- THIS ARTICLE
-
Abstract
- Full Text (PDF)
- Alert me when this article is cited
- Alert me if a correction is posted
- SERVICES
- Email this article to a friend
- Similar articles in this journal
- Similar articles in PubMed
- Alert me to new issues of the journal
- Download to citation manager
- Reprints & Permissions
- CITING ARTICLES
- Citing Articles via HighWire
- Citing Articles via Google Scholar
- GOOGLE SCHOLAR
- Articles by Shikazono, N.
- Articles by Tanaka, A.
- Search for Related Content
- PUBMED
- PubMed Citation
- Articles by Shikazono, N.
- Articles by Tanaka, A.
Mutation Rate and Novel tt Mutants of Arabidopsis thaliana Induced by Carbon Ions
Naoya Shikazonoa, Yukihiko Yokotaa, Satoshi Kitamuraa, Chihiro Suzukia, Hiroshi Watanabea, Shigemitsu Tano2,a, and Atsushi Tanakaaa Department of Ion Beam Applied Biology, Japan Atomic Energy Research Institute, Takasaki, Gunma 370-1292, Japan
Corresponding author: Naoya Shikazono, Japan Atomic Energy Research Institute, Watanuki-machi 1233, Takasaki, Gunma 370-1292, Japan., naoya{at}taka.jaeri.go.jp (E-mail)
Communicating editor: V. SUDARESAN
| ABSTRACT |
|---|
Irradiation of Arabidopsis thaliana by carbon ions was carried out to investigate the mutational effect of ion particles in higher plants. Frequencies of embryonic lethals and chlorophyll-deficient mutants were found to be significantly higher after carbon-ion irradiation than after electron irradiation (11-fold and 7.8-fold per unit dose, respectively). To estimate the mutation rate of carbon ions, mutants with no pigments on leaves and stems (tt) and no trichomes on leaves (gl) were isolated at the M2 generation and subjected to analysis. Averaged segregation rate of the backcrossed mutants was 0.25, which suggested that large deletions reducing the viability of the gametophytes were not transmitted, if generated, in most cases. During the isolation of mutants, two new classes of flavonoid mutants (tt18, tt19) were isolated from carbon-ion-mutagenized M2 plants. From PCR and sequence analysis, two of the three tt18 mutant alleles were found to have a small deletion within the LDOX gene and the other was revealed to contain a rearrangement. Using the segregation rates, the mutation rate of carbon ions was estimated to be 17-fold higher than that of electrons. The isolation of novel mutants and the high mutation rate suggest that ion particles can be used as a valuable mutagen for plant genetics.
MUTATION rates after low linear energy transfer (LET) radiation, such as X rays,
-rays, and fast neutrons, have been extensively studied in plants (see ![]()
![]()
![]()
![]()
![]()
![]()
![]()
![]()
The mutagenic effect of ion particle irradiation, mainly on somatic mutations, has been investigated using various plant species (![]()
100200 keV/µm. In contrast, few studies have been done on germline mutations. ![]()
For genetics and breeding, it is fundamentally important to know the germline mutation rate induced by a mutagen. ![]()
![]()
| MATERIALS AND METHODS |
|---|
Plant material:
Plants of A. thaliana ecotype Columbia were grown on metro-mix (HYPONEX, Osaka, Japan) or on rock wools (Nichiasu, Tokyo) at a temperature of 25° ± 3° in an air-conditioned greenhouse and were subirrigated at 3- or 4-day intervals with 0.03% HYPONeX (HYPONEX). Seeds of the mutants used for the complementation test were provided from the Nottingham Arabidopsis Stock Center (stock nos. N64, N65, N66, N84, N85, N86, N87, N88, N89).
Irradiation:
Irradiation of dry seeds was carried out as previously described (![]()
Embryo test:
A total of 600 M1 plants were subjected to analysis for each mutagen treatment. Frequencies of embryonic lethals and of chlorophyll-deficient mutants were scored as previously described (![]()
![]()
![]()
Isolation of tt and gl mutants:
Irradiated M1 seeds were sown and selfed to obtain M2 seeds. M2 seeds from 100 M1 lines were pooled, and 400500 seeds from each pool were sown and screened for mutants. A total of 262 M1 pools for carbon ions and 96 M1 pools for electrons were screened in the present study. tt and gl mutants were identified at the M2 population, which showed a lack of purple pigmentation (anthocyanins) on leaves and stems and lacked trichomes on leaves, respectively. For the complementation tests, gl mutant lines were crossed with gl1-1, gl2-1, gl3-1, and ttg1-1 mutants (![]()
![]()
![]()
DNA extraction and molecular analysis:
The genomic DNA was extracted from the M3 mutants following the procedure described by ![]()
![]()
| RESULTS |
|---|
Electrons used in the present study have a LET of 0.2 keV/µm. Since this value is the same as the LET of
-rays, biological effects of electrons could be regarded as equivalent to those of
-rays. The RBE of carbon-ion exposures against electron exposures on the survival of Arabidopsis is approximately five (![]()
![]()
Embryonic lethals and chlorophyll mutants:
To study the mutational effect of carbon ions, we first looked at the frequency of embryonic lethals and of chlorophyll-deficient mutants in M1 siliques (Müller's embryo test; Table 1). Embryonic lethals and chlorophyll mutants were found even without irradiation, although the frequencies were low (both <1%). The induced frequencies of embryonic lethals and chlorophyll-deficient mutants after irradiation were estimated by subtracting the percentage of unirradiated samples and were found to be 6.0 and 8.4% for carbon ions of 150 Gy and 2.6 and 5.4% for electrons of 750 Gy, respectively. That is, per unit dose, the frequencies of embryonic lethals and chlorophyll-deficient mutants induced by carbon ions were 11-fold and 7.8-fold higher, respectively, than those induced by electrons.
|
tt18 and tt19 mutants:
A total of 62 tt mutants and 26 gl mutants were isolated after carbon-ion irradiation (see Table 4). From the complementation test, one line of tt3, seven lines of tt4, two lines of tt5, three lines of tt6, five lines of previously unidentified tt mutants, six lines of gl1, one line of gl2, and four lines of ttg1 were identified. On the other hand, 4 tt mutants and 7 gl mutants were isolated after electron irradiation. One line each of tt3 and tt4 and three lines of gl2 were identified. However, five carbon-ion-induced tt mutant lines in the present study were found to complement all of the tt3, tt4, tt5, tt6, and tt7 mutants, which indicated that mutations had occurred in other loci. These five mutant lines were crossed to each other and sorted into two complementation groups. Each of the two loci was named tt18 and tt19.
|
|
|
The seeds of the three tt18 mutants were yellowish-brown and the tt18 locus was mapped at 1.9 cM (±1.0, standard error) from the AG marker (63.2 cM) on chromosome 4. It is known that LDOX is required for converting flavan-3,4-diols to 3-OH-anthocyanidins, which is one of the enzymatic steps involved in the anthocyanin biosynthetic pathway (![]()
![]()
![]()
![]()
![]()
|
Two tt19 mutants were also isolated. These showed a phenotype of no or very reduced level of pigmentation on leaves and stems. The seeds of tt19 have a brown-yellowish color that is different from brown-seeded wild type. The TT19 locus was mapped at 1.6 cM (±1.0, standard error) from TT4 (29.5 cM) on chromosome 5. Although TT4 and also TT7 are located close to the map position of TT19, both tt4 and tt7 complemented tt19, indicating that neither was allelic to TT19. The flavonol synthase 1(FLS1) gene, which encodes an enzyme known to catalyze the conversion of dihydroflavonols to flavonols, also maps close to the TT19 locus (![]()
![]()
![]()
Segregation rates:
To convert the observed mutant frequencies into mutation rates, the segregation rate had to be known. Therefore, we surveyed the segregation rate of the mutants in the F2 population, which derived from the cross between parental Columbia plants and the radiation-induced M3 plants. The average segregation rates were found to be 0.250 (±0.008, standard error) and 0.256 (±0.012, standard error) for carbon-ion-induced and electron-induced mutants, respectively (Table 3).
Mutation rates:
Due to the finding of tt18 and tt19 mutants, the number of loci responsible for the tt phenotype was considered to be 7. Recently, ![]()
| DISCUSSION |
|---|
Mutagenic effect of carbon ions:
It was demonstrated from the present study that the frequencies of embryonic lethals and chlorophyll-deficient mutants induced by carbon ions were 11-fold and 7.8-fold higher, respectively, than those induced by electrons (Table 1) and that the mutation rate per Gray of carbon ions (1.9 x 10-6/Gy) was 17-fold higher than that of electrons (Table 4). These values are comparable with the RBEs (1235) estimated on somatic mutation in Arabidopsis after ion particle irradiation with similar LETs (74230 keV/µm; ![]()
![]()
![]()
500-fold higher than that of electrons. The high frequency of embryonic lethals and chlorophyll mutants and the high mutation rate after carbon-ion irradiation indicate that damage produced by a single carbon ion is more mutagenic than that produced by 500 tracks of electrons. Since all loci, except tt7 and gl3, were found to be mutated by carbon-ion irradiation, it is likely that carbon ions could randomly mutate the genome (Table 4).
The mutation rate of electrons appeared to be approximately threefold lower than that of X rays (![]()
![]()
![]()
![]()
67 (![]()
![]()
![]()
0.20 x 10-3 mutants/locus under an experimental condition of 10 mM for 24 hr. Our study showed that carbon ions had a frequency of 0.08 x 10-3 mutants/locus. Thus, in Arabidopsis, carbon ions at a dose of 150 Gy seem to be severalfold less mutagenic than treatment with 10 mM EMS for 24 hr. Similarly, regarding the frequency of embryonic lethals, a 150 Gy of carbon-ion irradiation seems to be three times less mutagenic than a treatment of 8.3 mM EMS for 24 hr (![]()
It is noteworthy that the high mutation rate by carbon-ion irradiation was observed at a relatively low dose (150 Gy) at which virtually all plants survive. This characteristic of ion particle mutagenesis is quite useful from the viewpoint of plant genetics and breeding.
Segregation rate of carbon-ion-induced mutants:
![]()
![]()
-ray-irradiated haploid pollens to diploid or tetraploid multimarker lines of Arabidopsis, that 73% of the deletions were not transmitted to the diploid progeny. They concluded that large deletions could be rescued only in triploid progeny. ![]()
-rays had a deletion that spanned at least 2 cM. This deletion was transmitted to the progeny at a reduced frequency through only the male and was not transferred through the female gametophytes. ![]()
Considering the fact that the average segregation rate is around the expected Mendelian value (0.25), one may speculate that the size of deletions induced by carbon ions is relatively small under the present experimental conditions or that large deletions induced at M1 were infrequently transmitted through either or both gametophytes. In the latter case, those deletions could have rarely become homozygous in the progeny and thus evaded identification under our screening conditions. Consistent with this interpretation, we have not yet found large deletions but found two inversions, one reciprocal translocation (![]()
![]()
Novel mutations induced by carbon ions:
A collection of mutants of the flavonoid pathway have been identified in Arabidopsis and studies of these mutants have led to a detailed understanding of the enzymology, metabolic regulation, and physiological functions of the pathway (![]()
![]()
In the present study, three tt18 mutants, which complemented all the previously identified tt mutants that lack or have little pigment on leaves and stems, were isolated from the carbon-ion-mutagenized M2. Each of these mutants was found to have a mutation at the LDOX gene (Fig 1 and Table 2). Therefore, we concluded that disruption of the functional LDOX protein is responsible for the observed phenotype in these tt18 mutants. LDOX converts flavan-3,4-diols to 3-OH-anthocyanidins and is one of the important enzymes required for constructing pigments (anthocyanin derivatives) from the precursor phenylalanine (![]()
![]()
In addition to tt18 and tt19, the induction of additional novel mutations by ion particles has been reported in plants, such as ast mutation in Arabidopsis, which shows spotted anthocyanin pigmentation in testa (![]()
![]()
![]()
![]()
![]()
| FOOTNOTES |
|---|
2 Present address: Matsudo, Chiba 270-0035, Japan. ![]()
| ACKNOWLEDGMENTS |
|---|
We thank B. Winkel-Shirley for her valuable comments on the manuscript and also for providing the names of tt alleles, and M. D. Marks for providing the names of gl alleles. We also thank A. Sakamoto and T. Hirose and Y. Hase for helpful discussions.
Manuscript received October 18, 2001; Accepted for publication December 24, 2002.
| LITERATURE CITED |
|---|
BLAKELY, E. A. and A. KRONENBERG, 1998 Heavy-ion radiobiology: new approaches to delineate mechanisms underlying enhanced biological effectiveness. Radiat. Res. 150(Suppl.):S126-S146.[Medline]
BRUGGEMANN, E., K. HANDWERGER, C. ESSEX, and G. STORZ, 1996 Analysis of fast neutron-generated mutants at the Arabidopsis thaliana HY4 locus. Plant J. 10:755-760.[Medline]
DELLAERT, L. M. W., 1980a Dose response curves after irradiation of Arabidopsis seeds: a possible explanation for the "saturation" in mutant frequency at high radiation doses. Environ. Exp. Bot. 20:309-323.
DELLAERT, L. M. W., 1980b Segregation frequencies of radiation-induced viable mutants in Arabidopsis thaliana (L.) Heynh. Theor. Appl. Genet. 57:137-143.
FUJII, T., M. IKENAGA, and J. T. LYMAN, 1966 Radiation effects on Arabidopsis thaliana II. Killing and mutagenic efficiencies of heavy ionizing particles. Radiat. Bot. 6:297-306.
FUJII, T., M. IKENAGA, and J. T. LYMAN, 1967 Killing and mutagenic efficiencies of heavy ionizing particles in Arabidopsis thaliana.. Nature 213:175-176.[Medline]
GAUL, H., 1957 Der verschiedenen bezugssysteme der mutationschaufigkeit bei pflanzen angwendet auf dosis-effectkurven. Z. Pflanzenzucht 38:63-76.
GOODHEAD, D. T., 1995 Molecular and cell models of biological effects of heavy ion radiation. Radiat. Environ. Biophys. 34:67-72.[Medline]
HAGEN, U., 1994 Mechanisms of induction and repair of DNA double-strand breaks by ionizing radiation: some contradictions. Radiat. Environ. Biophys. 33:45-61.[Medline]
HAMADA, K., M. INOUE, A. TANAKA, and H. WATANABE, 1999 Potato virus Y-resistant mutation induced by the combination treatment of ion beam exposure and anther culture in Nicotiana tabacum L. Plant Biotech. 16:285-289.
HASE, Y., A. TANAKA, T. BABA, and H. WATANABE, 2000 FRL1 is required for petal and sepal development in Arabidopsis.. Plant J. 24:21-32.[Medline]
HIRONO, Y., H. H. SMITH, J. T. LYMAN, K. H. THOMPSON, and J. W. BAUM, 1970 Relative biological effectiveness of heavy ions in producing mutations, tumors, and growth inhibition in the crucifer plant, Arabidopsis. Radiat. Res. 44:204-223.[Medline]
JOHNSON, C. S., B. KOLEVSKI, and D. R. SMITH, 2002 TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. Plant Cell 14:1359-1375.
KONIECZNY, A. and F. M. AUSUBEL, 1993 A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J. 4:403-410.[Medline]
KOORNNEEF, M., L. W. M. DELLAERT, and J. H. VAN DER VEEN, 1982 EMS- and radiation-induced mutation frequencies at individual loci in Arabidopsis thaliana (L.) Heynh. Mutat. Res. 93:109-123.[Medline]
KRAFT, G., M. KRAMER, and M. SCHOLZ, 1992 LET, track structure and models. Radiat. Environ. Biophys. 31:161-180.[Medline]
LIU, Y.-G., N. MITSUKAWA, T. OOSUMI, and R. F. WHITTIER, 1995 Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8:457-463.[Medline]
MEI, M., H. DENG, Y. LU, C. ZHUANG, and Z. LIU et al., 1994 Mutagenic effects of heavy ion radiation in plants. Adv. Space Res. 10:363-372.
MESKEN, M. and J. H. VAN DER VEEN, 1968 The problem of induced sterility: a comparison between EMS and X-rays in Arabidopsis thaliana.. Euphytica 17:363-370.
MIYAO, A., M. YAMAZAKI, and H. HIROCHIKA, 1998 Systematic screening of mutants of rice by sequencing retrotransposon-insertion sites. Plant Biotech. 15:253-256.
MÜLLER, A. J., 1963 Embryonentest zum nachweiss rezessiver letalfaktoren bei Arabidopsis thaliana.. Biol. Zentralblatt 82:133-163.
NAGATOMI, S., A. TANAKA, H. KATO, H. WATANABE and S. TANO, 1995 Mutation induction on Chrysanthemum plants regenerated from in vitro cultured explants irradiated with 12C5+ ion beam. Vol. 5, pp. 5052. TIARA Annual Report, Takasaki, Japan.
NIKJOO, H., S. UEHARA, W. E. WILSON, M. HOSHI, and D. T. GOODHEAD, 1998 Track structure in radiation biology: theory and applications. Int. J. Radiat. Biol. 73:355-364.[Medline]
PELLETIER, M. K., J. R. MURRELL, and B. W. SHIRLEY, 1997 Characterization of flavonol synthase and leucoanthocyanidin dioxygenase genes in Arabidopsis. Further evidence for differential regulation of "early" and "late" genes. Plant Physiol. 113:1437-1445.[Abstract]
PELLETIER, M. K., I. E. BURBULIS, and B. W. SHIRLEY, 1999 Disruption of specific flavonoid genes enhances the accumulation of flavonoid enzymes and end-products in Arabidopsis seedlings. Plant Mol. Biol. 40:45-54.[Medline]
SANGER, F., S. NICKLEN, and A. R. COULSON, 1977 DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
SHIKAZONO, N., Y. YOKOTA, A. TANAKA, H. WATANABE, and S. TANO, 1998 Molecular analysis of carbon ion-induced mutations in Arabidopsis thaliana.. Genes Genet. Syst. 73:173-179.[Medline]
SHIKAZONO, N., A. TANAKA, H. WATANABE, and S. TANO, 2001 Rearrangements of the DNA in carbon ion-induced mutants of Arabidopsis thaliana.. Genetics 157:379-387.
SHIRLEY, B. W., W. L. KUBASEK, G. STORZ, E. BRUGGEMANN, and M. KOORNNEEF et al., 1995 Analysis of Arabidopsis mutants deficient in flavonoid biosynthesis. Plant J. 8:659-671.[Medline]
SIEBERT, P. D., A. CHENCHIK, D. E. KELLOGG, K. A. LUKYANOV, and S. A. LUKYANOV, 1995 An improved PCR method for walking in uncloned genomic DNA. Nucleic Acids Res. 23:1087-1088.
SMITH, H. H., 1972 Comparative genetic effects of different physical mutagens in higher plants, pp. 7593 in Induced Mutations and Plant Improvement. International Atomic Energy Agency, Vienna.
TANAKA, A., N. SHIKAZONO, Y. YOKOTA, H. WATANABE, and S. TANO, 1997a Effects of heavy ions on the germination and survival of Arabidopsis thaliana.. Int. J. Radiat. Biol. 72:121-127.[Medline]
TANAKA, A., S. TANO, T. CHANTES, Y. YOKOTA, and N. SHIKAZONO et al., 1997b A new Arabidopsis mutant induced by ion beams affects flavonoid synthesis with spotted pigmentation in testa. Genes Genet. Syst. 72:141-148.[Medline]
TANAKA, A., A. SAKAMOTO, Y. ISHIGAKI, O. NIKAIDO, and G. SUN et al., 2002 An ultraviolet-B-resistant mutant with enhanced DNA repair in Arabidopsis. Plant Physiol. 129:64-71.
TIMOFEEV-RESOVSKII, N. V., E. K. GINTER, N. GLOTOV, and V. I. IVANOV, 1971 Genetic and somatic effects of X-rays and fast neutrons in experiments on Arabidopsis and Drosophila. Genetika 7:42-52.
TIMPTE, C., A. K. WILSON, and M. ESTELLE, 1994 The axr2-1 mutation of Arabidopsis thaliana is a gain-of-function mutation that disrupts an early step in auxin response. Genetics 138:1239-1249.[Abstract]
VIZIR, I. Y. and B. J. MULLIGAN, 1999 Genetics of gamma-irradiation-induced mutations in Arabidopsis thaliana: large chromosomal deletions can be rescued through the fertilization of diploid eggs. J. Hered. 90:412-417.
WINKEL-SHIRLEY, B., 2001 Flavonoid biosynthesis: a colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol. 126:1-9.
WISMAN, E., U. HARTMANN, M. SAGASSER, E. BAUMANN, and K. PALME et al., 1998 Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes. Proc. Natl. Acad. Sci. USA 95:12432-12437.
This article has been cited by other articles:
![]() |
K. Yonekura-Sakakibara, T. Tohge, F. Matsuda, R. Nakabayashi, H. Takayama, R. Niida, A. Watanabe-Takahashi, E. Inoue, and K. Saito Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis PLANT CELL, August 1, 2008; 20(8): 2160 - 2176. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Shikazono, C. Suzuki, S. Kitamura, H. Watanabe, S. Tano, and A. Tanaka Analysis of mutations induced by carbon ions in Arabidopsis thaliana J. Exp. Bot., February 1, 2005; 56(412): 587 - 596. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Naito, M. Kusaba, N. Shikazono, T. Takano, A. Tanaka, T. Tanisaka, and M. Nishimura Transmissible and Nontransmissible Mutations Induced by Irradiating Arabidopsis thaliana Pollen With {gamma}-Rays and Carbon Ions Genetics, February 1, 2005; 169(2): 881 - 889. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. A. Peer, A. Bandyopadhyay, J. J. Blakeslee, S. N. Makam, R. J. Chen, P. H. Masson, and A. S. Murphy Variation in Expression and Protein Localization of the PIN Family of Auxin Efflux Facilitator Proteins in Flavonoid Mutants with Altered Auxin Transport in Arabidopsis thaliana PLANT CELL, July 1, 2004; 16(7): 1898 - 1911. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. Debeaujon, N. Nesi, P. Perez, M. Devic, O. Grandjean, M. Caboche, and L. Lepiniec Proanthocyanidin-Accumulating Cells in Arabidopsis Testa: Regulation of Differentiation and Role in Seed Development PLANT CELL, November 1, 2003; 15(11): 2514 - 2531. [Abstract] [Full Text] [PDF] |
||||
- THIS ARTICLE
-
Abstract
- Full Text (PDF)
- Alert me when this article is cited
- Alert me if a correction is posted
- SERVICES
- Email this article to a friend
- Similar articles in this journal
- Similar articles in PubMed
- Alert me to new issues of the journal
- Download to citation manager
- Reprints & Permissions
- CITING ARTICLES
- Citing Articles via HighWire
- Citing Articles via Google Scholar
- GOOGLE SCHOLAR
- Articles by Shikazono, N.
- Articles by Tanaka, A.
- Search for Related Content
- PUBMED
- PubMed Citation
- Articles by Shikazono, N.
- Articles by Tanaka, A.



