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Ethylnitrosourea-Induced Base Pair Substitution Affects Splicing of the Mouse
E-Crystallin Encoding Gene Leading to the Expression of a Hybrid Protein and to a Cataract
Jochen Grawa,
Angelika Neuhäuser-Klaus2,a,
Jana Löstera,
Norman Klopp3,a, and
Jack Favor2,a
a GSF-National Research Center for Environment and Health, Institute of Mammalian Genetics, D-85764 Neuherberg, Germany
Corresponding author: Jochen Graw, Institute of Mammalian Genetics, D-85764 Neuherberg, Germany., graw{at}gsf.de (E-mail)
Communicating editor: C. KOZAK
| ABSTRACT |
|---|
A novel ENU-induced mutation in the mouse leading to a nuclear and cortical opacity of the eye lens (ENU418) was mapped to proximal chromosome 1 by a genome-wide mapping approach. It suggests that the cluster of
-crystallin encoding genes (Cryg) and the ßA2-crystallin encoding gene Cryba2 are excellent candidate genes. An A
G exchange in the middle of intron 1 of the Cryge gene was found as the only alteration cosegregating with the cataractous phenotype. The mutation was confirmed by the presence of a novel restriction site for ApaI in the corresponding genomic DNA fragment. The mutation represses splicing of intron 1; the additional 92 bp in the corresponding cDNA leads to a frameshift and the expression of a novel hybrid protein containing 3 amino acids of the
E-crystallin at the N terminus, but 153 novel amino acids. The CrygeENU418 protein has a calculated molecular mass of
15.6 kD and an alkaline isoelectric point (pH 10.1) and is predicted to have two hydrophobic domains. Western blot analysis using a polyclonal antibody against the hydrophilic C-terminal part of the CrygeENU418-specific protein demonstrated its stable expression in the cataractous lenses; it was not found in the wild types. Histological analysis of the cataractous lenses indicated that the expression of the new protein disrupts the cellular structure of the eye lens.
THE ß- and
-crystallins were first characterized by ![]()
-crystallin superfamily. The corresponding genes are expressed preferentially in the eye and mainly in the ocular lens; low expression can also be found in the retina (![]()
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-crystallins is the Greek-key motif, which allows a dense packing of proteins in the ocular lens. The Cryg genes in all mammals consist of three exons: the first one codes for three amino acids, and the subsequent two are responsible for two Greek-key motifs each. Biochemically, the
-crystallins are characterized as monomers with a molecular mass of 21 kD (for reviews see ![]()
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Six members of the Cryg family (Cryga
Crygf) are located in a cluster on mouse chromosome 1 or human chromosome 2q33-35, whereas the seventh Cryg gene (Crygs) maps on mouse chromosome 16 or human chromosome 3. The Cryba2 gene encoding the ßA2-crystallin is located
8 cM distal to the mouse Cryg gene cluster; in humans, the relative map positions of the CRYG gene cluster and the CRYBA2 gene are similar with the CRYBA2 located at chromosome 2q34-36 (![]()
In mice, several mutations in the Cryg genes have been identified and demonstrated to lead to cataracts: the mutation ENU-436 affects the Cryga gene, the Nop mutation the Crygb gene (![]()
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While analyzing mice obtained from a large-scale ethylnitrosourea (ENU) mouse mutagenesis program (![]()
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| MATERIALS AND METHODS |
|---|
Animals:
(102/ElxC3H/El)F1 male mice were treated with ENU (250 mg/kg) at the age of 1012 weeks. Treated mice were mated with untreated female T-stock mice (![]()
Offspring were ophthalmologically examined for eye abnormalities at weaning using a slit lamp (SLM30, Zeiss, Oberkochen, Germany). Presumed mutations were genetically confirmed and further outcrossed to either strain 102/El or (102/ElxC3H/El)F1 hybrid mice (![]()
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Morphological analysis:
For gross documentation, lenses were enucleated under a dissecting microscope (MZ APO, Leica, Bensheim, Germany) and photographed. For detailed histological analysis, eye globes were fixed for 24 hr in Carnoy's solution, dehydrated, and embedded in JB-4 plastic medium (Polysciences, Eppelheim, Germany) according to the manufacturer's procedure. Sectioning was performed with an ultramicrotome (Ultratom OMU3; Reichert, Walldorf, Germany). Serial 2-µm transverse sections were cut with a dry glass knife, collected in water drops on glass slides, and after drying, the sections were stained with methylene blue and basic fuchsin. Alternatively, eye globes were fixed in 10% buffered formalin, embedded in paraffin, and sectioned with a Jung RM 205 microtome (Leica). Slides were stained with hematoxylin/eosin or propidium iodide. The sections were evaluated using a light microscope (Axioplan, Zeiss). Images were acquired by means of a scanning camera (Progress 3008, Jenoptik, Jena, Germany) equipped with a screen-capture program (KS100, Carl Zeiss Vision, Hallbergmoos, Germany) and imported into an image processing program (Photoshop V6.0, Adobe, Unterschleißheim, Germany). All wild-type controls were of the strain C3H/El.
Isolation of RNA, DNA, and PCR conditions:
RNA was isolated from lenses (stored at -80°) of newborn mice according to standard procedures. cDNA synthesis and PCR for mouse Cryg or Cryba2 genes using genomic DNA or cDNA as template were performed as described previously (![]()
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PCR products were sequenced commercially (SequiServe, Vaterstetten, Germany) after cloning into the pCR2.1 vector (Invitrogen, Leek, The Netherlands) or directly after elution from the agarose gel using kits from QIAGEN (Hilden, Germany) or Bio-Rad (Munich, Germany) and subsequent precipitation by ethanol and glycogen.
Biochemical analysis of the lens extracts:
Computer-assisted prediction of the biochemical properties of the mutated protein were performed using the Proteomics tools of the ExPASy Molecular Biology server (http://www.expasy.ch). In particular, we used Kyte-Doolittle algorithms for hydrophobicity (![]()
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General:
Chemicals were from Merck (Darmstadt, Germany) or Sigma Chemicals (Deisenhofen, Germany). The enzymes used for cloning and reverse transcription were from Roche (Mannheim, Germany), and restriction enzymes were from MBI Fermentas (St. Leon-Rot, Germany), if not otherwise mentioned.
| RESULTS |
|---|
Phenotype and lens morphology:
By slit lamp analysis of 28- to 42-day-old mice the ENU418 mutant was initially identified as a variable ocular phenotype ranging from corneal and anterior polar opacity with corneal lens attachment to total lens opacity (![]()
To understand the process of cataract formation in this particular mutant, histological analysis with different staining techniques was performed on eyes from animals at different ages. In lenses of newborn wild-type mice (Fig 2A), the lens fiber cells are ordered regularly, and their cell nuclei are present only in the cortical region. In the cortical region of the mutant lenses (Fig 2B), the cell nuclei of the lens cortex are also visible and they are arranged in a wave-like manner as in the wild types. In contrast, in the core of the mutant lenses, the structure of the fiber cells is completely disorganized; clefts, vacuoles, and swollen cells are visible. At the transition zone the cell nuclei appear to be swollen. Therefore, corresponding sections were stained with propidium iodide, which is recognized as a fluorescent stain for nucleic acids. It is obvious in the wild type that intact cell nuclei are present only in the cortical zone and only very few cell nuclei can be identified in the center of the lens. However, in the cataractous lenses an intensive but diffuse fluorescence occurs in the center. At the transition zone, individual larger spots can be recognized. It indicates that DNA persists in the cataractous region, which is usually completely degraded during the process of nuclear breakdown in terminal fiber differentiation. The cataractous zone is at the same area, where the degradation of the cell nuclei takes place in the wild type. Other ocular tissues besides the lens are not affected.
Histological analysis of the cataractous ENU418 lenses in 8-day-old homozygous mutants (Fig 3, a and b) demonstrated the same major phenotype of the central nuclear cataract as in the lenses of newborn mice. Additionally, alterations in the anterior suture become visible, indicating a reduced attachment of the fiber cells. The nuclei of the lens fiber cells remain visible in the lens central region. The phenotype is more severe at 3 weeks of age, including both the central cataractous region and clefts at the anterior suture (Fig 3C and Fig D). It is obvious from the analysis of serial sections that the extension of the suture defects is smaller than that of the nuclear cataractous region.
Mapping:
An allelism test with the Cat2ro mutant revealed no wild-type mice among 115 offspring tested, excluding a distance between Cat2ro and ENU418 >2.6 cM (95% confidence interval). The fine mapping revealed no recombination with the marker D1Mit156 (position 32.8 cM from the centromere) and just one recombination with the marker D1Mit181 (position 42.0 from the centromere) among 104 backcross offspring tested. These different linkage tests suggest that the critical region for the ENU418 mutation is <1 cM between the markers D1Mit156 and D1Mit181, including the Cryg gene cluster. Assuming 1 cM to correspond to 750 kb and an average gene density of 1215 genes per Mio base pair, we can estimate that the ENU418 critical region might contain 912 genes. The chromosomal location and the lens phenotype suggest that the Cryg gene cluster (position 32.0 cM from the centromere) and the closely linked Cryba2 gene (position 40.8 cM from the centromere) are excellent candidate genes.
Mutation analysis:
At first, the Cryba2 gene was tested as a candidate for the ENU418 phenotype. However, sequencing of PCR products derived from cDNA from the lenses of homozygous cataractous mice revealed no sequence alterations as compared to the database (accession no. AJ272228). Moreover, there was no apparent alteration in the amount of amplified Cryba2 cDNA, making a promoter mutation unlikely. Thus, the Cryba2 gene was eliminated as a candidate for ENU418.
Therefore, all six Cryg genes from the chromosome 1 gene cluster were amplified specifically by PCR using genomic DNA or lens cDNA as a template and sequenced. Several polymorphic sites were observed in the Cryga, Crygd, and Crygf genes, which were not associated with the cataractous phenotype. No sequence differences were observed for the Crygb and Crygc genes. The only difference between wild-type and mutant ENU418 DNA, which could be correlated to the cataractous phenotype, was the presence of an additional cDNA product containing intron 1 of the Cryge gene (accession no. NM_007777) and an A
G exchange at position 68 of this 92-bp intron (Fig 4). This indicates that splicing of the mutant intron 1 is not as efficient as in the wild type, and therefore, the spliced as well as the unspliced forms are present. The mutation in Cryge was confirmed by sequencing exons 1 and 2 as well as intron 1 from genomic DNA of homozygous mutants. The mutation creates a novel restriction site for ApaI, which was demonstrated in six homozygous mutants; it did not occur in six wild-type mice from different strains (Fig 5). Therefore, we conclude that this point mutation in the Cryge gene is responsible for the cataractous phenotype and designate the new allele symbol as CrygeENU418.
Biochemical analysis:
The CrygeENU418 phenotype is caused by a mutation in intron 1 leading to a less efficient splicing of this intron. Therefore, two Cryge mRNA products are present: a correctly spliced mRNA and an abnormal mRNA containing intron 1. The deduced amino acid sequence of the abnormal CrygeENU418 cDNA suggests that the corresponding protein will consist of the three N-terminal
E-crystallin amino acids followed by 153 amino acids completely different in their sequence from
E-crystallin (Fig 4B). The calculated molecular weight is 15.6 kD and its isolelectric point at pH 10.1. A search in the nonredundant SwissProt database using the entire 156-aa protein did not reveal any significant similarity to other proteins.
Analysis for hydrophobicity revealed two hydrophobic regions (amino acids 5778 and 80104), which might be interpreted as membrane spanning segments. In a part of the first hydrophobic domain and in the regions between amino acids 3849 and 118125,
-helical regions are suggested (in total, 17% of the protein). All other regions are predicted to be randomly coiled (66%) or extended ß-strands (17%; GOR4). As outlined by the PROSCAN program, additional putative biochemical features of the novel protein are three N-myristoylation sites and four phosphorylation sites (one for casein kinase II and three for protein kinase C).
Using a polyclonal antibody against the most hydrophilic region (amino acids 123136), we could demonstrate that this particular protein is present in the water-soluble extract from cataractous lenses at the expected size (and a somewhat smaller form in a lesser amount) but not in the lenses of wild-type mice (Fig 6). In addition, the antibody recognizes a 20-kD protein in both the wild-type and mutant lens extracts. However, since the corresponding preimmune serum of this particular antibody did not show any reaction against either the wild-type or the mutant lens extract, it is concluded that the antibody cross-reacts with other (unknown) proteins in both the wild-type and the cataractous lenses. Further experiments might be necessary to identify the corresponding protein(s) and to elaborate whether the antibody recognizes identical proteins in the wild type and in the mutant.
|
| DISCUSSION |
|---|
In this article, we describe the molecular characterization of an ENU-induced mouse cataract mutation, ENU418, due to a base pair substitution in intron 1 changing its splicing characteristics. Restriction analysis demonstrated that the mutation segregates with the phenotype; therefore, it is strongly suggested that the mutation in the Cryge gene is responsible for the cataractous phenotype.
The novel Cryge allele, CrygeENU418, leads to a nuclear and cortical cataract. At the histological level it is obvious that the lens nucleus and the inner cortex are affected by the presence of pycnotic fiber cell nuclei. Comparing the histological observations at early postnatal stages, CrygeENU418 is phenotypically very similar to other cataract mutants caused by mutations in a variety of genes like Gja8 (encoding connexin50; ![]()
A-crystallin; ![]()
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Besides CrygeENU418, several other mouse mutations have been reported to affect the Cryg gene cluster and to lead to cataracts: these include the Crygeelo (![]()
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-crystallin or they express a truncated form of the
-crystallin with or without a few new amino acids. The CrygeENU418 is the first mutation, which leads to a splicing variation within a Cryg gene.
The A
G mutation in intron 1 is 25 bp upstream of the 3'-end of the intron, where the consensus sequence that is suggested to be responsible for U2snRNA binding and lariat formation usually occurs. Indeed, the mutation destroys the adenosine residue exactly at the branch point. The surrounding sequence in (102/ElxC3H/El)F1 hybrid and T-stock mice (the genotypes in the mating that produced the founder mutant) matches in 6 out of 7 bp to the corresponding consensus sequence [YNCTGAC; Y, pyrimidine (T/C); N, any base; ![]()
Corresponding to the increasing number of characterized cataract mutants in mice, mutations in human CRYG genes have been shown to be associated with cataract formation: the Coppock-like cataract (![]()
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The numerous mutations affecting Cryg/CRYG genes that cause cataracts makes this cluster very interesting. On one hand, this high number of pathological phenotypes supports the importance of these genes for lens transparency. On the other hand, the evolutionary "knock-out" of two of these six genes in humans (
CRYGE and
CRYGF) suggests that the loss of at least a few of them seems to be without any biological relevance.
In summary, we demonstrated here that an ENU-induced mutation in intron 1 of the Cryge gene leads to an altered mRNA containing the entire intron 1 sequence leading to an abnormal open reading frame and a novel, pathological translation product in the eye lens. To our knowledge, it is the first report of a splicing mutation in a Cryg gene leading to cataracts.
| FOOTNOTES |
|---|
2 Present address: GSF-Institute of Human Genetics, D-85764 Neuherberg, Germany. ![]()
3 Present address: GSF-Institute of Epidemiology, D-85764 Neuherberg, Germany. ![]()
| ACKNOWLEDGMENTS |
|---|
The expert technical assistance of Carmen Arnhold, Erika Bürkle, Sibylle Frischholz, Bianca Hildebrand, Mareike Maurer, Birgitta May, and Irmgard Zaus is gratefully acknowledged. Doris Münster contributed to this study during her practical courses at the Technical University, Munich. Oligonucleotides were obtained from Utz Linzner (GSF-Institute of Experimental Genetics).
Manuscript received January 10, 2002; Accepted for publication May 7, 2002.
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