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Mitochondrial Genotype Affects Fitness in Drosophila simulans
Avis C. Jamesa and J. William O. Ballardaa Department of Biological Sciences, University of Iowa, Iowa City, Iowa 52242-1324
Corresponding author: Avis C. James, 200 Old Biology Bldg., University of Iowa, Iowa City, IA 52242-1324., avis-james{at}uiowa.edu (E-mail)
Communicating editor: S. W. SCHAEFFER
| ABSTRACT |
|---|
Drosophila simulans is known to harbor three distinct mitochondrial DNA (mtDNA) haplotype groups (siI, -II, and -III) with nearly 3.0% interhaplotypic divergence but <0.06% intrahaplotypic diversity. With the large amount of genetic variation in this system, the potential power to detect intraspecific fitness differences in fly lines that carry distinct haplotypes is great. We test three life-history traits on fly lines with known sequence differences in the mtDNA genome after controlling the nuclear genome by backcrossing. We find that flies with the siI haplotype are fastest developing and have the lowest probability of surviving to three experimental periods (26, 1217, and 3439 days of age). Wild-type males with siIII mtDNA were more active while disruption of specific coadapted nucleo-mitochondrial complexes caused a significant decrease in activity. These results are discussed in the context of the geographic distribution of each haplotype.
IN humans, more than 50 inherited diseases of metabolism are known to involve mitochondria. Defects in mitochondrial function have also been linked to many of the common diseases of aging, including Alzheimer's dementia, Parkinson's disease, and Huntington's disease (![]()
This study tests the fitness of three divergent mitochondrial genotypes in Drosophila, in which evidence has been found for mitochondrial genotype or nucleo-mitochondrial interactions that influence fly fitness traits (![]()
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A mitochondrial DNA mutation may be positively selected if it causes a net increase in the fitness of the molecule in a specific local environment. Thus, if there is no recombination, the selective fixation of any mutation in the mtDNA will lead to the fixation of all variants in that genome by genetic hitchhiking (![]()
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Evidence of differential fitness of D. simulans haplotypes comes from micro-injection studies among eggs carrying siI, siII, and siIII mtDNA (![]()
Additional evidence for fitness differences among D. simulans mtDNA haplotypes comes from a combination of micro-injections and population cage competition studies. ![]()
While the three haplotypes are not equally fit in microinjection or population cage competition studies, it is quite possible that mitochondrial fitness differences were not causally involved in the divergence of the haplotypes. D. simulans is infected with the
-proteobacteria Wolbachia that can induce cytoplasmic incompatibility. In the simplest case incompatibility occurs when an uninfected female mates with an infected male, causing a reduction in the egg hatch rate (see ![]()
In this study, we test whether specific known sequence differences in the mtDNA genome of the three distinct D. simulans genotypes confer fitness differences after controlling the nuclear genome by backcrossing. The prediction is that life-history trait differences can be attributed to the mitochondrial genotype only if the effect occurs in flies with both native and introgressed nuclear genomes. Because of the large amount of genetic variation in this system the potential power to distinguish fitness between carriers of these three major haplotypes is considerable. In contrast, the genetic variation in D. melanogaster is nearly an order of magnitude lower than that in D. simulans.
We considered three measures of fitness. First, egg-to-adult development time was measured. Rapid pre-adult development time increases fitness, as these flies develop in ephemeral resources and are vulnerable to deterioration of their food and attack by predators and parasitoids. Second, we measured the activity level of males at three ages. The demonstrated role of mitochondria in the production of 90% of the energy our cells need to function makes activity levels particularly relevant when considering fitness. Third, we measured adult longevity. Specific mitochondrial haplotypes have been found at high frequencies in a population of older humans (![]()
| MATERIALS AND METHODS |
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Construction of introgression lines:
To disrupt any nucleo-mitochondrial gene complexes we introgressed the nuclear background from isofemale fly lines that carry each mitochondrial type into lines that carried each haplotype. The siI (TT01T) line was originally captured in Papeete, Tahiti, in July of 1998. The siII (MD106T) and siIII (RU07T) lines were collected in Antsirabe, Madagascar, and Salazie, Reunion, respectively, in March of 1998. The mitochondrial genomes of these lines (excluding the A + T-rich region) are included in ![]()
Virgin females from all lines were collected and mated individually to males from each of the other two lines. Virgin F1 females were collected and mated to males from the same line as their fathers. This was repeated until 12 generations of backcrossing were complete. In theory, 99.975% of the nuclear genome was replaced. However, it is unlikely that this level of replacement was achieved. ![]()
Two independent, replicate introgression lines per nuclear background and mitochondrial haplotype were employed for the experiments described here. The mtDNA of each line was tested and confirmed according to the assay presented at http://www.biology.uiowa.edu/ballard.
Production of experimental animals:
All lines were maintained at 25°. New cultures were started from flies that were <6 days old (![]()
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Statistical analyses:
In an attempt to show the main effects clearly we analyze these data using a stepwise approach considering a probability level of 0.05 as significant. First we consider only the major difference between these lines, the mitochondrial haplotype (model 1 in Table 2 Table 3 Table 4). This is biologically reasonable because there is no evidence of nuclear subdivision associated with the mitochondrial haplotypes (![]()
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We assume that the lines we used are representative of the lines within each haplogroup. This is valid, as there is little within-haplogroup divergence [the most divergent haplotype is siI, and ![]()
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Development time:
Times to pupariation and eclosion were recorded every 6 hr on 20 vials per line (but only 9 were collected for one introgression line). Larval development periods were estimated by subtracting the midpoint of the egg-laying period from the average time of pupation for each vial. Egg-to-adult times were determined by subtracting the midpoint of the egg lay from the average eclosion time for each sex. Pupal periods were calculated by subtracting the larval period from the egg-to-adult development time, per vial and sex. Development times were calculated per vial and averaged over each replicate.
Activity:
Virgin males were collected over a 12-hr period. Activity of replicate males was monitored on consecutive days 26, 1217, and 3439 after virgins were collected.
Activity was monitored with the "Drosophila Activity Monitoring System" (TriKinetics). With this system, flies are put in individual 10-mm tubes with food in one end and cotton in the other. The tubes are placed on a rack that has an infrared beam that bisects the middle of each tube. Computer software counts each time the fly breaks the beam by passing it.
On the day each male was to be tested, they were immobilized with ice and placed in the tubes between 11:30 a.m. and noon. At 2 p.m., the tubes were placed in the rack, and data collection began at 4 p.m. Thus the activity of each male was monitored for 22 hr, from 4 p.m. one day until 2 p.m. the next. On the consecutive days of data collection, tubes with each fly line were rotated (in groups of eight) to offset any bias due to location within the rack.
Data were collected as the total number of movements recorded per male in each monitoring session and analyzed per line over the males/days.
Longevity:
Virgin males that eclosed in a 12-hr period were collected and placed in new vials. Vials were kept at constant temperature (25°). Deaths were recorded between 5 and 7 p.m. every other day, and vials were changed every 4 days.
| RESULTS |
|---|
Development time:
The larval period differed between haplotypes (Table 2, Fig 1A). Larvae harboring the siI haplotype developed faster than those with the siII or siIII haplotype [a posteriori contrasts (t-tests on the least mean squares to detect which pairs are significantly different) of siI comparisons with siII and siIII were t = 4.16 and 5.77, respectively, both P < 0.001, while siII and siIII haplotypes were not significantly different].
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In the extended model, the larval period showed significant variation due to the mitochondrial haplotype, the nuclear background, and the interaction between them (Table 2). Flies with the siI haplotype developed faster than those with siII and siIII (a posteriori contrasts, t = 4.11 and 4.18, respectively, both P < 0.001). Flies with siII and siIII did not differ in larval development time (a posteriori contrast, t = 0.49, P = 0.63).
The nuclear effect in the extended model was a result of flies with the RU07T nuclear background developing significantly more quickly than ones with either the MD106T or the TT01T backgrounds (a posteriori contrasts, t = 7.16 and 5.74, respectively, both P < 0.001). Flies with the MD106T and TT01T nuclear background did not differ from each other (a posteriori contrasts, t = 1.46, P = 0.15). This is likely a line-specific result.
Relationships between the siI and siIII haplotypes and their nuclear backgrounds were responsible for the significant interaction term. When the siI haplotype was placed in the nuclear background of a fly line that was originally siIII, the larvae developed significantly faster than the original siI line or lines introgressed with the siII line's nuclear background (a posteriori contrasts: t = 6.11 and 7.44, respectively, P < 0.001 in both cases). In contrast, when the siIII haplotype was placed in the background of a fly line that was originally siI, development was slowed relative to the original siIII line or lines introgressed with the siII line's nuclear background (a posteriori contrasts: t = 5.35 and 4.45, respectively, P < 0.001 in both cases), while there was no difference when the siIII haplotype was placed in the nuclear background of MD106T (a posteriori contrasts: t = 1.71, P = 0.09). There were no differences when the siII haplotype was introgressed.
The pupal period was longer for males than for females (F1, 568 = 7990.18, P < 0.001), but there was no difference between haplotypes (F2, 568 = 1.39, P = 0.25) or in the interaction between haplotype and sex (F2, 568 = 2.24, P = 0.11).
Egg-to-adult development time is simply the larval and pupal periods combined and is not independent of either. Analyses of this trait tell us if the patterns in the larval period are strong enough to be apparent after adding on the pupal times that do not show pattern. Indeed the relationships of the characters show the same trend as the larval period (Fig 1B).
Activity:
Activity measurements of males were not statistically different between haplotypes and age classes or in the interaction between the two (Table 3, model 1). However, a posteriori contrasts of the combined data indicated that siIII flies moved more than siI flies (t = 2.07, P = 0.04); all other contrasts were not significant.
In the extended model, when the nuclear background and associated interaction terms were added, only the nuclear background showed significant differences (Table 3, model 2). The mitochondrial and nuclear effects are almost exclusively the result of low activity of lines with siI mtDNA introgressed into the MD106T nuclear background (Fig 2, a and b). As each of these introgressed lines showed low activity we suggest that these data demonstrate a clear fitness reduction caused by the disruption of coadapted nucleo-mitochondrial complexes rather than by a specific line effect.
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To further investigate the activity of males we extended our data by testing two additional recently collected nonintrogressed controls from each haplotype. When data from these lines are included with the data from the three other wild-type lines the activity of males harboring each mtDNA haplotype did not differ significantly (F2, 89 = 2.11, P = 0.12). However, males with siIII mtDNA moved more than males with siI mtDNA (a posteriori contrasts: t = 2.04, P = 0.04, Fig 2C); all other contrasts were not significant.
Longevity:
In the longevity study, survivorship curves were significantly different among fly lines with different haplotypes (Fig 3; Wilcoxon test for homogeneity between groups,
2 = 15.86, P < 0.001). Comparisons of haplotypes were as follows: siI and siII,
2 = 4.65, P = 0.03; siI and siIII,
2 = 7.56, P = 0.006; and siII and siIII,
2 = 0.67, P = 0.41. Thus, the survivorship curve of siI flies is exceptional.
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We compared the percentage surviving to each of the three age classes in our activity study (26, 1216, and 3438 days of age). ANOVA on arcsine-transformed data shows that the mitochondrial haplotype and age class influence the percentage surviving (Table 4). The age effect was simply due to the fact that as flies got older, survival decreased. There was no significant haplotype-by-age effect; thus the age classes can be collapsed (Fig 4). Fewer flies with the siI haplotype than fly lines with the siII or siIII haplotypes survived to the time periods (t = 3.83 and 4.12, respectively, P < 0.001 in each case), while fly lines with siII and siIII did not differ from each other (t = 0.26, P = 0.80). The activity data showed that siI flies were least active. One possible explanation for this result is that siI flies were less active because they were physiologically older than siII or siIII flies at each experimental period. This hypothesis is rejected because the activity measurements of males were not statistically different between age classes.
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Our extended model including the nuclear background shows these haplotypic results were robust (Table 4). There was no effect of the nuclear background, but there was an interesting haplotype-by-nuclear background interaction. Flies from siI lines survive significantly more successfully to our time periods if associated with their own nuclear background than with the nuclear background from the siII or siIII line (a posteriori contrast with siII, t = 3.01, P < 0.01; with siIII, t = 2.22, P < 0.05). Also, the siIII line survives more successfully to our time periods, although not significantly, with its original background than when introgressed with siI (t = 1.45, P = 0.14) or siII (t = 0.70, P = 0.47). Flies with siI and siIII mtDNA have never been collected in sympatry and are the two most genetically divergent haplotypes (![]()
| DISCUSSION |
|---|
We found significant differences among flies carrying distinct mitochondrial genotypes for both development time and survival. These mitochondrial effects were observed if we considered a simple model testing only the mitochondrial effects and a more complex model that also included the nuclear background, implying nucleo-mitochondrial interactions. Activity of siI males appears to be lower than that of siII or siIII males; however, this result was not robust to a two-way ANOVA including the nuclear genome.
It seems unlikely that Wolbachia infection can fully explain the geographic distribution of the mtDNA haplotypes. In contrast, it seems quite possible that the population subdivision observed in the mitochondrial genome of D. simulans is correlated with the Wolbachia strains that infect this species (![]()
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Our results show that flies with the siI haplotype develop faster and live for a shorter period of time than those with the other two haplotypes. Flies with the siI mitochondrial haplotype have been collected on the islands of Hawaii, Tahiti, New Caledonia, and the Seychelles Islands (![]()
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The siII haplotype is cosmopolitan, although it has not been collected in Hawaii, Tahiti, or New Caledonia. The siI and siII haplotypes have both been collected in the Seychelles, but not in sympatry. There is nothing exceptional in these data to help explain the wide geographic range of siII. One explanation is that flies with the siII haplotype are tolerant of temperature variations. As noted in MATERIALS AND METHODS, the lines employed here were collected near the equator to control for clinal variation. This was necessary as the siI and siIII lines have not been collected at sites with high latitudes. The transmission rates of Drosophila mtDNA haplotypes in flies made heteroplasmic by micro-injection can be temperature dependent across species (![]()
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The siIII haplotype has been collected from Tanzania, Kenya, Madagascar, and Reunion Island, where it is sympatric with the siII type. At sites where siII and siIII mtDNA have been collected in sympatry the frequency of the siIII type is always
40% (![]()
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In natural populations that have both the siII and the siIII haplotypes, there is a surprisingly high frequency of heteroplasmic individuals [5.8 and 11.8% reported by ![]()
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In this study, we limited our analyses of activity and longevity to males. As mitochondria are maternally inherited, it is theoretically predicted that negative selection may be greater in males than in females and a stable equilibrium can be maintained. Examples of mitochondria mutations that have a greater effect in males than in females are pointed out by ![]()
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D. simulans is a perfect model system for distinguishing differential fitness of mitochondrial variation because it harbors three well-defined haplotypes. The siI haplotype differs from the siII and siIII haplotypes by 39- and 40-amino-acid substitutions, respectively. One or more of these substitutions appears to cause detectable life-history trait differences that influence the geographic subdivision of the species. Further fine tuning of the specific differences that influence fitness will be interesting. Studying specific physiological variations in flies with different haplotypes or nucleo-mitochondrial interactions is of future interest. Products involved in the electron transport chain are potentially significant, as enzymes encoded by both nuclear and mitochondrial genes support this pathway. In particular, oxygen and hydrogen peroxide production (![]()
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| ACKNOWLEDGMENTS |
|---|
We thank Wayne Johnson (Department of Physiology, University of Iowa) for lending us the "Drosophila Activity Monitoring System" (TriKinetics) and Matt Dean for general assistance. This research was supported by National Science Foundation CAREER grant DEB-9702824 to J. William O. Ballard.
Manuscript received November 5, 2002; Accepted for publication January 16, 2003.
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