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Analysis of Ras-Induced Overproliferation in Drosophila Hemocytes
H. Ashaa, Istvan Nagyc, Gabor Kovacsc, Daniel Stetsonb, Istvan Andoc, and Charles R. Dearolfaa Department of Pediatrics, Massachusetts General Hospital, Boston, Massachusetts 02114
b Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114
c Institute of Genetics, Biological Research Center of the Hungarian Academy of Sciences, H-6701, Szeged, Hungary
Corresponding author: Charles R. Dearolf, Massachusetts General Hospital, 55 Fruit St., Boston, MA 02114., cdearolf{at}partners.org (E-mail)
Communicating editor: K. V. ANDERSON
| ABSTRACT |
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We use the Drosophila melanogaster larval hematopoietic system as an in vivo model for the genetic and functional genomic analysis of oncogenic cell overproliferation. Ras regulates cell proliferation and differentiation in multicellular eukaryotes. To further elucidate the role of activated Ras in cell overproliferation, we generated a collagen promoter-Gal4 strain to overexpress RasV12 in Drosophila hemocytes. Activated Ras causes a dramatic increase in the number of circulating larval hemocytes (blood cells), which is caused by cellular overproliferation. This phenotype is mediated by the Raf/MAPK pathway. The mutant hemocytes retain the ability to phagocytose bacteria as well as to differentiate into lamellocytes. Microarray analysis of hemocytes overexpressing RasV12 vs. Ras+ identified 279 transcripts that are differentially expressed threefold or more in hemocytes expressing activated Ras. This work demonstrates that it will be feasible to combine genetic and functional genomic approaches in the Drosophila hematopoietic system to systematically identify oncogene-specific downstream targets.
THE ras genes encode highly conserved GTP-binding proteins that regulate cell growth, proliferation, and differentiation in almost all multicellular eukaryotes (reviewed in ![]()
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Much of our understanding of Ras-mediated signaling comes from a combination of biochemical experiments conducted in mammalian tissue culture cells and genetic screens conducted in Drosophila and Caenorhabditis elegans (reviewed in ![]()
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The most intensively studied Ras-mediated signaling pathway in Drosophila has been the one that leads to the specification of the R7 photoreceptor in the developing ommatidial clusters of the compound eye (![]()
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As an alternative, the Drosophila hematopoietic system can be utilized to study the proliferative effects of Ras and other oncogenes. In contrast to imaginal disc cells, Drosophila hemocytes appear to be capable of sustained cell proliferation, as a number of mutations can lead to the increased numbers of circulating larval hemocytes (reviewed in ![]()
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- The plasmatocytes constitute
95% or more of hemocytes and resemble cells of the vertebrate myeloid lineage. They contribute to host defense by engulfing microorganisms and are important during development for the phagocytosis of apoptotic cells. - Lamellocytes are larger cells that participate in encapsulating larger foreign invaders. They normally comprise
15% of hemocytes, but increase in number when induced by parasites or by abnormally developing tissues in the body cavity. - Finally, the crystal cells are characterized by the presence of crystalline inclusions believed to contain prophenoloxidase (
RIZKI et al. 1980 ,
RIZKI et al. 1985 ). When activated and released, the phenol oxidase acitivity causes the melanization of the encapsulated targets.
Here we show that overexpression of activated Ras in Drosophila hemocytes results in sustained cell proliferation in a manner analogous to that observed in human leukemias. We also carry out a microarray analysis to identify changes in gene expression that result from increasing Ras activity in hemocytes. This work demonstrates the utility of the Drosophila hematopoietic system as a model for the genetic and functional genomic study of oncogenic cell overproliferation.
| MATERIALS AND METHODS |
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Generation of transgenic flies:
We generated flies that carry a 2.7-kb regulatory region located between the adjacent collagen type IV genes Cg25C and viking (![]()
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Genetic crosses and phenotypic analyses:
Flies were cultured on a standard medium containing corn meal, molasses, yeast, agar, and supplemented with Tegosept. When a low density of growth was desired, eggs (3060) were collected from six pairs of parents for 4 hr in a bottle containing 25 ml of food and cultured at 25°. Under normal conditions at least 100 eggs were cultured in each bottle. To overexpress constructs in hemocytes, transgenic flies carrying the target genes under the control of GAL4 responsive elements (UAS; ![]()
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Immunohistochemistry:
The production and specificity of monoclonal antibodies to the different hemocyte subsets of Drosophila will be described elsewhere (E. KURUCZ, P. VILMOS, I. NAGY, Y. CARTON, I. OCSOVSZKI, D. HULTMARK, E. GATEFF and I. ANDO, unpublished results). H2, the pan-hemocyte antibody, recognizes all hemocytes. Antibodies P1 and L1 recognize plasmatocytes and lamellocytes, respectively. Requests for antibodies should be addressed to I. Ando. The rabbit antiphosphohistone H3 antibody was obtained from Upstate Biotechnology (Lake Placid, NY).
Wandering third instar larvae of the appropriate genotype were carefully pierced by a sharp tungsten wire and the hemolymph was collected in a drop of PBS on a glass slide. The hemocytes were incubated for 30 min in a humidified chamber to allow them to adhere to the glass slide. The buffer was removed and the cells fixed for 6 min in acetone. The cells were briefly air dried and incubated with 2% BSA in PBS for 30 min, followed by incubation overnight with the monoclonal antibody (1:10 dilution) or the phosH3 antibody (5 µg/ml). After three washes with PBS, the cells were incubated for 2 hr at room temperature with a 1:150 dilution of either Cy3-conjugated goat anti-mouse secondary antibody (Jackson Immunoresearch Labs, West Grove, PA) or FITC-conjugated goat anti-rabbit antibody (Sigma, St. Louis). After three washes in PBS, the slides were mounted in 90% glycerol in PBS. The experiment with the phosH3 staining was repeated more than three times and a total of 564 Ras-act hemocytes and 708 wild-type control hemocytes were counted to determine the number of phosH3-staining cells.
Functional assays:
Hemocytes were tested for their ability to phagocytose in an in vitro assay. Hemocytes were seeded in 25 µl of Schneider medium on the spots of multiwell microscopic slides (SM-011, Hendley-Essex, England) and 2 µl of a 10% FITC-labeled Escherichia coli suspension were added immediately. Bacteria were added in saturating amounts, so that all the hemocytes capable of phagocytosis took up bacteria. The slides were incubated for 30 min in a humidified chamber at room temperature. After incubation, 2 µl PI solution (Sigma) was added to quench the fluorescence of nonphagocytosed bacteria and the slides were covered with a coverslip. The number of cells showing fluorescence as well as the number of phagocytosed bacteria per cell were counted. In each experiment 500 hemocytes were analyzed. In some experiments the phagocytic capacity of the cells was correlated with their immunological phenotype by using streptavidin-Cy3 (Amersham Pharmacia Biotech) in combination with biotinylated L1 and/or P1 antibodies.
We tested for increased lamellocyte differentiation induced by the parasitic wasp Leptopilina boulardi, strain G486 (![]()
Injection of hemocytes into adult flies:
We collected the hemolymph from third instar larvae in ice-cold Drosophila Ringer solution and determined the cell concentration in a Bürker chamber. Wild-type, adult virgin females were anesthetized with diethyl-ether. Cell suspensions with the appropriate hemocyte concentrations or control buffer were injected into the abdomen of adult flies using a thin glass needle. The flies were transferred to fresh food, and the number of surviving flies was determined daily. For each genotype, the experiment was repeated at least three times and a total of 50139 wild-type adult flies were injected with hemocytes. In each experiment, at least 50 adult flies were injected with the control buffer. To retrieve the hemocytes from the injected adults, the flies were anesthetized and perfused with ice-cold Drosophila Ringer medium. Cells were collected on a glass slide and stained as described above.
Analysis of mRNA expression using oligonucleotide microarrays:
Drosophila larvae carrying either UAS-Ras1V12/CgGAL4 or UAS-Ras1wt/CgGAL4 were raised at 25°. The larval hemolymph from 80 larvae for those expressing RasV12(Ras-act) and from nearly 700 larvae for those expressing Raswt(Ras-wt) was carefully collected in PBS and the cells spun down and stored at -70°. Because wild-type larvae contain relatively small numbers of hemocytes, it was not possible to extract sufficient quantities of RNA for microarray analysis. Total RNA (15 µg) was extracted from the larval hemocytes using the Rneasy mini kit (QIAGEN, Chatsworth, CA). Gene expression analysis was performed using the Affymetrix Drosophila GeneChip, according to the laboratory methods described in the Genechip Expression Analysis Technical Manual (Affymetrix, 2001). Briefly, cDNA was synthesized from poly(A)+ RNA and cRNA was labeled with biotin during its synthesis using the BioArray high-yield transcript-labeling kit (Enzo). Fifteen micrograms of labeled, fragmented cRNA was hybridized to each array. The arrays were washed and scanned according to the manufacturer's protocol. For each genotype, three independent RNA samples were used and hybridized to microarrays. The Ras-act microarrays were then compared to the Ras-wt microarrays, giving a total of nine comparisons.
GeneChip.DAT files were analyzed using the Affymetrix MAS 5.0 software that includes the statistical algorithms for GeneChip expression data analysis. The image files are scanned using the Affymetrix GeneChip software and then scaled to the same intensity value before they are compared. Each transcript is represented by a probe set on the Drosophila GeneChip. Each probe set has 14 pairs of perfect match (PM) and mismatch (MM) oligonucleotides. The expression level for each gene is determined by calculating the average of differences in hybridization intensities between the PM and MM oligos. The expression profile of genes in Ras-act hemocytes was compared to that of Ras-wt hemocytes, which was taken as the reference. Three comparisons out of nine were excluded from the analysis due to high noise, following the Affymetrix recommendations. Fold change for each transcript was calculated using the Affymetrix MAS 5.0 software and is represented by the average signal log ratio (SLR is the log to the base 2 value of the fold change). Only those genes that are expressed threefold (SLR = 1.6) or more in Ras-act compared to those in Ras-wt are included in Table 2. A more detailed analysis is presented in Table S1 of the supplementary data at http://www.genetics.org/supplemental/, which includes all genes that are increased in Ras-act compared to those in Ras-wt (SLR of 0.05 or more), along with the P values for "Detection" of each gene and "Change" of expression of each gene in the six comparisons. The genes that are decreased in Ras-act compared to those in Ras-wt are shown in Table S2 of the supplementary data (http://www.genetics.org/supplemental/) along with the corresponding P values. The average SLR values and the corresponding standard deviation values are also included in the supplementary data.
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| RESULTS |
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Identification of a hemocyte promoter:
Our first goal was to identify a promoter that would enable us to preferentially express genes in the hemocytes of Drosophila. We previously showed that a DNA regulatory region located between two adjacent collagen type IV genes on the second chromosome, Cg25C and viking, can drive lacZ expression specifically in embryonic hemocytes (![]()
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To verify the effectiveness of the CgGal4 line, we used it to overexpress a cDNA encoding a hyperactive form of the Drosophila Jak kinase, hopscotch (hop). The gain-of-function mutation hopTumL has previously been shown to cause an overproliferation of larval hemocytes (![]()
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Activated Ras causes an overproliferation of hemocytes:
Ras has been implicated in regulating cell proliferation and differentiation in many organisms. To examine the effects of increasing Ras activity in hemocytes, we expressed an activated form of Ras, RasV12, using the CgGAL4 line. Late third instar larvae carrying both the UAS-RasV12 and the CgGAL4 transgenes (hereafter referred to as Ras-act) display a dramatic 40-fold increase in the number of hemocytes (Fig 2C and Fig 4). These cells express H2, an antigen that is expressed by all hemocytes (Fig 2D and Fig E). These cells morphologically resemble plasmatocytes, although they do not stain with the plasmatocyte-specific antigen P1 (data not shown). Under normal culture conditions at 25°, 99% of these animals die as early pupae. However, 33% of these larvae survive to adults when larvae are cultured at very low densities (see MATERIALS AND METHODS). Consistent with earlier data, (![]()
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We next examined whether the large increase in Ras-act larval hemocyte numbers is due to an increase in the proliferation of hemocytes or to a block in cell death. We obtained several lines of evidence to suggest that the mutant cells do indeed overproliferate. First, we cultured the Ras-act hemocytes in the abdomen of wild-type adult flies. Previous studies have shown that cells from tumorous lymph glands can be serially passaged in the abdomen of adult flies (![]()
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Second, we stained circulating larval hemocytes with anti-phosH3, a marker that stains chromosomes in cells undergoing mitosis. In a population of proliferating cells, only a small proportion of cells undergoes mitosis and stains with phosH3 at any given time (![]()
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Third, the cyclin-dependent kinase inhibitor, p21, has previously been shown to block the entry of cells into S-phase in Drosophila (![]()
Fourth, the expression of the caspase inhibitor p35 in hemocytes does not cause an appreciable increase in hemocyte number. p35 has previously been shown to block apoptotic cell death in Drosophila (![]()
Functional tests for RasV12-expressing hemocytes:
We next determined whether the Ras-act hemocytes were capable of performing any of the functions associated with wild-type hemocytes, including the phagocytosis of bacteria and the accumulation of lamellocytes in response to an immune challenge. We performed an in vitro assay for phagocytosis, in which 500 hemocytes of each genotype were examined for their ability to engulf FITC-labeled E. coli. The control OreR plasmatocytes engulfed an average of 10 bacteria/cell, while the Ras-act counterparts engulfed an average of 5 bacteria/cell. Therefore, the Ras-act hemocytes are capable of phagocytosing bacteria, but are slightly less proficient than wild-type hemocytes.
We also observe cells that morphologically resemble lamellocytes in the Ras-act larvae. They range in number from 1 to 3.5% and express L1, the lamellocyte-specific marker (data not shown). If wild-type larvae are immuno-challenged by L. boulardi, a parasitic wasp that lays its eggs inside the Drosophila larvae, the lamellocytes increase in number and function in encapsulating the wasp eggs (![]()
The RasV12 overproliferation phenotype is mediated by the Raf-MAPK pathway:
The proliferative effect of Ras could be mediated via the Raf-mitogen-activated protein kinase (MAPK) pathway or could involve other effectors distinct from Raf. We therefore tested the effect of overexpressing a gain-of-function allele of Drosophila Raf (DRafgof) in the larval hemocytes. The expression of DRafgof in hemocytes also results in a massive increase in hemocyte number (Fig 4), similar to that seen with the expression of RasV12 (Fig 4). This indicates that Raf activation alone is sufficient to induce hemocyte proliferation.
We also looked at the effects of reducing the function of genes located downstream of Ras in this pathway. Ras-act larvae that were hemizygous for a DRaf loss-of-function allele (DRaf1129) had fewer hemocytes than wild-type larvae did (data not shown). This is consistent with previous observations that a complete loss of Raf function causes an almost total loss of hemocytes, most likely due to a decrease in cell viability (![]()
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Activated Ras has been shown to interact directly with other effectors in addition to Raf, including PI3-kinase and Ral.GDS (![]()
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Microarray analysis of Ras-expressing hemocytes:
To identify those genes whose expression correlates with oncogenic Ras-induced cell overproliferation, we examined expression profiles of genes using oligonucleotide microarrays. There is a 10-fold increase in the number of Ras-act hemocytes (192 x 103/µl) compared with that of Ras-wt hemocytes (18 x 103/µl). Therefore, a comparison of the patterns of gene expression between these two populations of hemocytes is likely to identify those genes whose expression is altered by increasing Ras activity.
Using Affymetrix Drosophila oligonucleotide microarrays, we compared the expression profiles of >13,000 genes between the two populations of hemocytes. Expression of 6123 transcripts was detected as present in Ras-act and 4644 transcripts as present in Ras-wt hemocytes. In a comparative analysis of Ras-act to Ras-wt hemocytes (see MATERIALS AND METHODS) there is at least a threefold increase in the expression of 279 genes (Table 2 and supplementary information at http://www.genetics.org/supplemental/). The expression of 76 genes is decreased threefold or more in Ras-act compared with that in Ras-wt. These genes are not discussed further in this article, but are included as supplementary information at http://www.genetics.org/supplemental/.
Among the genes that are most strongly induced in Ras-act hemocytes are CG16731, a putative prophenoloxidase activator (128-fold), string (27-fold), and Cks (25-fold; Table 2). Crystal cells contain the enzymes and substrates required for melanization (![]()
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Among the 279 genes that had a >3-fold increase in expression in Ras-act, 17 genes have functions related to cell cycle regulation and 16 genes function in DNA replication or mitosis (Table 2). The increased expression of some of these genes may be directly related to the increased proliferative capacity of Ras-act hemocytes. Interestingly, the genes upregulated include both positive and negative regulators of cell cycle progression. Among the positive regulators that were induced are string (27-fold), cyclin E (6.8-fold), cdc2 (7.8-fold), and cyclin B3 (4.7-fold). Negative regulators of cell proliferation upregulated include dacapo (4-fold) and wee1 (5-fold). Genes induced include those that regulate the G1/S transition (e.g., cyclin E, dacapo) as well as those that regulate G2/M (string, wee1, cyclin B3). Expression of cyclin B (2-fold), cyclin A (2.9-fold), cdk2 (1.9-fold), and cdk4/6 (2.4-fold) is also increased (supplementary information at http://www.genetics.org/supplemental/). Expression of cyclin D, a cyclin that has been shown to promote growth in some situations (![]()
Among the genes known to regulate hemocyte fates in Drosophila, expression of lozenge (lz) is increased 5.7-fold in Ras-act hemocytes (Table 3). lz expression is necessary for crystal cell fate specification and lz mutants lack crystal cells (![]()
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| DISCUSSION |
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Ras has been well studied as a mammalian oncogene. Mutations that activate Ras represent one of the steps in the formation of many types of human cancers (![]()
Previous studies by others have shown that activated Ras can induce growth and cell proliferation in Drosophila (![]()
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Ras can induce an overproliferation of functional yet abnormal hemocytes:
We have shown that the overexpression of activated Ras in Drosophila hemocytes results in a leukemia-like overproliferation. These circulating hemocytes appear to be normal by several functional criteria. The majority of the overproliferating hemocytes resemble wild-type plasmatocytes in their morphology and are capable of phagocytosis. Moreover, lamellocytes accumulate when Ras-act larvae are parasitized in the wasp assay. The Ras-act hemocytes also express several markers associated with normal plasmatocytes, including peroxidasin and croquemort.
At the same time, the mutant hemocytes differ from their wild-type counterparts in their expression patterns of known plasmatocyte markers. The mutant hemocytes do not express the epitope, recognized by the P1 monoclonal antibody that is found on all mature plasmatocytes (E. KURUCZ, P. VILMOS, I. NAGY, Y. CARTON, I. OCSOVSZKI, D. HULTMARK, E. GATEFF and I. ANDO, unpublished results). Further, microarray analysis demonstrated that these cells do not express gcm, a transcription factor that is expressed in normal plasmatocytes (![]()
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Our data indicate that activated Ras induces hemocyte overproliferation in Drosophila through a Raf/MAPK pathway. The Ras-induced overproliferation of hemocytes can be suppressed by mutations that reduce signaling via D-Raf or by reduced activity of the rl MAP kinase. Further, the overexpression of an activated Raf construct resulted in a large increase in the concentration of circulating hemocytes (Fig 4).
The Ras-induced overproliferation can also be suppressed by overexpression of the human cdk inhibitor p21. The Drosophila ortholog of p21, dacapo, has been shown to bind and inactivate cyclin E/cdk2 complexes (![]()
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Changes in gene expression induced by Ras:
By comparing the RNA samples from Ras-act and Ras-wt hemocytes, we have been able to assess the transcriptional changes over the entire predicted genome that result from an increase in Ras activity in a specific lineage. To our knowledge, this is the first description of a whole-genome, in vivo analysis of Ras-mediated changes in transcription. Other studies have examined the transcriptional changes resulting from an increase in Raf activity in a human breast epithelial cell line, although only a portion of the human genome was analyzed (![]()
One overall finding is that many of the genes that are upregulated in Ras-act cells include genes that function in cell cycle regulation and DNA replication. These genes include both positive and negative regulators of cell proliferation. The cyclin-dependent kinase inhibitor dacapo (which antagonizes the function of cyclin E/cdk2 complexes), as well as the wee1 kinase (which inactivates cdc2), are both induced. There is currently no known function for either gene in promoting cell cycle progression. Thus the induction of these genes may represent a negative feedback mechanism that attempts to reduce cell proliferation under conditions of excessive cell proliferation. Another possibility is that these two genes have roles in promoting cell cycle progression that are currently unknown. Our microarray data also show that regulators that promote all stages of cell cycle progression are induced, not only those that promote the G1/S transition. Our data therefore suggest that both the G1/S and G2/M cell cycle transitions may be influenced by an increase in Ras activity.
A second finding is that many of the transcriptional targets known to be induced by Ras1 in other tissues are not induced in Ras-act hemocytes. Therefore, although the RTK/Ras pathway induces the expression of phyllopod (![]()
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Finally, our data indicate that the large overproliferation of hemocytes in response to activated Ras does not lead to a general activation of the immune response. Among the 134 Drosophila immune-regulated genes induced by septic injury and fungal infection (![]()
-2M receptor like (complement binding), a trypsin-like serine protease (phenol oxidase cascade), a serpin (serine protease inhibitor), spz (antifungal response), and Tl (antifungal response). The 4 downregulated genes include Tep1 (complement like), Rel (transcription factor), Metchnikowin (antimicrobial response), and a lipase.
Concluding remarks:
Activated versions of both Ras and the Hop Jak kinase induce leukemia-like phenotypes in Drosophila larvae. Further, it is possible to isolate sufficient quantities of larval hemocytes to conduct microarray expression studies. By comparing the expression profiles from different oncogene-induced leukemia cells, coupled with mutational analysis of the newly identified targets, it should be possible to systematically characterize the critical, oncogene-specific target genes. This approach could prove beneficial to the treatment of human cancers.
| ACKNOWLEDGMENTS |
|---|
We are grateful to F. Karim for the UAS-Ras1 transgenic flies, D. Harrison for UAS-hop transgenic flies, the Indiana University Stock Center for providing fly stocks, and to Y. Carton for generously providing the wasps. We thank J. Couget, S. Meng, and T. Aldredge of the Center for Genome Research at Harvard University for help with the Affymetrix microarray analysis. We thank O. Stevaux, J. Walker, and D. Dimova for their generous help with the microarray data analysis, B. Carney and S. Conto for technical help, and K. Baksa for comments on the manuscript. We are grateful to I. Hariharan for helpful discussions and for critically evaluating the manuscript. H.A. was a recipient of an NRSA fellowship from the National Institutes of Health (NIH). Work in the Dearolf lab is supported by the NIH. The Ando lab was supported by grants from the Hungarian National Science Foundation (OTKA grants T035249 and T035074).
Manuscript received June 4, 2002; Accepted for publication October 17, 2002.
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