos.
AY254475,
AY254476,
AY254477,
AY254478,
AY254479,
AY254480,
AY254481,
AY254482,
AY254483,
AY254484,
AY254485,
AY254486,
AY254487,
AY254488,
AY254489), which encompass a total of 19 synonymous point substitutions over the 784 bp of sequence. Average pairwise sequence divergence among the 15 haplotypes is modest at 0.576% (SD = 0.076%). Considerable AT bias exists in the base composition of these sequences (average of 63.44% AT), consistent with previous studies of this mtDNA gene in other fire ants (![]()
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Colony social organization:
Seventeen nests of the 44 studied were determined to constitute polygyne colonies on the basis of complex worker genotype arrays observed at the nuclear markers; such complex arrays are inconsistent with the simple family structure characteristic of monogyne colonies (e.g., ![]()
2000 m2) patch on a roadside in the city of Gainesville (Alachua County). Each of the remaining 27 nests sampled possessed worker genotype arrays at the allozyme and microsatellite loci indicative of monogyny (e.g., ![]()
Colony and population genetic structure:
As expected given the genotype arrays observed, average worker nestmate relatedness in the 27 monogyne nests is statistically indistinguishable from the value of 0.75 expected for daughters in simple families (Fig 4). Surprisingly, nestmate relatedness in the 17 polygyne nests averages even higher than this (0.88), despite the evidence for multiple egg-laying queens in each nest. However, this value is inflated by two factors. First, the allozyme loci are virtually monomorphic in the polygyne form (below), contributing to elevation of the relatedness estimates based on all loci. When only the three microsatellite loci were employed, the estimate of nestmate relatedness in this form falls significantly below the simple-family value of 0.75 (Fig 4). Second, substantial microsatellite allele frequency differences exist between the forms (below), contributing to an elevation of relatedness estimates over the expected pedigree values when the entire metapopulation is used as the reference population (e.g., ![]()
0.2 (Fig 4). Average relatedness between workers from different polygyne nests, estimated by necessity using the metapopulation as the reference population, again is substantial, exceeding 0.75 when all nine loci are used and 0.5 when just the microsatellites are employed (Fig 4). In aggregate, the relatedness data indicate that the entire polygyne study population may represent an extended family derived from relatively few ancestors, with each nest likely inhabited by a mixture of close and more distantly related kin.
|
Analyses of genotype proportions in the monogyne form revealed that the genotypes at the nine nuclear loci departed significantly from HWE in 7 of the 100 tests conducted, a slight excess over the 5% of significant tests expected by chance. The single-locus FIS values associated with these 7 significant tests typically were negative, indicating that the departures were due to an excess of heterozygotes at some loci. These results suggest a general conformity of the genotypes observed in the monogyne form to HWE and rule out widespread local inbreeding as a feature of the mating biology. Similar analyses in the polygyne form were limited to the three microsatellite loci, for which variation was sufficient to conduct such tests. The combined significance of departure from HWE at these loci reached the P < 0.05 level in just 4 of the 100 tests conducted, an outcome expected by chance. Thus, there also is no evidence for extensive consanguineous mating in the polygyne population of S. geminata that we studied.
Clear differences exist between the monogyne and polygyne forms in their allele and haplotype frequencies (see TABLE ABB). This is most obvious for the allozyme loci and the mtDNA. A single allele is fixed or virtually fixed in the polygyne form at each of the six allozyme loci, yet at four of these loci (Acoh-5, Est-6, Gpi, and Odh) these same alleles occur at only moderate frequencies in the monogyne form. A single mtDNA haplotype is fixed in the polygyne form, yet this haplotype was not among the 14 haplotypes found in the monogyne form. Allele frequency disparities also are apparent between the forms at the microsatellite loci, in the frequencies of Sol-11153, Sol-42161, and Sol-49158, for instance. Exact tests of the allele and haplotype frequency differentiation between the social forms confirmed that they are highly genetically divergent. At the nuclear loci, all 25 tests conducted indicated highly significant between-form differentiation across all loci (all P < 0.0001), with the same results found individually for each of the seven most polymorphic loci. Not surprisingly, the single test conducted on the mtDNA haplotype frequencies similarly revealed highly significant between-form differentiation (P < 0.0001). Results of these tests were similar when the monogyne sample was composed of all monogyne nests or just the Alachua County nests (which can reasonably be considered to be sympatric with the polygyne population).
Estimates of FST between the social forms, averaged over the 25 samples of single individuals per nest, were 0.27 for the allozymes and 0.17 for the microsatellites, with an estimate of 0.23 over all nine nuclear loci (Alachua County nests only). For the mtDNA haplotypes, FST was estimated at 0.51 (Alachua County nests only). Thus, about one-quarter of the total nuclear gene diversity and one-half of the mtDNA diversity reside between rather than within the social forms where they occur in effective sympatry.
Genetic diversity in the two social forms:
A comparison of the numbers of variants found at each class of marker gene in each form of S. geminata is shown in the top panel of Fig 5. A total of 44 nuclear alleles were detected in the monogyne form (40 in the Alachua County samples), whereas 33 alleles were found in the polygyne form. Fourteen mtDNA haplotypes were detected in the monogyne form (12 in the Alachua County samples), whereas only a single haplotype was found in the polygyne form. The differences in numbers of nuclear alleles between the forms are reflected in the higher estimates of allelic richness (A) for the monogyne than for the polygyne form (Table 1, top). None of the 50 values of A obtained by subsampling the monogyne form was as low as the value obtained for the polygyne form, regardless of whether only the allozymes, only the microsatellites, or all nuclear markers were considered. Paired t-tests over the nine nuclear loci formally confirmed that the monogyne form has higher allelic richness than the polygyne form (t = 3.04, P = 0.016), even when just the Alachua County samples were considered (t = 3.00, P = 0.017).
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Estimates of expected heterozygosity at the nuclear loci (Hexp), which reflect the frequencies as well as numbers of alleles, also are higher in the monogyne form than in the polygyne form (Table 1, top). Paired t-tests over the individual-locus heterozygosities again confirmed that this difference is significant (t = 4.98, P = 0.001 for the Alachua County samples). Haplotype diversity (h), which is zero in the polygyne form, is very high in the monogyne form (Table 1), reflecting the large number of haplotypes discovered in our limited number of samples.
The relatively low genetic variation in the polygyne form of S. geminata suggests that this population may have suffered a reduction in effective population size (bottleneck), perhaps associated with its derivation via a founder event from the local monogyne population or similar ancestral population. The results of two tests designed to detect the genetic signatures of such an event in the microsatellite data are presented in Table 2. Values of the M ratio generally are lower in polygyne than in monogyne S. geminata, reflecting the disproportionate reduction in allele numbers relative to allele size ranges in the polygyne form expected following a bottleneck (![]()
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Computer simulations of a founder event:
Computer simulations were undertaken to determine whether a founder event in which the ancestral polygyne S. geminata population was derived from the local monogyne population could reasonably explain the different levels of variation observed between the forms, as well as the different levels observed among the three classes of markers within the polygyne form. A relatively narrow window of model parameter values led to allele/haplotype counts in such simulated populations that were compatible with actual counts in the polygyne study population for all of the markers (see Appendix A). The highest probabilities of the simulated and observed data being compatible were reached when the modeled population was founded by a small number of mated queens (715), had a low growth rate (
20%), and experienced a small amount of gene flow from the monogyne source population (25%). Incorporating mutation at the microsatellites improved the probability of the simulation results being compatible with the observed data but did not substantially widen the range of parameter values leading to such results. The most significant conclusion from these simulations is that the particular patterns of genetic variation we observed in the polygyne study population can be explained by assuming that it is descended from a founder population derived from the neighboring monogyne form. The simulation results further suggest that such a founder event is likely to have occurred within the past 50 generations (<100 years).
Examination for hybridization and infection by Wolbachia:
We examined whether interspecific hybridization or infection with Wolbachia may be associated with polygyny in S. geminata at our study site. No alleles diagnostic for the sympatric fire ant species S. invicta or S. xyloni were observed in the samples of S. geminata obtained for this study. Rather, all 882 workers surveyed at the two diagnostic allozyme loci possessed only the null allele at Est-2 and the 105 allele at G3pdh-1, alleles characteristic of S. geminata but not known to occur in the other species (![]()
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Application of a diagnostic PCR assay for Wolbachia resulted in the lack of amplification of the major surface protein gene in all S. geminata samples. Thus, there is no evidence that the study populations of either form harbor this common bacterial endosymbiont of other fire ant species (e.g., ![]()
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Gp-9 sequence of polygyne S. geminata:
All eight Gp-9 coding region sequences from each of two polygyne S. geminata queens were identical to the sequence obtained from a monogyne queen of this species from Florida in a previous study (![]()
| DISCUSSION |
|---|
The objective of this study was to compare sequences of the Gp-9 gene from the polygyne social form of the fire ant S. geminata with the sequence found in the monogyne form of this species, as well as with sequences from fire ant species in the S. richteri clade displaying a similar polymorphism in colony social organization. We hypothesized that if polygyny in S. geminata originated in the same manner as in S. invicta, a well-studied member of the S. richteri clade, then the Gp-9 variant associated with polygyny in S. geminata would code for particular amino acid residues characteristic of the polygyny-inducing b-like alleles in the S. richteri-clade species. Specifically, we reasoned that polygyne S. geminata would bear a Gp-9 sequence coding for isoleucine at position 95 or 139 (or both); these residues are unique to all b-like alleles, and thus one or both are hypothesized to be responsible for the altered queen-recognition capabilities of workers in polygyne nests (![]()
Gp-9 sequences in the polygyne S. geminata population we studied were found to be identical to the coding region sequence previously determined for the monogyne form of this species (![]()
Gp-9 notwithstanding, we found marked genetic differences between the polygyne and monogyne forms of S. geminata, and these differences are not paralleled in the two social forms of S. invicta. These findings are taken to support the necessary conclusion from the Gp-9 sequence data that polygyny has not evolved in analogous fashion in S. geminata and the S. richteri clade. The social forms of S. geminata are strongly differentiated at both their nuclear and mitochondrial genomes, a pattern not found in S. invicta. Whereas <2% of the total nuclear diversity in native S. invicta from the Corrientes and Formosa populations in Argentina resides between the social forms (![]()
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The two forms of S. geminata differ further in that genetic diversity is significantly reduced in the polygyne form relative to the monogyne form, with this reduction apparently due to a substantial bottleneck in the history of the polygyne population. Numbers of nuclear alleles and mtDNA haplotypes are significantly lower in the polygyne than in the monogyne form of S. geminata, as are the expected heterozygosity and haplotype diversity. Again, these differences are not characteristic of S. invicta: numbers of alleles (allelic richness) and numbers of haplotypes are virtually identical between the sympatric forms in each of two native populations (Fig 5, bottom; Table 1, bottom), and the expected heterozygosity and haplotype diversity in the paired forms are similar as well (Table 1, bottom; heterozygosity does not differ significantly between sympatric S. invicta forms: paired t-tests, both P > 0.05).
These comparative data lead us to speculate that the polygyne form of S. geminata originated from a small, isolated founder population derived from the nearby monogyne population, with the inception of polygyny driven by a loss of genetic variation rather than by specific amino acid replacements at Gp-9, the crucial evolutionary event presumed to have driven the origin of polygyny in the S. richteri-clade species. Monogyny generally is assumed to be ancestral to polygyny in ants and other social Hymenoptera (e.g., ![]()
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A loss of genetic variation has been invoked previously to explain another radical shift in colony social organization in an ant, and the proximate genetic mechanisms hypothesized to be involved may pertain also to the inception of polygyny in S. geminata. The Argentine ant, Linepithema humile, exhibits well-developed nestmate discrimination that functions to maintain distinct colony boundaries in its native South American range. In areas where it has been introduced, such as the western United States and southern Europe, such nestmate discrimination is all but absent, leading to the development of geographically extensive "supercolonies" in which individual ants mix freely among physically distinct nests (![]()
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Reduced genetic variation in the polygyne form of S. geminata is the only factor we could identify that corresponds with this alternative social organization and that therefore constitutes a plausible causal agent in the social transition from monogyny. Gp-9 sequences apparently are identical between the forms, indicating that changes in the recognition capabilities of workers associated with amino acid replacements in GP-9 protein did not elicit the switch to polygyny. Inbreeding cannot be considered a contributory factor to the divergence between the forms, nor apparently can habitat specialization, given that colonies of both forms were collected alongside one another at one site in Alachua County. Wolbachia infections, which potentially could explain both the loss of mtDNA variation in the polygyne form [via selective sweeps and hitchhiking (![]()
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We conclude from this study that polygyny evolved via a different route in S. geminata than in fire ant species in the S. richteri clade, although both evolutionary scenarios invoke changes in the molecular components of the chemoreception systems functioning in individual recognition of conspecifics. On the one hand, evolution of polygyny via nonsynonymous substitutions in the presumed odorant-binding protein gene Gp-9, characteristic of the S. richteri-clade species, seems to involve a change in the pheromone-signal transduction component, with polygyne workers that bear the derived b-like alleles thought to exhibit altered recognition capabilities compared to other workers. On the other hand, evolution of polygyny via loss of alleles at loci encoding recognition cues seems to involve a reduction in the diversity of chemical labels necessary for the proper functioning of a discrimination system that serves in both maintaining colony integrity and regulating queen number. Additional polygyne populations of S. geminata occurring elsewhere in its vast range should be studied to determine whether Gp-9 sequence variation ever corresponds with polygyny in the manner we initially hypothesized or if reductions in effective population size are consistently evident in the history of these polygyne populations (e.g., ![]()
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| FOOTNOTES |
|---|
Sequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos.
AF427905 and
AY254475,
AY254476,
AY254477,
AY254478,
AY254479,
AY254480,
AY254481,
AY254482,
AY254483,
AY254484,
AY254485,
AY254486,
AY254487,
AY254488,
AY254489. ![]()
| ACKNOWLEDGMENTS |
|---|
We thank Sanford Porter and Walter Tschinkel for invaluable assistance in the field and Dietrich Gotzek for comments on the manuscript. This work was funded by Kenneth Ross and by grants from the laboratory of Laurent Keller; the National Science Foundation; the U.S. Department of Agriculture; the Georgia Agricultural Experiment Stations, University of Georgia; and the College of Agriculture and Life Sciences at the University of Wisconsin.
Manuscript received April 1, 2003; Accepted for publication August 12, 2003.
| APPENDIX A |
|---|
COMPUTER SIMULATIONS OF A FOUNDER EVENT PRODUCING THE ANCESTRAL POLYGYNE S. GEMINATA POPULATION
Methods:
Computer simulations were carried out to model the effects on allele/haplotype counts of a founder event in which the ancestral polygyne population was derived from the local monogyne form. The models simulated the founding of an ancestral polygyne population by mated queens from the local monogyne source population, using the observed allele frequencies to specify genotypes of the founder queens and their mates. Subsequent generations of descendant queens mated with males produced in the newly founded population or with males immigrating from the local monogyne population. The models assumed Hardy-Weinberg genotype proportions at the nuclear markers (as observed in our genetic data) and random mating with respect to genotype/haplotype. We varied several model parameters in the different simulation runs, including numbers of founder queens, population growth rates, extent of gene flow from the monogyne form, and the presence of mutation at the microsatellites. Allele/haplotype counts were tracked through time as the simulated populations grew.
Simulations were started by randomly picking N mated queens (N = 130) from the monogyne source population as founders. In each generation, the number of breeding queens was allowed to increase by a set rate until the population reached the carrying capacity of 150 queens. Six different growth rates were used: 5% (Nt = Nt-1 + 0.05 · Nt-1), 10% (Nt = Nt-1 + 0.1 · Nt-1), 20% (Nt = Nt-1 + 0.2 · Nt-1), 50% (Nt = Nt-1 + 0.5 · Nt-1), 100% (Nt = 2 · Nt-1), and exponential (Nt = Nt-12). Once a population reached the carrying capacity, the simulations were continued for 50 additional generations while holding population size constant. Some models incorporated male-mediated gene flow from the monogyne source population, which was set at 2.5, 5, or 20% (the proportions of breeding queens mating with immigrant monogyne males in each generation). Our mtDNA data suggest that queens do not mediate gene flow from the monogyne form to the polygyne form (see text), so this potential source of added genetic variation was not considered. Finally, some models included mutation of the microsatellite alleles. We set the mutation rate at µ = 10-4 (![]()
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The numbers of alleles/haplotypes at each marker gene were counted in each generation of the bottlenecked population in each simulation run and compared with the actual counts obtained from the polygyne study population. Simulation results were considered compatible with the observed data when the following counts were obtained concurrently: a single mtDNA haplotype; one allele at the allozyme loci Acon-5, Fdp-2, Gam, and Gpi; at least one allele at the allozyme loci Est-6 and Odh; and at least 6, 14, and 5 alleles at the microsatellite loci Sol-11, Sol-42, and Sol-49, respectively.
Results:
One goal in simulating a founder event underlying the origin of the polygyne study population was to account for the negligible diversity at the allozymes and mtDNA in combination with the considerable diversity at the microsatellites that we observed in this population. In general, simulated allele/haplotype counts at the allozymes and mtDNA were compatible with the observed data in the early generations following the bottleneck, whereas simulated allele counts at the microsatellites tended to be compatible with observation in later generations. Thus, simulation results that accurately portrayed the overall patterns of polymorphism observed in the polygyne population were obtained for only a relatively narrow window of generations and range of parameter values (e.g., Fig 1).
The most important factors affecting the outcomes of the simulations were the number of founder queens, extent of gene flow, and population growth rate. Only simulations with intermediate numbers of founders (715) yielded results compatible with the observed data for all three classes of markers (Fig 1). Similarly, only simulations with intermediate levels of gene flow from the monogyne form (2.55%) resulted in compatible allele counts when mutation of the microsatellites was not considered. Even with mutation, the absence of gene flow or high gene flow (20%) rarely produced compatible simulation results. Finally, only the three slowest population growth rates (5, 10, and 20%) produced allele/haplotype counts fully compatible with the observed counts across all markers.
In general, increased population growth rates narrowed the range of generations for which compatible simulation results were obtained (Fig 1). Similarly, increased growth rates reduced the ranges of gene flow rates and numbers of founders yielding compatible results. For instance, at 20% growth, only simulations with a single parameter setting for gene flow (2.5%) and founder number (7) produced compatible results, and these were obtained for only two generations (9 and 10). In contrast, at 5% growth, compatible results were obtained with two gene flow rates (2.5 and 5%) and with variable founder numbers (715 founders in runs with 2.5% gene flow), and results compatible with observation occurred for up to 45 generations.
Incorporating mutation at the microsatellite loci had little effect on the ranges of parameter values that yielded simulation data compatible with the observed data. The only conspicuous exception was that, at 10% population growth, gene flow from the monogyne form was not required when mutation was invoked [however, compatible data were produced for only a few early generations (26) under these conditions]. Even though microsatellite mutation had negligible effects on the ranges of compatible parameter values, it did significantly increase the probabilities of obtaining compatible results. Over all simulations with at least some compatible outcomes, the frequency of obtaining such results when assuming microsatellite mutation significantly exceeded the frequency without this assumption (paired t-test: t = 11.84, d.f. = 14, P < 0.0001). Nonetheless, microsatellite mutation need not be invoked for the patterns of genetic variation observed in the polygyne study population to be explained as the result of a founder event.
Simulation results generally were compatible with observation for only relatively few generations following the bottleneck, with such results typically appearing by generation 10 and disappearing by generation 50 (Fig 1). Assuming that the polygyne study population did indeed originate via a founder event from the local monogyne form, it would appear from our simulations that this event occurred at some point within the past century.
| APPENDIX 1 |
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