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Corresponding author: Fred Winston, Harvard Medical School, 200 Longwood Ave., Boston, MA 02115., winston{at}rascal.med.harvard.edu (E-mail)
Communicating editor: A. P. MITCHELL
| ABSTRACT |
|---|
Spt3 of Saccharomyces cerevisiae is required for the normal transcription of many genes in vivo. Past studies have shown that Spt3 is required for both mating and sporulation, two events that initiate when cells are at G1/START. We now show that Spt3 is needed for two other events that begin at G1/START, diploid filamentous growth and haploid invasive growth. In addition, Spt3 is required for normal expression of FLO11, a gene required for filamentous growth, although this defect is not the sole cause of the spt3
/spt3
filamentous growth defect. To extend our studies of Spt3's role in filamentous growth to the pathogenic yeast Candida albicans, we have identified the C. albicans SPT3 gene and have studied its role in C. albicans filamentous growth and virulence. Surprisingly, C. albicans spt3
/spt3
mutants are hyperfilamentous, the opposite phenotype observed for S. cerevisiae spt3
/spt3
mutants. Furthermore, C. albicans spt3
/spt3
mutants are avirulent in mice. These experiments demonstrate that Spt3 plays important but opposite roles in filamentous growth in S. cerevisiae and C. albicans.
THE Saccharomyces cerevisiae transcription factor Spt3 was identified originally by mutations that suppress the transcriptional defects caused by Ty and Ty LTR insertion mutations (![]()
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3% of S. cerevisiae genes (![]()
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Spt3 is a component of the SAGA (Spt-Ada-Gcn-Acetyltransferase) coactivator complex (![]()
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S. cerevisiae and C. albicans can each grow in both yeast and filamentous forms. The form of S. cerevisiae filamentous growth most intensively studied is diploid pseudohyphal growth (![]()
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Two aspects of Spt3 function led us to examine whether Spt3 and other SAGA components are involved in S. cerevisiae diploid pseudohyphal growth. First, spt3
mutants are defective in mating (![]()
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In this article we show that Spt3 is required for both diploid pseudohyphal growth and haploid invasive growth of S. cerevisiae. Consistent with these spt3
phenotypes, spt3
mutants have decreased FLO11 mRNA levels. However, our results demonstrate that the defect in FLO11 transcription is not the sole cause of the spt3
filamentous and invasive growth defects. In addition, we have identified the C. albicans SPT3 gene and have constructed a C. albicans spt3
/spt3
mutant. In contrast to the S. cerevisiae spt3
/spt3
nonfilamentous phenotype, the C. albicans spt3
/spt3
mutant is hyperfilamentous. Furthermore, C. albicans spt3
/spt3
mutants are avirulent in mice. Taken together, our data demonstrate that C. albicans Spt3 acts as a repressor of filamentous growth and that it is also required for virulence.
| MATERIALS AND METHODS |
|---|
Yeast strains:
All S. cerevisiae strains used in these studies (Table 1) are in the
1278b genetic background (![]()
, spt7
, spt20
, and gcn5
deletion mutations were each recombined into strain 10560-6B (![]()
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203::TRP1, a 2.5-kb SspI fragment from pAH100 (![]()
402::LEU2, a 2.7-kb MluI-SphI fragment from pLG59 (![]()
100::URA3, a 2.3-kb ClaI-XbaI fragment from pSR56 (![]()
::LEU2, a 3.1-kb SphI-SacI fragment from YCplac111-
gcn5::LEU2 (kindly provided by Kevin Struhl). The deletions were confirmed by PCR. These strains were then tested for several mutant phenotypes previously identified in the S288C background, including inositol auxotrophy, hydroxyurea sensitivity, the ability to use galactose as a carbon source, and slow growth on minimal media. In all cases, the mutant phenotypes correlated well between the two genetic backgrounds. One difference noted between the two genetic backgrounds is that an unusual cell morphology, previously observed in spt7
and spt20
mutants, is more severe in the
1278B background. The cells appear to be elongated and swollen and the buds do not always separate from the mother cell. However, these cells do not form distinct chains as do pseudohyphal cells (data not shown).
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The C. albicans strains (Table 2) constructed for this study are derived from strains BWP17 (![]()
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/spt3
homozygous diploid was constructed in two steps. First, the XcmI-StuI fragment of plasmid pLP13, containing the spt3
::ARG4 allele, was used to transform BWP17 to Arg+. Second, the XcmI-StuI fragment of plasmid pLP12, containing the spt3
::URA3 allele, was used to transform the SPT3/spt3
::ARG4 strain FWC6 to Ura+ using Sc-Arg-Ura plates. A wild-type copy of SPT3 was integrated into strains FWC7, FWC8, and FWC9 (spt3
::URA3/spt3
::ARG4) with NruI-digested pLP14, resulting in integration of SPT3 at HIS1. These transformants were selected on SC-Ura-Arg-His medium. The heterozygote strain FWC16 was created by transforming NruI-digested pGEMT-HIS1 and ClaI-digested pRSARG4 into strain FWC5. For all C. albicans transformants, the correct integration event was confirmed by Southern blot analysis (![]()
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Media and growth conditions:
Rich (YPD), minimal (SD), and synthetic complete (SC) media were prepared as previously described (![]()
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Cloning and DNA sequence analysis of the C. albicans SPT3 gene:
C. albicans SPT3 was cloned by complementation of the S. cerevisiae spt3
mutant phenotypes. The host strain, FY293, contains two Ty1-derived insertion mutations, his4-917
and lys2-173R2. In an SPT3 wild-type strain these insertion mutations confer His- Lys+ phenotypes; in an spt3
mutant such as FY293, the phenotypes are reversed to His+ Lys-. To clone C. albicans SPT3, strain FY293 was transformed with 0.5 µg of a YEp352 C. albicans genomic library (![]()
Plasmids:
All plasmids were constructed by standard procedures with exceptions noted below (![]()
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::URA3 and spt3
::ARG4 deletion constructs were each constructed in three steps. The spt3
::URA3 construct was made by using primer pairs to amplify 346 bp upstream of SPT3 and 371 bp downstream of SPT3 and another set to amplify URA3 from pGEMURA3 (![]()
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SpeI (![]()
construct had recombined to replace SPT3 on the plasmid. Plasmids were then rescued from yeast and confirmed by standard procedures (![]()
::URA3) and pLP13 (YEp352-spt3
::ARG4). Plasmid pLP14, used to rescue the spt3
homozygous mutant phenotype, was constructed from SacI-NsiI-digested pGEMT-HIS1 (![]()
Overexpression of FLO11:
The strains containing either the CUP1-FLO11 plasmid or the CUP1 vector only were grown overnight in SC-Trp liquid media with 0, 0.05, or 0.1 mM copper. The cultures were then plated for
100 colonies per plate on SLAD containing 0, 0.05, or 0.1 mM copper. The plates were then incubated at 30° for 10 days and the colonies were scored each day for their pseudohyphal growth using a light microscope.
RNA isolation and Northern analysis:
RNA isolation and Northern analysis were performed as previously described (![]()
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Mouse studies:
C. albicans strains used in infection experiments were grown in YPD + Uri to OD600 between 0.9 and 1, corresponding to 0.51.0 x 108 cells/ml, depending upon the particular strain. The C. albicans strains used were SC5314, HLC54, FWC15, FWC13, FWC11, FWC10, FWC14, and FWC12. C. albicans cells were counted and washed once with 0.5 ml of phosphate-buffered saline (PBS) pH 7. BALB/cJ mice 56 weeks of age were obtained from Jackson Laboratories and maintained in a barrier facility at Harvard Medical School. All mice were infected by injection of 300 µl of PBS suspension containing 5 x 106 cells into lateral tail veins. Four mice were tested for each of the three spt3
/spt3
mutant classes, their respective rescue strains, wild type, and a cph1 efg1 double mutant used as a negative control (![]()
| RESULTS |
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Spt3 is required for both pseudohyphal and invasive growth in S. cerevisiae:
To study pseudohyphal filamentous growth in SAGA mutants, we first constructed strains that contain deletion mutations of four SAGA genes, SPT3, SPT7, SPT20, and GCN5, in a genetic background permissive for S. cerevisiae filamentous growth,
1278b (![]()
/spt3
mutant, which was completely defective for filamentous growth. The colonies had completely smooth edges and all cells examined were in the budding yeast form. The gcn5
/gcn5
mutant showed only a modest defectafter 4 days of incubation it displayed reduced filamentous growth, but after 8 days it was indistinguishable from the wild-type strain. Effects of the spt7
and spt20
mutations on filamentous growth were difficult to interpret as both mutants grew poorly and formed irregular cells and colonies under all growth conditions in the
1278b genetic background (Fig 1 and data not shown). Our results demonstrate that at least one SAGA component, Spt3, is essential for filamentous growth, while another, Gcn5, may play a minor role.
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A process closely related to diploid filamentous growth is haploid invasion, characterized by filament formation and agar invasion (![]()
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mutants are defective for haploid invasive growth compared to wild type (Fig 2). The gcn5
, spt7
(Fig 2), and spt20
(data not shown) mutants are also defective for haploid invasion, although the defect appears to be less severe than for spt3
.
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Analysis of FLO11 expression and its relationship to the spt3
/spt3
filamentous growth defect:
Expression of the FLO11 gene is necessary for S. cerevisiae filamentous and invasive growth (![]()
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mutants, FLO11 mRNA levels are reduced approximately fivefold compared to wild-type levels. In gcn5
mutants, FLO11 mRNA levels are reduced twofold, while in spt20
and spt7
mutants there is a severe reduction in FLO11 mRNA levels (Fig 3 and data not shown). The relative effects among these three classes of SAGA mutants are similar to other SAGA mutant phenotypes that have been examined (![]()
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To determine if the strong spt3
pseudohyphal and invasive growth defects are conferred solely by reduced FLO11 mRNA levels, we expressed FLO11 under the control of an Spt3-independent promoter, CUP1 (CUP1-FLO11), and determined if ectopic FLO11 expression suppresses the spt3
/spt3
defects. Our results show that CUP-FLO11 expression is unable to suppress the pseudohyphal growth defect of an spt3
/spt3
mutant (data not shown). As a positive control for FLO11 expression, CUP1-FLO11 was shown to complement the filamentous growth defect of the flo11
mutant. In these experiments FLO11 mRNA levels were approximately equal in the flo11
and spt3
strains and at a level greater than those in wild-type diploids without CUP1-FLO11 (data not shown). Thus, Spt3's role in filamentous growth is not limited to a role in FLO11 expression.
Cloning and characterization of the C. albicans SPT3 gene:
Several factors known to be required for S. cerevisiae filamentous growth are also required for C. albicans filamentous growth (![]()
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mutation (MATERIALS AND METHODS). Sequence analysis identified a 986-bp open reading frame homologous to S. cerevisiae SPT3. This sequence is also now present in the C. albicans genome sequence database (http://genolist.pasteur.fr/CandidaDB/). The predicted C. albicans Spt3 protein is 59% identical and 79% similar to S. cerevisiae Spt3. The two histone-fold motifs that are conserved among previously analyzed Spt3 protein sequences from human, S. cerevisiae, and other yeasts (![]()
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mutant phenotypes tested, including the spt3
/spt3
pseudohyphal growth defect (Fig 4A), the spt3
growth defect on galactose as a carbon source, and the spt3
Spt- phenotypes (suppression of the his4-917
and lys2-173R2 insertion mutations; data not shown). These results demonstrate strong functional and sequence conservation between the S. cerevisiae and C. albicans SPT3 genes.
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C. albicans spt3
/spt3
mutants are hyperfilamentous:
To test the role of Spt3 in C. albicans filamentous growth, we constructed an spt3
/spt3
mutant. Since all C. albicans strains are diploids, we deleted both copies of SPT3 in C. albicans strain BWP17, replacing one copy of SPT3 with URA3 and the second copy of SPT3 with ARG4 (described in MATERIALS AND METHODS). Both gene replacements were confirmed by Southern analysis. The homozygous deletion mutant, spt3
::URA3/spt3
::ARG4 (hereafter referred to as spt3
/spt3
), has several obvious growth phenotypes: (1) slow growth compared to wild-type strains in both liquid and solid media (Fig 4B); (2) flocculence in liquid media; and (3) a wrinkled colony morphology on YPD, SD, and SC solid media.
During purification of different initial isolates of spt3
/spt3
mutants, we noted that the growth and other mutant phenotypes varied over a moderate range. Fourteen spt3
/spt3
isolates that fell throughout this range of phenotypes were studied in greater detail. These isolates define three phenotypic classes (classes 1, 2, and 3). Class 1 mutants (seven isolates) grew as uniformly small, wrinkled colonies on YPD plates; class 2 mutants (four isolates) were more variable, with mostly small colonies, but also some larger smooth colonies; and class 3 mutants (three isolates) gave rise to a larger proportion of large, smooth colonies. As described below, these classes also vary with respect to filamentous growth, and the colony morphologies depended upon the auxotrophies in the strains. The different classes appear to have arisen during the strain constructions and their phenotypes remained stable during purification. Furthermore, these three classes were repeatedly observed when reconstructing the spt3
/spt3
homozygous mutant. The different classes might be caused by second-site mutations that modify the severity of the spt3
/spt3
-conferred growth defect. To confirm that the phenotypes observed in all three classes are caused by the spt3
/spt3
deletions, we integrated a wild-type copy of SPT3 at the HIS1 locus in a representative of each class. These transformants all have a wild-type growth rate and colony morphology. They are also wild-type with respect to most of the filamentous phenotypes, as described below. The only phenotype observed was a slightly larger cell size compared to the wild-type strain, a property we also saw for the SPT3/spt3
heterozygote (Fig 5B). Thus, the phenotypes observed in these spt3
/spt3
mutants are caused by loss of Spt3 function.
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To test whether C. albicans spt3
/spt3
mutants have defects in filamentous growth, we first tested them under conditions noninducing for filamentous growth, on YPD solid media at 30°. For this analysis, we compared strains that were prototrophic, to avoid any possible effects of auxotrophies on growth. When the three classes of spt3
/spt3
mutants were in a prototrophic background, we no longer saw the colony size heterogenity that was observed for the original isolates. However, differences in the degree of filamentous growth were still observed, as described below. Under these growth conditions, wild-type C. albicans formed smooth and round colonies (Fig 5A) that contained all budding yeast (Fig 5B). In strong contrast, the spt3
/spt3
mutants formed wrinkled, irregularly shaped colonies that contained filaments (Fig 5A and Fig B). The spt3
/spt3
class 1 mutants formed colonies that were composed almost entirely of filamentously growing cells. The class 2 and class 3 mutants also formed wrinkled colonies. In these cases, the colonies contained some filaments, but had a greater proportion of budding yeast. The filamentous forms observed in these experiments consisted of both hyphae and pseudohyphae. All of the hyperfilamentous phenotypes observed in the spt3
/spt3
mutants on YPD were complemented by the introduction of a copy of wild-type SPT3 (Fig 5A and Fig B; see column labeled "rescue"). Thus, although we observed a range in the severity of the hyperfilamentous phenotype, we conclude that the loss of Spt3 function in C. albicans results in filamentous growth under noninducing conditions.
We also examined filamentous growth of wild-type and spt3
/spt3
strains on M199 media, which induces wild-type C. albicans filamentous growth (![]()
/spt3
mutants, cells were plated from YPD-grown cultures that consisted of a mix of budding and hyphal forms for all three classes. In contrast to the wild-type strain, the spt3
/spt3
class 1 mutant exhibited entirely hyphal growth after only 1 day of incubation (Fig 5C and Fig D). The spt3
/spt3
class 2 and 3 mutants exhibited a more intermediate mixture of cell types, containing both filamentous and budding forms. When a copy of wild-type SPT3 was integrated into representatives of the three classes of spt3
/spt3
mutants, we observed complementation of the hyperfilamentous growth (Fig 5D). In conclusion, on inducing media, spt3
/spt3
mutants also exhibit hyperfilamentous growth.
C. albicans spt3
/spt3
mutants are avirulent in mice:
Previous studies of C. albicans mutants that are either nonfilamentous or hyperfilamentous have shown that they are avirulent (![]()
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/spt3
mutants, we used them to infect mice and monitored mouse survival over a period of 30 days. In these experiments, we tested the three classes of spt3
/spt3
mutants. We also tested each of these mutants containing a wild-type copy of SPT3 integrated at HIS1. For each infection, 5 x 106 cells were injected in the tail veins of BALB/cJ mice. Four mice were tested for each yeast strain. Our results (Fig 6) demonstrate that all three classes of spt3
/spt3
mutants are avirulent as all of the mice infected with the three classes of spt3
/spt3
mutants remained viable and healthy over the 30 days. In contrast, infection with the wild-type C. albicans strain resulted in the death of all four mice within 2 days. The three classes of spt3
/spt3
mutants that also contained a single copy of wild-type SPT3 integrated at HIS1 displayed partial complementation with an intermediate level of virulence, suggesting that virulence is sensitive to the level of Spt3. Taken together, these results demonstrate that virulence of C. albicans is dependent upon Spt3.
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| DISCUSSION |
|---|
Our results show that Spt3 plays critical, but opposite roles in filamentous growth in both S. cerevisiae and C. albicans. In S. cerevisiae, an spt3
mutation causes severe defects in both pseudohyphal and invasive growth, suggesting that Spt3 plays a positive role in filamentous growth. In contrast, in C. albicans, an spt3
/spt3
mutation causes hyperfilamentous growth, strongly suggesting that Spt3 plays a negative role in filamentous growth. Furthermore, a C. albicans spt3
/spt3
mutant is avirulent in mice. Since the C. albicans SPT3 gene can fully complement all tested S. cerevisiae spt3
mutant phenotypes, including the filamentous growth defect, we conclude that the opposite roles of Spt3 between the two yeasts are not caused by differences between the genes themselves, but rather by differences between the S. cerevisiae and C. albicans regulatory systems that control filamentous growth. The apparent negative role of Spt3 in C. albicans filamentous growth is consistent with evidence that Spt3 plays both positive and negative roles in transcription in S. cerevisiae (![]()
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Our results suggest that an S. cerevisiae spt3
mutant has multiple transcriptional defects that impair filamentous growth. In this work, we have shown that Spt3 is required for normal levels of FLO11 mRNA. Possibly, a direct activator of FLO11 recruits Spt3, as part of the SAGA complex, to the FLO11 promoter to allow Spt3-dependent activation. Such an activity for Spt3 has been demonstrated at the GAL1 promoter (![]()
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mutant (![]()
effect on FLO11 mRNA levels cannot be the only defect impairing filamentous growth, as ectopic expression of FLO11 does not suppress the filamentous defect in spt3
/spt3
mutants. Genome-wide expression analysis of spt3
mutants grown in media that induces pseudohyphal growth will help to identify the extent of the requirement for Spt3 during filamentous growth.
Current evidence suggests that C. albicans Spt3 likely functions as the part of a protein complex in C. albicans that is similar to the SAGA complex of S. cerevisiae. Previous studies have shown that Spt3 and SAGA are conserved throughout eukaryotes (![]()
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mutation, demonstrating strong functional conservation. In addition, sequences homologous to the SAGA genes SPT7, SPT8, SPT20, ADA2, and GCN5 have also been found in the partially completed C. albicans genome sequence (http://genolist.pasteur.fr/CandidaDB/). Therefore, it seems likely that a C. albicans SAGA complex plays critical roles in transcription and filamentous growth. Since at least one SAGA member, Spt7, is only weakly conserved between yeast and humans (![]()
One complication in our studies of C. albicans spt3
/spt3
mutants was that we observed three phenotypic classes that exhibited different degrees of hyperfilamentous growth. These different phenotypes may be caused by a second mutation in another gene that partially suppresses the spt3
/spt3
mutant phenotype. On the basis of studies in S. cerevisiae, the strongest candidates for such a gene are SPT15 and SPT8, as mutations in these genes have been shown to have allele-specific interactions with mutations in SPT3 (![]()
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Several different types of genes have been shown to be required for C. albicans virulence, including transcription factors that play positive and negative roles in controlling filamentous growth (![]()
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/spt3
mutants suggests that Spt3 plays an important role in controlling gene expression in C. albicans. Genome-wide expression analysis of C. albicans spt3
/spt3
mutants should help to elucidate further the role of Spt3 in C. albicans transcription and filamentous growth.
| FOOTNOTES |
|---|
Sequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession no.
AF142757. ![]()
| ACKNOWLEDGMENTS |
|---|
We are grateful to Gerald Fink, William Fonzi, Steve Hanes, Julie Kohler, Aaron Mitchell, Shannon Roberts, Kevin Struhl, and Cora Styles for strains and advice. We thank Aimée Dudley and Andrea Duina for very helpful comments on the manuscript and Sheldon Rowan for help with the microscopy. This work was supported by National Institutes of Health grant GM-45720 to F.W. W.F.D. is an Assistant Investigator of the Howard Hughes Medical Institute. V.L.B. is a fellow of the Irvington Institute for Immunological Research.
Manuscript received December 6, 2001; Accepted for publication February 26, 2002.
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