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The Scw1 RNA-Binding Domain Protein Regulates Septation and Cell-Wall Structure in Fission Yeast
Jim Karagiannisa, Rena Oulton1,a, and Paul G. Youngaa Department of Biology, Queen's University, Kingston, Ontario K7L-3N6, Canada
Corresponding author: Paul G. Young, Rm. 2443, Biosciences Complex, Queen's University, Kingston, ON K7L-3N6, Canada., youngpg{at}biology.queensu.ca (E-mail)
Communicating editor: P. RUSSELL
| ABSTRACT |
|---|
Loss of the nonessential RNA-binding domain protein, Scw1, increases resistance to cell-wall-degrading enzymes in fission yeast. Surprisingly, scw1 null mutations also suppress the lethality of mutations (cdc11-136, cdc7-24, cdc14-118, sid1-239, sid2-250, sid3-106, sid4-A1, and mob1-1) at all levels of the sid pathway. This pathway forms part of the septation initiation network (SIN), which regulates the onset of septum formation and ensures the proper coupling of mitosis to cytokinesis. In contrast, scw1- mutations do not suppress ts alleles of the rng genes, cdc12 or cdc15. These mutations also prevent the formation of a septum and in addition block assembly and/or function of the contractile acto-myosin ring. sid mutants exhibit a hyper-sensitivity to cell-wall-degrading enzymes that is suppressed by loss of Scw1. Furthermore, scw1--mediated rescue of sid mutants is abolished in the presence of calcofluor white, a compound that interferes with cell-wall synthesis. These data suggest that Scw1 acts in opposition to the SIN as a negative regulator of cell-wall/septum deposition. Unlike components of the SIN, Scw1 is predominantly a cytoplasmic protein and is not localized to the spindle pole body.
CYTOKINESIS requires a large network of genes that function in a highly coordinated manner (![]()
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Mutants specifically defective in each of these processes have been identified and constitute the pos, mid, and pom mutants defective in positioning of the division site (![]()
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The sid class of mutants belongs to a regulatory module (referred to as the septation initiation network, or SIN) that localizes to the spindle pole body and functions in signaling the onset of septum formation once per cell cycle. This network consists of the products of the cdc16, byr4, cdc11, cdc7, cdc14, spg1/sid3, sid1, sid2, sid4, and mob1 genes (reviewed in ![]()
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Sid4 and Cdc11 are the most upstream members of this network and are localized constitutively to the spindle pole body (SPB) throughout the cell cycle. Sid4 is required for the recruitment of all other tested SIN components (Cdc11, Byr4, Spg1, Cdc7, Sid1, Sid2, Mob1, and Cdc14) to this subcellular location, whereas Cdc11 is required for the recruitment of Spg1, Sid2, Cdc7, Mob1, and Byr4, but not Sid4. Sid4 and Cdc11 physically interact, suggesting that the Sid4-Cdc11 complex may act as a scaffold (![]()
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The Spg1 GTPase, which acts as an on/off switch for septum formation, is also constitutively localized to the SPB but is kept in an inactive guanosine diphosphate-bound state by the GTPase activating protein (GAP) activity of a complex formed between Byr4 and Cdc16 (![]()
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Here we describe the initial characterization of an RNA-binding domain protein, Scw1, whose loss results in increased resistance to cell-wall-degrading enzymes. scw1 null mutations are also able to suppress the lethality and septation defects associated with sid mutants. In this report we demonstrate that sid mutants themselves exhibit a decrease in resistance to cell-wall-degrading enzymes and, in addition, that loss of scw1 counteracts this effect. Furthermore, we show that scw1--mediated suppression of sid mutants is abolished in the presence of the cell-wall synthesis inhibitor, calcofluor white. These data suggest that scw1 acts as a negative regulator of cell-wall/septum deposition acting in opposition to the SIN.
| MATERIALS AND METHODS |
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Strains, media, and growth conditions:
All S. pombe strains used in this study (Table 1) were derived from strains 972 h- or 975 h+. Cells were grown in yeast extract medium supplemented with adenine (YEA; ![]()
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Isolation and cloning of the scw1 gene:
The scw1-1 (strong cell wall) mutation was isolated in a screen analogous to ![]()
18,000 transformants. Plasmid co-loss experiments showed that the complementing activity was due to the presence of the plasmid (p5ARES) and integrative mapping showed that the plasmid had integrated at or near the scw1 locus (indicating that it contained the scw1+ gene and not a multicopy suppressor). Recovery of the plasmid, followed by sequencing from either end of the genomic insert, comparison to Sanger Centre sequence, subcloning, and plasmid complementation, identified the scw1+ open reading frame (ORF) as SPCC16C4.07.
Disruption of the scw1 gene:
The scw1 gene was disrupted using the one-step gene disruption method (![]()
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Overexpression of the scw1 gene:
The scw1 gene was PCR amplified (forward: 5'-gga att cca tat gtt tgt ggg atc acc gag c-3'; reverse: 5'-acg cgt cga cct att tgc cat aca tta gat tat tac ccc-3') using the Expand high-fidelity PCR system (Roche, Indianapolis) and cloned into the unique NdeI and SalI sites of the pREP1, pREP41, or pREP81 vectors (![]()
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Fluorescence microscopy:
For 4',6-diamidino-2-phenylindole [DAPI; Sigma (St. Louis) D1388] and calcofluor staining (Polysciences, No. 4359) cells were grown to mid-log phase, collected by centrifugation (3000 rpm, 5 min), washed, and then fixed by adding one-tenth volume 37% formaldehyde to cells resuspended in 1x PEM (100 mM PIPES, 1 mM EGTA, and 1 mM MgSO4). Cells were incubated with rotation for 20 min, collected by centrifugation, and then washed and resuspended in 1x PEM. One microliter of cell suspension was then mixed on a microscope slide, with 1 µl of DAPI at a concentration of 1 µg/ml and 1 µl of calcofluor at a concentration of 2 µg/ml. Images were acquired using a Leitz DMRB fluorescence microscope (Leica Microsystems) and a high-performance cooled CCD camera (Cooke Sensicam) operated by Slidebook image analysis software (Intelligent Image Innovations). Methyl blue (Sigma M6900) staining was performed according to the protocol of ![]()
Scw1-GFP fusion:
The scw1 gene was PCR amplified (forward: 5'-gga att cca tat gtt tgt ggg atc acc gag c-3'; reverse: 5'-acg cgt cga cga ttt gcc ata cat tag att att acc cca ac-3') using the Expand high-fidelity PCR system (Roche) and cloned into the unique NdeI and SalI sites of the pREP41-GFP(S65T) plasmid (![]()
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Cell-wall digestion:
Cell-wall digestion experiments were performed as described in ![]()
1.0 in 50 mM sodium phosphate/50 mM sodium citrate buffer pH 5.6 containing 0.20.5 mg/ml Novozym 234 (
-glucanase; Interspex Products) or in TE buffer pH 7.5 (10 mM Tris-HCl, 1 mM EDTA) containing 0.5 mg/ml Zymolyase 20T (ß-glucanase; ICN Biomedicals). Digestion buffers contained ß-mercaptoethanol at 0.01%. The cell suspension was then incubated with constant shaking at 36° and cell lysis was monitored by measuring the optical density at 600 nm at the time points indicated in the text. In experiments using temperature-sensitive (ts) SIN mutants, cultures were grown in YEA at 25° and then transferred to 36° for 4 hr prior to suspension in the digestion buffer.
| RESULTS |
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Phenotypic characterization of the scw1-1 mutant:
The recessive scw1-1 mutation was isolated in a screen for mutants with pH-sensitive cell cycle defects (see MATERIALS AND METHODS). The mutation conferred increased cell size at division as well as an unusual, disorganized colony morphology. The phenotype was exacerbated by increased temperatures and by lowered external pHs (Fig 1A, Table 2). Logarithmically growing populations of scw1-1 mutants also displayed an abnormally high septation index, as well as a significant proportion of multiseptate cells (Fig 1B). Unlike other multiseptate mutants that display incorrectly placed septa both spatially and temporally (![]()
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Taken together, these data suggest that the fundamental defect in the scw1-1 mutant was not in the control of cell cycle progression, but rather stemmed from an inability to degrade septal material in a timely manner (i.e., cell separation). Since S. pombe grows only by extension in length at its tips this would lead to the appearance of abnormally long, or in more extreme instances (where separation was delayed past the next mitosis), to multiseptate cells.
Septal material is similar in composition to the cell wall (![]()
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- and ß-glucanases, supporting the hypothesis that the fundamental defect caused by this mutation is in altered cell-wall structure (Fig 2).
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Cloning and disruption of the scw1 gene:
The scw1 gene was cloned by functional complementation and shown to correspond to an open reading frame designated SPCC16C4.07 by the S. pombe sequencing project (see MATERIALS AND METHODS; Fig 3A). scw1 encodes a polypeptide of 561 amino acids and contains an RNA-binding domain in its C terminus (Fig 3B). RNA-binding domains (also referred to as RNA recognition motifs or ribonucleoprotein domains) are a common eukaryotic motif found in proteins with roles in the maturation, transport, stability, localization, and translation of mRNAs (![]()
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scw1 is part of a conserved family of four genes, which includes fission yeast mde7, as well as the budding yeast WHI3 and WHI4 genes (see DISCUSSION). The four proteins are most highly similar in the RNA-binding domain, but do show weaker similarity elsewhere in the proteins (Fig 3C, Table 3). Caenorhabditis elegans Mec8 also shows significant similarity to Scw1, mainly in the RNA-binding domain. In humans, Scw1 shows highest similarity to poly-pyrimidine tract binding protein. Strains carrying a disruption of the scw1 ORF (see MATERIALS AND METHODS; Fig 3A) behaved very similarly to scw1-1 point mutants under all conditions tested (Fig 1A and Fig B; Fig 2; Table 2).
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Overexpression of the scw1 gene:
Overexpression of scw1 from the strong thiamine repressible nmt1 promoter (![]()
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Logarithmically growing cells expressing scw1 from the intermediate strength nmt41 promoter were viable, but expression did result in a slower rate of growth (
60% that of wild type). Overexpression did not, however, result in septation defects or in a weakened cell wall relative to wild type (Fig 2; data not shown). Since the small percentage of cells exhibiting cell-wall/septation defects could not account for the large drop in viability seen upon strong overexpression, and since moderate overexpression resulted in a slow-growth phenotype in the absence of cell-wall/septation defects, we suggest that scw1 overexpression may have a dominant negative effect due to a general interference with mRNA metabolism. Expression of scw1 from the nmt41 promoter, as well as expression from the weakest nmt81 promoter, could suppress the colony morphology, cell length at septation, and strengthened cell-wall phenotypes of both the scw1-1 point mutant and scw1::ura4+ disruption (Fig 1 and Fig 2; Table 2; data not shown).
scw1 null mutations suppress defects in the septation initiation network:
Since scw1 loss-of-function mutants displayed defects in septation/cell separation, and since strong overexpression resulted in a proportion of cells displaying cell-wall and/or septation defects, we searched for genetic interactions between the scw1::ura4+ disruption and available septation mutants. These mutants included cdc11-136, cdc7-24, cdc14-118, sid1-239, sid2-250, sid3-106, sid4-A1, and mob1-1. These mutants fall into the class of sid mutants, which arrest with an elongated morphology, no septa, and multiple nuclei and which eventually lyse (![]()
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The strength of suppression (in terms of growth) varied, depending on which sid mutant was tested, but did not show any relationship to the location of the gene within the sid pathway. The most complete suppression was seen in scw1::ura4+ cdc11-136 and scw1::ura4+ sid1-239 double mutants, which were indistinguishable from scw1::ura4+ single mutants. The weakest suppression was observed in the scw1::ura4+ mob1-1 double mutant, which grew relatively poorly and displayed cells that were both wider and more elongated than wild type. All other scw1::ura4+ sid double mutants displayed intermediate levels of growth between these two extremes (Fig 5A, data not shown).
Importantly, the scw1::ura4+ disruption was unable to rescue the phenotypes associated with the cdc12-112 (Fig 5A), or the cdc15-140 mutations (data not shown). These mutants also arrest with an elongated morphology and no septa, but are unable to correctly form the acto-myosin ring (![]()
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To determine whether the scw1::ura4+ disruption could suppress multiple defects in the SIN we mated scw1::ura4+ mob1-1 and scw1::ura4+ sid2-250 strains. Out of 20 analyzed tetrads, 14 displayed a three-to-one segregation of colony- to non-colony-forming ability (at 25°), three tetrads displayed a two-to-two segregation of this phenotype, and the three remaining tetrads displayed a four-to-zero segregation. Microscopic inspection of the non-colony-forming spores revealed that they had germinated and formed cdc- microcolonies. Genetic analysis of the viable spores in a tetratype tetrad allowed us to infer that the genotype of the cdc- microcolonies was in fact scw1::ura4+ mob1-1 sid2-250, as expected (Fig 5B). Thus the presence of the scw1::ura4+ disruption cannot entirely bypass the requirement of the SIN.
We next constructed scw1::ura4+ cdc16-116 double mutants. At 36° cdc16-116 strains display a terminal phenotype opposite to that of sid mutants, arresting with a predominantly multiseptate phenotype (![]()
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Interestingly, since the sid2-250 mutation is epistatic to cdc16-116 (![]()
We next examined scw1::ura4+ sid double mutants with DAPI and calcofluor 5 hr after shift to restrictive conditions. Although able to form septa, it was clear that scw1::ura4+ sid double mutants displayed defects in the coupling of mitosis to cytokinesis. scw1::ura4+ cdc7-24, scw1::ura4+ mob1-1, scw1::ura4+ sid2-250, scw1::ura4+ sid3-106, scw1::ura4+ sid4-A1, and scw1::ura4+ cdc14-118 double mutants all exhibited multiseptate cells with anucleate or multinucleate compartments. scw1::ura4+ cdc11-136 and scw1::ura4+ sid1-239 double mutants, which were the most strongly suppressed in terms of growth (see above), exhibited these defects to a much lesser extent and appeared similar to scw1::ura4+ single mutants alone (Fig 5D, Table 4). These data demonstrate that the proper coupling of mitosis to cytokinesis can be defective in scw1- sid double mutants even if the lethality and septum formation defects are suppressed.
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The SIN is a regulator of cell-wall integrity:
Since scw1- mutants displayed increased resistance to cell-wall-degrading enzymes we examined the ability of sid mutants to resist degradation of their cell walls by the
-glucanase Novozym 234. We discovered that after a 4-hr incubation under restrictive conditions cdc7-24 cells exhibited a marked decrease in resistance to the enzyme relative to wild type while scw1::ura4+ cdc7-24 cells exhibited similar levels of resistance to those seen in scw1::ura4+ single mutants. Furthermore, hyper-activation of the pathway caused by loss of cdc16 led to Novozym 234 resistance even greater than that seen in scw1::ura4+ cells (Fig 6A). These data demonstrate that the SIN module has dosage-dependent effects on cell-wall integrity.
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As expected, when experiments were performed using the ß-glucanase Zymolyase 20T, we found similar interactions between the scw1::ura4+ disruption and the cdc7-24 allele (with the exception that scw1::ura4+ cdc7-24 cells displayed intermediate levels of resistance between scw1::ura4+ and cdc7-24 single mutants). cdc16-116 mutants, on the other hand, displayed a profile similar to wild type (with the exception in this case being that the mutant consistently displayed altered kinetics, i.e., increased sensitivity at earlier time points and increased resistance at later time points). In addition we found that cdc16-116 scw1::ura4+ strains displayed increased resistance over strains carrying the cdc16-116 mutation alone (Fig 6B). The differential response of the cdc16-116 mutant to two different cell-wall-degrading enzymes suggests that the changes in cell-wall structure associated with hyper-activation of the SIN involve more than simple increases in the deposition of cell-wall material. Rather it may involve more complex changes in cell-wall architecture. Similar results to those obtained with the cdc7-24 mutant were observed with the other sid mutants used in this study (data not shown).
Since methyl blue has recently been reported to be an excellent cell-wall marker (![]()
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20% of the cells had lysed. Visible ruptures in the cell wall (generally in the medial regions of the cell) and the spilling of cytoplasmic contents were also observed. This phenomenon was not noted in wild-type, scw1::ura4+, or scw1::ura4+ cdc7-24 cells (Fig 6C). This phenomenon was also not noted in unfixed cdc7-24 cells or in cdc7-24 cells fixed with formaldehyde (data not shown). Therefore, although the phenomenon is artifactual, most likely due to the harsher nature of methanol fixation, it does reveal an inherent weakness in the cell wall of cdc7-24 cells. Similar results were obtained with the other sid mutants used in this study (data not shown). Otherwise, results obtained using methyl blue were similar to those obtained using the more widely used cell-wall marker, calcofluor white (data not shown).
Taking all data together, our results suggested that the stronger cell wall conferred by the scw1::ura4+ disruption played a key role in the observed suppression of sid mutations. If this were true, then one would expect conditions that act against cell-wall integrity to negatively affect this rescue. We thus examined the growth of wild-type, scw1::ura4+, cdc7-24, and scw1::ura4+ cdc7-24 cells at 36° in the presence of 0.5 mg/ml calcofluor white. This compound (in addition to acting as a cell-wall marker) inhibits the formation of glucan and chitin microfibrils and thus interferes with cell-wall synthesis (![]()
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SIN-mediated effects on cell-wall integrity are influenced by cell cycle position:
The effects of cdc7 overexpression on septation are reduced in cells arrested at the G2/M transition (![]()
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Consistent with our previous results, hyper-activation of the SIN in exponentially growing cells resulted in increased resistance to Novozym 234. A similar effect was seen in cells arrested at the G1/S transition. Intriguingly, however, the increased resistance was partially abrogated in cells arrested predominantly in G2 (Fig 7). When analogous experiments were performed using Zymolyase 20T we noted that exponentially growing and G1-arrested cells displayed decreased resistance, but that G2 arrest partially abrogated this effect (Fig 7). These data show that the effects of SIN hyper-activation on cell-wall integrity are modulated by cell cycle position.
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Zymolyase 20T resistance assays were somewhat surprising since cdc7 loss-of-function mutants displayed a similar resistance to that demonstrated by cells overexpressing cdc7. We interpret these results to indicate that gross disturbances of Cdc7 function (either by loss or by strong overexpression) cause drastic changes in cell-wall structure, which manifest as a decrease in Zymolyase 20T resistance. This is to say that although the loss and overexpression of Cdc7 have opposing effects, the net result is a poorly structured cell wall vulnerable to attack by Zymolyase 20T.
Subcellular localization of Scw1:
Since members of the SIN localize to the spindle pole body we created a C-terminal Scw1-GFP fusion to determine its subcellular localization (see MATERIALS AND METHODS). Unlike members of the SIN, Scw1 was predominantly a cytoplasmic protein (Fig 8). Localization was not altered as a function of cell cycle position by changes in temperature or by external pH conditions (data not shown).
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| DISCUSSION |
|---|
The cell wall of S. pombe is composed mainly of polymers of 1,3-ß-glucan, 1,3-
-glucan, and
-galactomannan. It serves a wide variety of functions including protection from environmental stresses, cell adhesion during conjugation and mating, and the maintenance of cellular morphology (![]()
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In this report we show that loss of the scw1 RNA-binding domain protein also affects the cell wall as evidenced by increased resistance to both
- and ß-glucanases. The mechanism by which loss of scw1 causes these differences is unknown, but on the basis of scw1 encoding an RNA-binding domain protein, the differences most likely result from an indirect means related to the regulation of mRNAs. RNA-binding domain proteins have been shown to affect many distinct cellular pathways through their effects on mRNA maturation, transport, stability, localization, and translation (see ![]()
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The scw1 RNA-binding domain protein isolated in this study is part of a family of four genes that include S. pombe mde7, as well as S. cerevisiae WHI3 and WHI4. mde7 has not been characterized in detail, but is known to be one of nine meiosis-dependent transcripts under the control of the Mei4 forkhead transcription factor (![]()
WHI3 was isolated as a dosage-dependent regulator of cell size in the budding yeast Saccharomyces cerevisiae (![]()
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In addition to the characterization of a previously unknown protein, these results are more significant in terms of highlighting the role of cell-wall structure in the onset of septation in S. pombe. We are able to show here that both scw1, and the SIN module itself, act as regulators of cell-wall integrity. We further demonstrate that loss-of-function mutations in scw1, which counteract the cell-wall changes associated with reduced SIN activity, also allow the formation of septa. Lastly, we show that conditions that negatively regulate cell-wall integrity also abolish the ability of the scw1::ura4+ disruption to suppress sid mutations. These data suggest that scw1 normally acts in opposition to the SIN as a negative regulator of septum/cell-wall deposition and/or structure. Alternatively, loss of scw1 may bring about changes in cell-wall architecture that are more permissive for SIN-induced septum formation.
Interestingly, scw1 is one of several recently identified genes whose loss suppresses defects in the SIN. The first, zfs1, encodes a zinc-finger-containing protein, which, when deleted, reduces the restrictive temperatures of ts alleles of cdc7, cdc11, cdc14, spg1, sid1, sid2, and sid4 (mob1 was not tested; ![]()
par2
double mutants (like scw1- mutants) display a multiseptate phenotype (![]()
Whether or not zfs1, par1, or par2 act as regulators of cell-wall structure has not been tested explicitly, but loss-of-function mutants of the pab1 B subunit of PP2A have been shown to display reduced resistance to Zymolyase 100T, demonstrating that the cell wall is sensitive to PP2A activity (![]()
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The mechanism(s) by which these genes affect the SIN is unknown, but par1 and par2 have been proposed to act as negative regulators either at the level of cdc7 or at a point upstream, whereas zfs1 has been proposed to act as a negative regulator of a SIN component, an inhibitor of a SIN substrate, or in a parallel pathway whose loss is capable of compensating for reduced SIN signaling (![]()
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On the basis of genetic analysis scw1 is clearly acting at the level of septum deposition since scw1- mutations are able to suppress ts mutants at all levels of the SIN pathway and since scw1- mutations have no ability to suppress either the cdc12-112 or the cdc15-140 mutations (which cause defects in acto-myosin ring formation and/or function; ![]()
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The ability of the scw1::ura4+ disruption to suppress the mob1-1 and sid2-250 mutations singly, but not in combination, also demonstrates that the scw1::ura4+ disruption does not simply bypass the requirement of the SIN. Instead, scw1 most likely acts as a negative regulator of the network either at a point upstream of Sid2/Mob1 or possibly in a parallel pathway, which also plays a role in modulating cell-wall structure and counteracts the effects of the SIN. Interestingly, a role for cell-wall structure in regulating septation has been suggested by the cloning and characterization of the cps1 gene. cps1 encodes a 1,3-ß-glucan synthase subunit whose loss results in an inability to initiate septum formation, but does not affect normal growth (![]()
It is interesting to note that clear functional homologs of many SIN members have not been found in more complex, multicellular eukaryotes to date (![]()
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Unlike members of the SIN, loss-of-function mutants of the MEN display a late mitotic arrest. However, a cell lysis phenotype has been observed in the MEN mutant cdc15-lyt1, as well as in mutant alleles of DBF2 and TEM1 (homologs of S. pombe cdc7, sid2, and spg1, respectively; ![]()
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| FOOTNOTES |
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1 Present address: Ontario Cancer Institute, Department of Medical Biophysics, University of Toronto, Toronto, ON M5G-2C1, Canada. ![]()
| ACKNOWLEDGMENTS |
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We thank D. McCollum, M. K. Balasubramanian, and V. Simanis for strains and/or plasmids, as well as L. Taricani for constructing the pREP41-GFP (S65T) plasmid. This research was supported by the Natural Science and Engineering Council of Canada through grants to P.G.Y. J.K. was supported by the Bauman Foundation and by an Ontario Graduate Scholarship.
Manuscript received March 4, 2002; Accepted for publication June 6, 2002.
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) Wild type; (
) scw1-1; (
) scw1::ura4+; () wild type transformed with pREP41-scw1+; (
) scw1::ura4+ transformed with pREP81-scw1+.
0.5 using Gonnet PAM250 matrix) whereas regular type on a shaded background indicates a weakly conserved group (a positive score <0.5 using Gonnet PAM 250 matrix).


) cdc16-116; (
) scw1::ura4+ cdc16-116. (A) Strains were incubated as described in MATERIALS AND METHODS in the presence of 0.2 mg/ml Novozym 234 (top) or 0.5 mg/ml Novozym 234 (bottom). (B) Strains were incubated as described in MATERIALS AND METHODS in the presence of 0.5 mg/ml Zymolyase 20T. (C) Cells of the indicated genotype were grown to mid-log phase in YEA at 25°, shifted to 36° for 5 hr, fixed with methanol, and then stained with methyl blue. Arrowhead indicates cell-wall rupture. Bar, 10 µm. (D) Cells of the indicated genotype were streaked to YEA plates supplemented with 0.5 mg/ml calcofluor white and incubated for 36 hr at 36°. Bar, 100 µm.
) Wild type; (