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Corresponding author: Victor G. Corces, The Johns Hopkins University, 3400 N. Charles St., Baltimore, MD 21218., corces{at}jhu.edu (E-mail)
Communicating editor: S. HENIKOFF
| ABSTRACT |
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Two mutant alleles of the same gene, each located in one of the two homologous chromosomes, may in some instances restore the wild-type function of the gene. This is the case with certain combinations of mutant alleles in the mod(mdg4) gene. This gene encodes several different proteins, including Mod(mdg4)2.2, a component of the gypsy insulator. This protein is encoded by two separate transcription units that can be combined in a trans-splicing reaction to form the mature Mod(mdg4)2.2-encoding RNA. Molecular characterization of complementing alleles shows that they affect the two different transcription units. Flies homozygous for each allele are missing the Mod(mdg4)2.2 protein, whereas wild-type trans-heterozygotes are able to synthesize almost normal levels of the Mod(mdg4)2.2 product. This protein is functional as judged by its ability to form a functional insulator complex. The results suggest that the interallelic complementation in the mod(mdg4) gene is a consequence of trans-splicing between two different mutant transcripts. A conclusion from this observation is that the trans-splicing reaction that takes place between transcripts produced on two different mutant chromosomes ensures wild-type levels of functional protein.
INTERALLELIC complementation refers to the restoration of the wild-type function of a gene by the combination of two different mutant alleles. Such complementation patterns, which may seem anomalous in the context of classical complementation analyses, have been the subject of very detailed studies. Fundamentally, two classes of mechanisms can account for the observations. One class explains complementation at loci whose alleles retain the ability to encode a mutant protein. Taken individually, mutant proteins do not possess the complete wild-type function of the gene, but retain part of it. The combination of two different mutant proteins can restore the wild function, each protein ensuring a part of it. A classical example is the yeast HIS4 locus, first thought to encode three different enzymes involved in histidine biosynthesis (![]()
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-Complementation of ß-galactosidase is a second example that also falls into this category (![]()
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Here we report another mechanism that accounts for interallelic complementation in the Drosophila modifier of mdg4 [mod(mdg4)] gene. This gene has coding potential for >25 different mRNAs (![]()
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| MATERIALS AND METHODS |
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Fly crosses:
All crosses were performed at 25° on yeast, cornmeal, molasses, and agar medium containing tegosept and propionic acid as mold inhibitors. Two lethal mutations, mod(mdg4)L3101 and mod(mdg4)03852, were obtained from the Bloomington Stock Center, and a third one, mod(mdg4)E(var)3-93D, was described earlier (![]()
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To analyze the effect of lethal mod(mdg4) mutations on the activity of the gypsy insulator, y2 w ct6; mod(mdg4)u1 and y2w ct6; mod(mdg4)T6 virgin females were crossed with mod(mdg4)E(var)3-93D/TM6B, mod(mdg4)03852/TM3, and mod(mdg4)L3101/TM3 males, respectively. The y2 w ct6; mod(mdg4)u1/mod(mdg4)E(var)3-93D, y2 w ct6; mod(mdg4)T6/mod(mdg4)E(var)3-93D, y2 w ct6; mod(mdg4)u1/mod(mdg4)083852, y2 w ct6; mod(mdg4)T6/mod(mdg4)083852, y2 w ct6; mod(mdg4)u1/mod(mdg4)L3101, and y2 w ct6; mod(mdg4)T6/mod(mdg4)L3101 male offspring were examined for the y2 and ct6 phenotypes and compared with the balanced mod(mdg4)/TM3 and mod(mdg4)/TM6B siblings.
Ectopic expression of the Mod(mdg4)2.2 mRNA:
A UAS-Mod(mdg4) 2.2-kb cDNA was constructed by inserting the full-length 2.2-kb cDNA (accession no. U30905) into the cloning site of the pUASp vector (![]()
2-3}/TM6 embryos, and flies carrying the transgene in the second chromosome were selected by standard procedures (![]()
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Protein immunolocalization and Western analysis:
Exons 5 and 6 of the sequence encoding Mod(mdg4)2.2 were cloned into pET30 (Novagen, Madison, WI) and the protein was expressed in E. coli as a 6x His tag fusion protein and purified on a nickel-agarose column (QIAGEN, Chatsworth, CA) under denaturing conditions. Antibodies were prepared in rats by standard procedures (Pocono Rabbit Farm & Laboratory, Canadensis, PA). Preparation of antibodies against Su(Hw) has been reported previously (![]()
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| RESULTS |
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Interallelic complementation in the mod(mdg4) locus:
Fig 1 depicts the genomic organization of the mod(mdg4) locus. The molecular lesions associated with mutations used in this study are described in MATERIALS AND METHODS and summarized in Fig 1. To dissect the genetic properties of the mod(mdg4) locus, a complementation analysis of different mutants affecting the Mod(mdg4)2.2 protein was carried out. The functionality of the protein was assessed by its effect on the gypsy insulator using two different phenotypic markers, cut-6 (ct6) and yellow-2 (y2). Both mutations are caused by the presence of the gypsy insulator between the enhancer and promoter sequences of the cut and yellow genes. In the presence of wild-type Mod(mdg4)2.2 protein, the insulator disrupts the activation of the promoter by the enhancers, resulting in the formation of severe cuts in the wing margins and the loss of abdominal pigmentation (Fig 2, a and b). The mod(mdg4)u1 and mod(mdg4)T6 mutations are viable and affect the sequences encoding the carboxy-terminal end of the Mod(mdg4)2.2 protein (Fig 1). When homozygous, these alleles result in the loss of insulator activity and reversion of the ct6 and y2 phenotypes: the wing margins show only a few notches and the abdomen pigmentation is partially restored (Fig 2C and Fig D). The three P-element-induced mutants of the mod(mdg4) gene are lethal during larval stages and, therefore, their effect on the gypsy insulator and the y2 and ct6 phenotypes cannot be assessed in homozygous adult mutant individuals. To determine the effect of these mutations on the functionality of the gypsy insulator, we tested their ability to modify the y2 and ct6 phenotypes in heterozygous combinations with mod(mdg4)u1 and mod(mdg4)T6. Surprisingly, flies of the genotype mod(mdg4)Evar3-93D/mod(mdg4)u1 display normal y2 and ct6 phenotypes, suggesting that the gypsy insulator is functionally normal in the background of this combination of mod(mdg4) alleles (Fig 2E and Fig F). The same is true for all other possible combinations between lethal and viable alleles (Fig 2G and Fig H). These results suggest that mutations affecting the Mod(mdg4)2.2 protein fall into two complementation groups. Group I comprises mod(mdg4)L3101, mod(mdg4)03852, and mod(mdg4)E(var)3-93D whereas group II consists of mod(mdg4)u1 and mod(mdg4)T6. The interallelic complementation observed when crossing group I to group II mod(mdg4) alleles is demonstrated by the restoration of strong ct6 and y2 phenotypes, suggesting the restoration of wild-type insulator function.
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The Mod(mdg4)2.2 protein rescues the mod(mdg4)u1 phenotype:
Group I mutations affect the amino-terminal region of all mod(mdg4)-encoded proteins, whereas group II mutations affect the carboxy-terminal region of the Mod(mdg4)2.2 protein. Since group II mutations are the only ones that can be shown to have an effect on the gypsy insulator, it is possible that only the Mod(mdg4)2.2 protein is involved in gypsy insulator function. To demonstrate that the Mod(mdg4)2.2 protein is not only necessary but also sufficient for insulator function we tested whether it can rescue the activity of the gypsy insulator in a mod(mdg4)u1 background. We established transgenic flies carrying the full-length Mod(mdg4)2.2 cDNA under the control of the GAL4 transcriptional activator. These flies also express GAL4 under the control of an actin gene promoter that can drive transcription in all tissues of the fly. This binary system provides constitutive expression of the transgene. Transgenic individuals with a y2 ct6; mod(mdg4)u1 genotype that express the Mod(mdg4)2.2 protein show y2 and ct6 phenotypes, suggesting that the gypsy insulator is functional (Fig 2I and Fig J). This result clearly indicates that the Mod(mdg4)2.2 protein is sufficient to rescue the mod(mdg4) function in a mod(mdg4)u1 mutant. This construct does not rescue lethality of the group I alleles, indicating that additional products of the mod(mdg4) locus are required for viability.
Immunolocalization of the Mod(mdg4)2.2 protein upon interallelic complementation:
Combination of class I and class II complementing alleles restores normal insulator function. Since the Mod(mdg4)2.2 protein appears to be necessary and sufficient for the activity of the gypsy insulator, we tested whether Mod(mdg4)2.2 protein is present at insulator sites in polytene chromosomes from third instar larvae carrying two complementing alleles. To this purpose, an antibody specific to exons 5 and 6 of Mod(mdg4)2.2 was produced. It has been previously shown that a functional insulator complex requires the Su(Hw) protein to bind to the insulator sequence and recruit Mod(mdg4)2.2 (![]()
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Expression of a normal Mod(mdg4)2.2 protein upon interallelic complementation:
To further identify the mechanism leading to the observed interallelic complementation and to verify that the Mod(mdg4)2.2 protein synthesized in flies carrying a combination of complementing alleles is the same as in wild-type flies, Western analyses were performed using antibodies specific for this protein. Wild-type pupae produce an abundant protein of 115 kD and a minor protein of 86 kD; a second minor protein of 150 kD recognized by the antibody might not be encoded by mod(mdg4), since it is not affected by mutations in this gene (Fig 4A). Wild-type larvae produce the same abundant 115-kD protein but the 86-kD product is synthesized at higher levels (Fig 4B). Mutations in mod(mdg4)u1 affect the accumulation of the 115- and 86-kD proteins in both larvae and pupae (Fig 4, a and b). Although the three P-element mutants behave similarly in the complementation analysis, mod(mdg4)03852 and mod(mdg4)Evar3-93D carry P-element insertions in an intron and might produce low levels of the wild-type protein by splicing of P-element sequences. Consequently, we chose to analyze the mod(mdg4)L3101 mutant that carries the P element in the third exon for its effect on the expression of the Mod(mdg4)2.2 protein. Because this mutation is lethal, only early larvae could be analyzed. As expected, the Mod(mdg4)2.2 protein is absent from mod(mdg4)L3101 homozygous first instar mutant larvae (Fig 4B). A weak smear is detected instead of the sharp band normally found in the wild-type larvae. This residual signal may arise from either degraded maternally provided proteins or from aberrant, low-abundance products of the mutant gene. A striking result was observed when analyzing the protein content of pupae of the genotype mod(mdg4)u1/mod(mdg4)L3101, a stage during which the yellow and cut genes are expressed. The Mod(mdg4)2.2 protein, absent from mutant individuals homozygous for either allele, is present at almost normal levels in pupae (Fig 4A). These results suggest that interallellic complementation between the two mutant alleles is accomplished by synthesizing the normal Mod(mdg4)2.2 protein.
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| DISCUSSION |
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It has been previously shown that different exons of the Mod(mdg4)2.2 mRNA can be encoded by sequences present in opposite strands of the gene (![]()
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The interallelic complementation mechanism we report here is different from those previously described. Interallelic complementation between mutations affecting the coding region of the gene has been observed when each allele is affected in only one of two separate functional domains of a multifunctional protein. Two alleles, each deficient in a different domain, may complement each other. Such a complementation mechanism requires the production of abnormal proteins by the mutant loci. This is not the case for mod(mdg4), as assessed by Western blots and in situ immunodetection. The complementation observed here has its molecular origin in the cell's ability to produce a wild-type RNA by combining information present in two mutant transcripts. A trans-splicing event is most probably involved in the production of the final Mod(mdg4)2.2 mRNA. How trans-splicing is integrated with transcription and pre-mRNA processing reactions remains to be addressed. Abundant evidence suggests that transcription and processing of the mRNA are coordinated nuclear events. For example, splicing factors are recruited to the sites of transcription by RNA polymerase II. Similarly, mRNA capping and polyadenylation seem to occur right at the transcription site (for recent reviews, see ![]()
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It remains an open question whether a physiologically significant number of trans-splicing events are possible when the transcripts involved are produced at distant nuclear locations. It has been recently shown that two transcripts, one produced by the normal mod(mdg4) gene and a second one by a transgene inserted elsewhere in the genome, may be combined, presumably by trans-splicing (![]()
| ACKNOWLEDGMENTS |
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This work was supported by U.S. Public Health Service Award GM-35463 from the National Institutes of Health. F.M. was supported by a grant from the Association pour la Recherche contre le Cancer.
Manuscript received November 14, 2001; Accepted for publication January 14, 2002.
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