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Comparative Analysis of Quantitative Trait Loci Controlling Glucosinolates, Myrosinase and Insect Resistance in Arabidopsis thaliana
Daniel Kliebenstein1,a, Deana Pedersenb, Bridget Barkerb, and Thomas Mitchell-Oldsaa Department of Genetics and Evolution, Max-Planck Institute of Chemical Ecology, 07745 Jena, Germany
b Division of Biological Sciences, University of Montana, Missoula, Montana 59812
Corresponding author: Thomas Mitchell-Olds, Max Planck Institute for Chemical Ecology, Winzerlaer Strasse 10, D-07745 Jena, Germany., tmo{at}ice.mpg.de (E-mail)
Communicating editor: J. A. BIRCHLER
| ABSTRACT |
|---|
Evolutionary interactions among insect herbivores and plant chemical defenses have generated systems where plant compounds have opposing fitness consequences for host plants, depending on attack by various insect herbivores. This interplay complicates understanding of fitness costs and benefits of plant chemical defenses. We are studying the role of the glucosinolate-myrosinase chemical defense system in protecting Arabidopsis thaliana from specialist and generalist insect herbivory. We used two Arabidopsis recombinant inbred populations in which we had previously mapped QTL controlling variation in the glucosinolate-myrosinase system. In this study we mapped QTL controlling resistance to specialist (Plutella xylostella) and generalist (Trichoplusia ni) herbivores. We identified a number of QTL that are specific to one herbivore or the other, as well as a single QTL that controls resistance to both insects. Comparison of QTL for herbivory, glucosinolates, and myrosinase showed that T. ni herbivory is strongly deterred by higher glucosinolate levels, faster breakdown rates, and specific chemical structures. In contrast, P. xylostella herbivory is uncorrelated with variation in the glucosinolate-myrosinase system. This agrees with evolutionary theory stating that specialist insects may overcome host plant chemical defenses, whereas generalists will be sensitive to these same defenses.
PLANT chemical defense systems and their impact on specialist vs. generalist insect herbivores have intrigued scientists for decades. It is clear that some compounds elicit contrasting behavioral responses from various insect herbivores (![]()
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The glucosinolate-myrosinase system is believed to protect plants from herbivore damage (![]()
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Effects of the glucosinolate-myrosinase system on specialist and generalist herbivores display heterogeneous results that do not strictly adhere to chemical defense theory. For example, increasing glucosinolate levels in Brassica juncea reduced feeding by a generalist lepidopteran herbivore, Spodoptera eridania, while the specialist Plutella xylostella was unaffected by glucosinolate concentration in B. juncea. Further, increased glucosinolate levels in B. rapa also led to decreased feeding by both the specialist, Pieris rapae, and the generalist, Trichoplusia ni (![]()
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Effects of the glucosinolate-myrosinase system on generalist and specialist herbivores may be clarified by elucidating genetic control of defensive physiology and its effects on herbivory by generalists and specialists. Arabidopsis thaliana ecotypes differ with respect to glucosinolate content and composition, providing a suitable system for quantitative genetics (![]()
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To analyze genetic variation underlying defense against specialist and generalist insect herbivores, we measured feeding rates of T. ni (cabbage looper, T. ni, generalist) and P. xylostella (diamondback moth, P. xylostella, specialist) lepidopteran herbivores on Arabidopsis Ler x Col and Ler x Cvi RI lines. T. ni larvae have a wide host range that includes Brassica crops, while P. xylostella larvae feed only on Brassicaceae (![]()
| MATERIALS AND METHODS |
|---|
Plant and insect growth conditions:
All plant lines were obtained from the Arabidopsis Stock Center (Nottingham, UK). Plants were grown in potting soil mix with timed-release fertilizer (Osmocote). The plants were thinned to a density of one plant per cell in a 96-cell flat (507 plants m-2) and grown under 14-hr day length with cool white and GrowLux fluorescent bulbs in a controlled environment growth room. After planting, flats were cold stratified at 4° for 5 days and then moved to the growth room. After 4 weeks (before the onset of flowering) the plants were analyzed for insect herbivory. P. xylostella eggs were obtained from Anthony Shelton (Department of Entomology, New York State Agricultural Experimental Station, Geneva, NY) and raised on an artificial diet according to published procedures (![]()
Measuring insect herbivory:
Plant diameter was measured when the plants were 4 weeks old; then a single first instar P. xylostella or T. ni larva was placed on each rosette for 48 hr. The insects were taken directly from artificial growth medium and placed on the plants without a starvation period. The percentage of the rosette removed by the insect was estimated by eye with the aid of a transparent 1-cm2 grid. Larvae were allowed to roam at will during the experiment. However, there was at least one insect on >95% of the plants at the end of each experiment. Additionally, all plants were investigated for the presence of insect larvae, and any plants lacking an insect were noted and removed from analysis. There was no significant variation among families for the proportions of insects remaining for the full 48 hr (our unpublished data).
Experimental design:
Insect herbivory assays were carried out on the parental ecotypes (Col, Ler, and Cvi) to determine whether they differed genetically. The percentage of the rosette eaten by a single insect larva over 48 hr was measured on at least 30 plants from each ecotype. In addition, 95 RI lines from the Col x Ler cross and 160 lines from the Cvi x Ler cross were scored for herbivory damage (![]()
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We used a randomized complete blocks design with 1013 replicates for both populations
. For the Ler x Col RI lines, each 96-cell flat contained one plant from each of the 95 lines being tested and a Col plant. For the Ler x Cvi RI population, pairs of 96-cell flats were analyzed as a single replicate to enable the use of all 160 lines. The 160 lines were divided equally among the two flats and a Ler and Cvi plant were planted in both flats. This was repeated independently to analyze both T. ni and P. xylostella herbivory. Mapping data for the Ler x Col and Ler x Cvi RI lines were obtained from the Nottingham Stock Center (http://nasc.nott.ac.uk/).
Aliphatic glucosinolate QTL mapping:
A total of 300 Ler x Col RI lines were grown for 4 weeks in a randomized design three independent times (![]()
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Statistical methods:
Genetic variation among RI lines was analyzed as randomized complete blocks ANOVA using the model HERBIVORY = CONSTANT + FLAT + LINE + SIZE x SIZE. SIZE is a covariate included to control for developmental differences that may occur among individuals of the same line due to size-related environmental causes. Because lines were not replicated within replicates, it was necessary to assume that LINE x FLAT interaction was absent. QTL location and effects were estimated by utilizing the family mean for each RI line in conjunction with both interval mapping and composite interval mapping in QTL Cartographer (![]()
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Genetic correlations, rG, were estimated from the Pearson product-moment correlation coefficient among family means (typically using the least-squares family means, controlling for flat effects in ANOVA). When traits (such as resistance to several insect species) are measured in separate experiments, rG provides an unbiased estimator of the genetic correlation (![]()

where ERECTA is a categorical variable indicating genotype at the erecta locus. If a significant regression of P. xylostella resistance onto T. ni resistance is found in model 1, but is not significant in model 2, then the correlation between resistance to these herbivores is attributable to the QTL located near the erecta.
| RESULTS |
|---|
Variation among parental ecotypes for insect herbivory:
Comparison of the mean levels of herbivore damage for T. ni and P. xylostella feeding showed significant differences between Landsberg erecta (Ler), Cape Verdi Islands (Cvi), and Columbia (Col; Fig 1). All three ecotypes had significantly different T. ni herbivory levels (N = 91, R2 = 0.31, P < 0.0001). Cvi was the most resistant while Ler was the most susceptible. P. xylostella feeding also varied significantly, with Ler showing more resistance than Col and Cvi, which had nearly identical feeding scores (Fig 1). These results indicate that resistance to insect herbivory varies among Ler, Col, and Cvi.
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Variation among RI lines for insect herbivory:
Analysis of rosette damage by P. xylostella and T. ni larvae on 96 Ler x Col RI lines and 160 Ler x Cvi RI lines (Table 1) showed significant differences, indicating that these RI populations can be used to identify loci mediating insect defense (![]()
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QTL regulating resistance to T. ni herbivory:
The mean levels of feeding damage per line were utilized for mapping QTL controlling resistance to T. ni herbivory. In both Ler x Col and Ler x Cvi, three QTL affecting the level of T. ni herbivory were mapped (Fig 2). None of the QTL overlapped between the two crosses, indicating that at least six loci controlling T. ni resistance segregate in these populations (Fig 2). Increased susceptibility to T. ni herbivory was mediated by the Ler alleles at QTL in the Ler x Col cross and at two of the three QTL in the Ler x Cvi cross (Fig 2). The Ler alleles at the QTL near AOP and EC198L caused increased susceptibility. All six QTL alter insect herbivory by 1020% (Fig 2).
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T. ni herbivory is negatively correlated with myrosinase activity:
In the Ler x Col RI population there are two QTL controlling myrosinase activity (![]()
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T. ni herbivory is negatively correlated with glucosinolate concentration:
In the Ler x Cvi RI population, three QTL regulate leaf aliphatic glucosinolate concentration (![]()
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In the Ler x Col RI population, the correlation between T. ni herbivory and glucosinolate concentration was not statistically significant (Fig 4B, rG = 0.08, P = 0.42, N = 93), perhaps because the Ler x Col cross has substantially less variation in glucosinolate concentration. Further, no herbivory or aliphatic glucosinolate QTL overlapped in this cross (Fig 5).
|
QTL regulating resistance to P. xylostella herbivory:
The line means of feeding damage by P. xylostella on Ler x Col and Ler x Cvi RI lines were utilized to identify QTL regulating P. xylostella herbivory. In the Ler x Cvi RI population two QTL were identified. They mapped near erecta on chromosome II and near the amplified fragment length polymorphism marker DF184L on chromosome V (Fig 6; ![]()
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Comparison of P. xylostella herbivory and the glucosinolate-myrosinase system:
Comparison of P. xylostella herbivory to leaf aliphatic glucosinolate concentration in the Ler x Cvi population found no significant correlation between these traits (N = 93, rG = 0.08, P = 0.416). Further, no QTL controlling resistance to P. xylostella cosegregated with QTL regulating any known aspect of the glucosinolate-myrosinase system (Fig 6; ![]()
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One QTL regulates resistance to both insects:
Resistance to T. ni and P. xylostella herbivory in Ler x Cvi is positively correlated (Fig 7, rG = 0.23, P = 0.003, N = 160). Comparison of resistance QTL for the two insects indicates that the erecta region influences damage by both herbivores in the Ler x Cvi lines (Fig 2 and Fig 6). ANCOVA showed that correlated genetic patterns of resistance were completely attributable to the QTL located near erecta: (rG = 0.50, model 2: ERECTA factor: P < 0.001, TNI covariate: P = 0.495, N = 160).
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| DISCUSSION |
|---|
We found higher levels of genetic variation for resistance to the generalist herbivore, T. ni, than for the component mediating specialist, P. xylostella (Table 1). Furthermore, five QTL regulating T. ni herbivory overlap with QTL known to regulate the glucosinolate-myrosinase system, while P. xylostella feeding did not appear to be influenced by the glucosinolate-myrosinase system (Fig 2 and Fig 6; ![]()
The AOP and EC198L QTL for glucosinolate levels overlapped with T. ni herbivory QTL in Cvi x Ler (Fig 2). Both loci influence glucosinolate concentration, while AOP also influences glucosinolate type (![]()
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We did not find significant insect resistance QTL near AOP and EC198L in the Ler x Col lines (Fig 2), and glucosinolate amount was not significantly correlated with herbivory in this cross (data not shown). The apparent discrepancy between glucosinolate concentration and feeding damage between Ler x Cvi and Ler x Col may be explained by the differences in maximal glucosinolate levels between the two populations. The Ler x Cvi population has maximal aliphatic glucosinolate levels of
20 µmol per gram dry weight (gDWT-1) while the Ler x Col population reaches only 5 µmol gDWT-1 (![]()
While QTL regulating glucosinolate amount were not found to overlap with T. ni resistance QTL in Ler x Col, one resistance QTL overlapped with the NCC1 myrosinase activity QTL (![]()
The other two T. ni herbivory QTL in the Ler x Col cross, nga280 and AthChib, have been shown to regulate the type of aliphatic glucosinolate breakdown product produced after tissue damage (![]()
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High myrosinase levels have previously been shown to be a feeding deterrent for P. xylostella (![]()
QTL mapping indicated one region that regulated resistance to both T. ni and P. xylostella herbivory. This QTL is tightly linked to the erecta locus in the Ler x Cvi RI population but is not found in Ler x Col, where erecta is also segregating. This disparity between RI populations suggests that resistance to these two insect herbivores is not caused by the erecta mutation. It is possible that this region contains a locus that imparts broad-specificity insect resistance or, alternatively, this region may contain two or more loci that independently control resistance to T. ni or P. xylostella herbivory. Fine-scale QTL mapping experiments are required to differentiate between these alternatives.
The experimental determination of the myrosinase levels, glucosinolate levels, and insect herbivory were conducted on independent plants in two different locations over a several year time span. The environments were maintained as similar as possible by utilizing the same soil type, lights, and growth chambers. However, fluctuations in the environment between the experiments could be affecting our results. However, three independent QTL mapping studies of glucosinolate concentration in the Ler x Col RI populations conducted at both sites identified the same glucosinolate concentration QTL (our unpublished results). This suggests that the major effect of the differing environments may be to diminish the correlation between the glucosinolate/myrosinase system and insect herbivory. However, final confirmation of the herbivory QTL as glucosinolate/myrosinase loci remains to be functionally verified.
A. thaliana contains significant natural genetic variation for resistance to insect herbivory. Mapping QTL responsible for resistance in RI lines allows for comparison with published QTL maps and rapid testing of plant-insect interaction models. Combining the genomics tools available in Arabidopsis with the genetic tools described in this article should allow the cloning of uncharacterized insect herbivory QTL. Finally, molecular characterization of these QTL will enhance our understanding of how plants defend themselves from insect herbivory.
| FOOTNOTES |
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1 Present address: Department of Vegetable Crops, University of California, Davis, CA 95616. ![]()
| ACKNOWLEDGMENTS |
|---|
We thank S. Dix for expert secretarial assistance. This work was supported by the Max-Planck-Gesellschaft. T.M.-O. was also supported by the U.S. National Science Foundation, grant DEB-9527725.
Manuscript received November 8, 2001; Accepted for publication February 8, 2002.
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