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Quantitative Trait Loci for Susceptibility to Tapeworm Infection in the Red Flour Beetle
Daibin Zhonga, Aditi Paia, and Guiyun Yanaa Department of Biological Sciences, State University of New York, Buffalo, New York 14260
Corresponding author: Guiyun Yan, Hoch 220, State University of New York, Buffalo, NY 14260., gyan{at}buffalo.edu (E-mail)
Communicating editor: J. A. BIRCHLER
| ABSTRACT |
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Parasites have profound effects on host ecology and evolution, and the effects of parasites on host ecology are often influenced by the magnitude of host susceptibility to parasites. Many parasites have complex life cycles that require intermediate hosts for their transmission, but little is known about the genetic basis of the intermediate host's susceptibility to these parasites. This study examined the genetic basis of susceptibility to a tapeworm (Hymenolepis diminuta) in the red flour beetle (Tribolium castaneum) that serves as an intermediate host in its transmission. Quantitative trait loci (QTL) mapping experiments were conducted with two independent segregating populations using amplified fragment length polymorphism (AFLP) markers and randomly amplified polymorphic DNA (RAPD) markers. A total of five QTL that significantly affected beetle susceptibility were identified in the two reciprocal crosses. Two common QTL on linkage groups 3 and 6 were identified in both crosses with similar effects on the phenotype, and three QTL were unique to each cross. In one cross, the three main QTL accounted for 29% of the total phenotypic variance and digenic epistasis explained 39% of the variance. In the second cross, the four main QTL explained 62% of the variance and digenic epistasis accounted for only 5% of the variance. The actions of these QTL were either overdominance or underdominance. Our results suggest that the polygenic nature of beetle susceptibility to the parasites and epistasis are important genetic mechanisms for the maintenance of variation within or among beetle strains in susceptibility to tapeworm infection.
POPULATION biologists have widely recognized the potential importance of parasites in host ecology and evolution. Parasites are intimately dependent on the host for survival, live at the expense of the host, and often have deleterious effects on host reproductive success. Thus, parasites can be important selective agents on hosts. Parasites have been invoked as causal agents in the maintenance of sex (![]()
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In many cases, the effects of parasites on host ecology are influenced by the magnitude of host susceptibility to parasites. For example, host mortality and reduction in reproduction and parasite-induced behavioral changes are a function of infection intensity (the number of parasites in an infected individual; ![]()
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The tapeworm Hymenolepis diminuta has been extensively used in the laboratory for parasitological, physiological, and ecological research (![]()
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Most traits of economic and medical importance in human, animal, or plant species are polygenic. ![]()
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| MATERIALS AND METHODS |
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Selection for highly susceptible and highly resistant beetle populations:
Two Tribolium castaneum strains, cSM and TIW1, were used in this study. The strain cSM was created by combining several laboratory strains in the 1970s (![]()
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5 g of flour medium and randomly paired. Eggs from each female were collected, and adult beetles were dissected. Offspring from three cSM pairs with the highest infection intensity (number of parasites in an infected individual) and three TIW1 pairs with no parasite infection were reared to adults, while the offspring from other pairs were discarded. We repeated this process for three generations and selected resistant TIW1 and susceptible cSM individuals for pairwise mating (see below). Throughout the experiments, all beetles were raised in 8-dram shell vials containing 5 g standard medium (95% by weight fine-sifted whole wheat flour and 5% dried powdered brewer's yeast). Experimental vials were placed in a dark incubator regulated at 29° and 70% relative humidity.
F2 segregating populations and beetle susceptibility to tapeworm infection:
Two segregating populations were set up for QTL mapping. The first was generated from pairwise mating between a TIW1 male and a cSM female and F1 intercross (hereafter referred to as cross 1). The second was from pairwise mating between a cSM male and a TIW1 female and F1 intercross (hereafter referred to as cross 2). The parental TIW1 and cSM populations and F1 and F2 individuals from cross 1 and cross 2 were evaluated for tapeworm susceptibility using the method described above. All beetles in cross 1 (n = 123) and cross 2 (n = 120) groups were infected simultaneously; they were then dissected and the number of parasites was counted microscopically. Beetle carcasses were collected and used for the subsequent DNA analysis. Parasite tissues were discarded.
Molecular genotyping and linkage analysis:
Construction of a linkage map for T. castaneum using AFLP and RAPD markers was described in ![]()
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After screening 300 AFLP primer combinations and 50 RAPD primers, we selected 48 pairs of AFLP primer combinations and 12 RAPD primers for linkage mapping analysis on the basis of good reproducibility and the ability to obtain polymorphic fragments (Table 1). A linkage map was generated for each of the two independent segregating populations using MapMaker (version 3.0) computer software (![]()
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350 kb/cM. This map was used for the subsequent QTL analysis.
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QTL analysis:
QTL analyses were conducted separately for cross 1 and cross 2 to determine whether similar QTL may be identified in two crosses. Before the QTL analysis, the beetle susceptibility to tapeworm as measured by infection intensity was assessed for significant deviation from normality using the W-test (![]()
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Detection of digenic epistasis:
The above analysis did not test the effect of epistasis on beetle infection intensity, but epistasis may be an especially important genetic basis for quantitative traits with low heritability (![]()
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(1) |
where yijm is the phenotype of the mth F2 individual with the digenic genotype at loci i and j, and
i and
j are the main effects, which include the additive and dominance effects associated with loci i and j, respectively.
ij represents the effects of interactions between alleles at loci i and j.
ijm is the random residual effects and is assumed to have a normal distribution and a mean of zero.
The Mapmanager QTX15 computer software (![]()
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| RESULTS |
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Phenotypic variability in susceptibility to tapeworm parasites:
The tapeworm infection intensity distribution was examined in the two parental populations and in F1 and F2 populations that were exposed to the same amount of tapeworm egg-infected feces. Generally, strain cSM was significantly more susceptible than TIW1. The mean infection intensity and standard error in the parent cSM population were 6.2 ± 0.8 (n = 33) and 2.6 ± 0.7 (n = 17) for parental TIW1 population (ANOVA, F = 18.6, d.f. = 1, P < 0.0001). The individual beetles used for establishing the segregating population had been preselected for susceptibility to tapeworm: the cSM female had 9 parasites and the TIW1 male 0 parasites in cross 1 (cSM female x TIW1 male), and the cSM male had 2 parasites and the TIW1 female 0 parasites in cross 2 (cSM male x TIW1 female). The average infection intensity of F1 populations was 4.7 ± 0.8 (n = 8) and 4.1 ± 0.7 (n = 10) for cross 1 and cross 2, respectively. The mean parasite number in F2 populations was 3.7 ± 0.2 (n = 123) and 3.2 ± 0.2 (n = 120) for cross 1 and cross 2, respectively. The frequency distribution of infection intensity did not deviate significantly from normality (Fig 1). Therefore, infection intensity in F2 was not transformed for the subsequent QTL analysis.
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QTL analysis:
In the cross 1 group, we detected three QTL that significantly affect the susceptibility of the red flour beetle to tapeworm on linkage groups 3, 6, and 8, using the composite-interval mapping method (Fig 2). The LOD score plots for linkage groups with identified QTL provide a basis for identifying molecular markers most closely linked to the QTL (Fig 3). These three QTL are designated as hds[3, L1B1.69], hds[6, L1A16.141], and hds[8, L6B2.100]. Each QTL explained 8, 7, and 14% of the phenotypic variation in beetles' infection intensity (Table 2). The three QTL collectively explained
29% of the total phenotypic variation. The permutation tests indicated that all three QTL were statistically significant at the P < 0.01 level (Table 2). The three QTL had additive effects ranging from 0.62 to 1.17 parasites (Table 2). In particular, the QTL hds[6, L1A16.141] showed a positive additive regression coefficient (a = 0.62), suggesting that the susceptible strain cSM contributed alleles for increased infection intensity (Table 2). However, the negative dominance regression coefficient (d = -1.74) and negative ratio of additive regression coefficient to the dominance regression coefficient (h) indicate that the gene action at this QTL was primarily underdominance or recessive. In contrast, hds[3, L1B1.69] and hds[8, L6B2.100] exhibited negative additive and dominance regression coefficients and large positive h values, suggesting that the gene action at these two QTL was overdominance.
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For cross 2, four QTL were identified (Fig 2), and they were designated as hds[1, L2A16.155], hds[3, L1B1.69], hds[6, L1A16.141], and hds[10, L3A18.82]. The four QTL were statistically significant at the level of P < 0.01 or less (Table 2). In addition to the two QTL detected in cross 1 (hds[3, L1B1.69] and hds[6, L1A16.141]), two new QTL (hds[1, L2A16.155] and hds[10, L3A18.82]) were found in cross 2 (Fig 3). The four QTL accounted for 8, 9, 38, and 7% of variance in infection intensity, respectively (Table 2). QTL hds[3, L1B1.69] and hds[6, L1A16.141] identified in cross 2 exhibited the same gene actions as in cross 1. QTL hds[1, L2A16.155] and hds[10, L3A18.82] had additive effects of 0.96 and 0.65 parasites, respectively (Table 2). The positive additive regression coefficients at these two QTL suggest that the susceptible cSM strain contributes alleles for increased infection intensity in the beetles. The gene action was underdominance or recessive at hds[1, L2A16.155] and hds[6, L1A16.141], but overdominance at hds[3, L1B1.69] and hds[10, L3A18.82], as evidenced by the large h values (Table 2).
Digenic epistasis:
Six digenic epistatic QTL in cross 1 and one in cross 2 were detected for beetle infection intensity (Table 3). All digenic epistatic QTL in the cross 1 group involved a marker on linkage group 3 (L1A16.131). One digenic epistasis involved a previously identified QTL marker, L6B2.100, and it accounted for 5.9% of the total phenotypic variation. The six digenic epistatic QTL in the cross 1 group accounted for a total of 39.0% of the phenotypic variance, but the one digenic epistatic QTL in the cross 2 group explained only 5.0% of the phenotypic variance.
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| DISCUSSION |
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This study has demonstrated that susceptibility to tapeworm infection in red flour beetles is a polygenic trait. Using AFLP markers and the composite-interval mapping method, we determined that five chromosome regions significantly affected beetle susceptibility in two independent crosses. Two QTL on linkage groups 3 and 6 were identified in both crosses with similar effects on the phenotype. However, some unique QTL were identified in each cross, probably due to the fact that the beetle strains used for QTL mapping experiments were genetically heterogeneous and different QTL for beetle susceptibility to tapeworm parasites were present in the founding populations. The three QTL in one cross accounted for 29% of the total phenotypic variance while in another cross the four QTL accounted for 62% of the variance. In general, the effects of these QTL on infection intensity were small to medium, and three QTL exhibited overdominance effects and two were recessive or underdominant.
Because the main QTL accounted for a small proportion (29%) of the phenotypic variance in one cross, we extended the composite-interval mapping method to include digenic epistasis (![]()
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Parasite susceptibility in the beetle hosts depends on various factors, including (1) number of tapeworm eggs ingested, (2) parasite egg hatchability within the beetle's gut, (3) the ability of young oncospheres to penetrate through the beetle gut, and (4) viability of oncospheres to develop into cysticercoids (![]()
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In summary, we have identified five QTL that affect beetle susceptibility to the tapeworm. These QTL exhibited small to medium effects on infection intensity, and the actions of these QTL were overdominance or underdominance. Digenic epistasis was a major source of variance for susceptibility, and its effects on susceptibility depended on the beetles' genetic background. Our results suggest that the polygenic nature of susceptibility to tapeworm and epistasis are important mechanisms for significant variation within or among beetle strains in infection intensity.
| ACKNOWLEDGMENTS |
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We thank Monica Karsay-Klein and Christina Costa for technical assistance. Two anonymous reviewers provided constructive criticisms and suggestions. This research was supported by a grant from National Science Foundation, DEB 0076106.
Manuscript received May 4, 2003; Accepted for publication July 25, 2003.
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