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Dimorphic Mating-Type Chromosomes in the Fungus Microbotryum violaceum
Michael E. Hoodaa Department of Biology, University of Virginia, Charlottesville, Virginia 22903
Corresponding author: Michael E. Hood
Communicating editor: M. E. ZOLAN
| ABSTRACT |
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Fungi often mate as haploids, and sex chromosomes (i.e., mating-type chromosomes) that are dimorphic for their size or overall DNA content have never been reported in this kingdom. Using electrophoretic techniques for karyotype analysis, a highly dimorphic chromosome pair that determines mating compatibility is shown to occur in populations of the fungus Microbotryum violaceum. This substantiates the evolution of such dimorphism as a general feature associated with haploid determination of mating compatibility, which previously had been known only in haplodioecious plants (mosses and liverworts). Size-dimorphic sex chromosomes are present in a lineage of M. violaceum native to Europe, as well as a lineage native to North America. However, they are very different in size between these lineages, indicating either independent evolution of the dimorphism or a large degree of divergence since their isolation. Several DNA sequences that show sequence similarity to transposons were isolated from these sex chromosomes.
SEX chromosomes can be defined as those that determine mating compatibility and that often have patterns of inheritance and cytological features distinct from autosomes. While cogent evolutionary theories can explain the origin of highly dimorphic sex chromosomes in diploid-mating organisms (![]()
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When mating compatibility is determined in the haploid stage, the sex chromosomes are equally heterozygous and therefore equally sheltered in the diploid stage. If degeneration occurs it should be symmetrical between them (![]()
In spite of these potential limitations on the evolution of sex chromosomes, such dimorphism occurs in many mosses and liverworts, where mating compatibility is expressed in the predominant haploid stage of the life cycle. In fact, the first report of sex chromosomes in plants was in the liverwort Sphaerocarpus (![]()
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| MATERIALS AND METHODS |
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Study system and sampling:
M. violaceum is an obligately sexual basidiomycete fungus that causes anther-smut disease in many plant species of the Caryophyllaceae, particularly of the genus Silene (![]()
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The current state of species identification in the genus Microbotryum is incomplete, but studies indicate that some collections from different hosts represent cryptic species (![]()
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Populations of M. violaceum were sampled from infected Silene latifolia at the following localities (the number of tetrads isolated per population is in parentheses): United Kingdom, Aldeburgh (2), Ipswich (1), Hungerford (2); Italy, Lamole (8), San Gimignano (2), Antrodoco (1); France, Orsay (1); Germany, Darmstadt (1); Switzerland, Oetwil (1); Czech Republic, Olomouc (1); and the United States, Virginia: Giles County (5), Albemarle County (1), Rockingham County (8), Shenandoah County (2). Native North American populations of Microbotryum on S. caroliniana were sampled in Virginia, Princess Anne County (1), Amherst County (2); Kentucky, Jessamine County (1), Anderson County (6); and North Carolina, Franklin County (4). Samples were kept under desiccation prior to the isolation of tetrads. Once isolated by micromanipulation, the haploid meiotic products were placed in long-term storage (frozen under desiccation) and are available over the web at http://www.people.virginia.edu/~meh2s/tetradcollection.htm.
Electrophoretic karyotype analysis:
A CHEF-DR II system (Bio-Rad, Hercules, CA) was used to generate karyotypes by pulsed-field gel electrophoresis. Haploid cell cultures were suspended into agarose plus without generating protoplasts (![]()
Mating-type-specific DNA sequences:
Linear tetrads of samples from the Hungerford and Giles County populations were subjected to amplified fragment length polymorphism (AFLP) analysis, and AFLP products were identified that consistently cosegregated with mating type across four meioses. The protocol and primers were similar to those described in ![]()
Because the source of DNA for each reaction is a haploid product of meiosis, AFLPs served as codominant markers. AFLP products of interest were isolated from agarose gels and sequenced using the AFLP primers. The sequences were then compared to the databases at the National Center for Biotechnology Information using the BLASTx algorithm (http://www.ncbi.nlm.nih.gov).
The sequences were also used to generate mating-type-specific primers that were internal to the AFLP-derived sequences. Such oligo sequences used as primers in this study were 5'-CTTCGGAATAACGAGAAGGC-3' and 5'-AGGTATGAGCAGTGGATCGG-3', a single primer pair producing unequal-sized fragments in each mating type due to indels in the nonrecombining region. Across samples from all countries, there was no evidence of recombination between this size-specific PCR marker and the mating-type locus. Individual chromosome bands from the electrophoretic karyotypes were excised and treated with restriction enzymes (XhoI and MspI) prior to DNA extraction from the agarose gel (QIAGEN, Valencia, CA). These were the same restriction enzymes used for genomic digestion in the AFLP analysis, thus facilitating DNA extraction but avoiding restriction sites in the target sequence. The mating-type-specific primers were then used to determine which karyotype bands contained the target DNA sequences.
| RESULTS |
|---|
Sex chromosomes in M. violaceum were identified by the cosegregation of mating type and chromosome dimorphism and by mating-type-specific markers. In M. violaceum from European and introduced North American populations of S. latifolia, one pair of dimorphic chromosomes exhibited consistent cosegregation with mating type across 36 tetrads (Fig 1). The identity of the sex chromosomes was confirmed using mating-type-specific PCR primers. These primers amplified only target DNA in the isolated dimorphic pair of chromosomes and showed no amplification in any of the other isolated chromosomes (Fig 2). DNA content of the A1 chromosome of M. violaceum from S. latifolia ranges from 2.8 to 3.1 Mbp in length, while the A2 chromosome is substantially larger, ranging from 3.4 to 4.2 Mbp. The sex chromosomes are among the largest in the genome with only one autosome in the same size range. Other autosomes range from 1.0 to 2.6 Mbp, and the number of chromosomes in the karyotypes varies from 11 to 13 depending on the population.
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The sex chromosomes were similarly identified in the North American lineage of M. violaceum on the native host species S. caroliniana. Again, consistent cosegregation of size dimorphism and mating type across 14 tetrads showed that the A2 sex chromosome is larger than the A1. However, the sex chromosomes, ranging from 2.2 to 2.7 Mbp in length, are intermediate in size relative to the rest of the karyotype. The autosomes numbered from 9 to 13 pairs and ranged in size from 1.3 to 3.5 Mbp.
Within each lineage of M. violaceum from S. latifolia, distributed across the host's natural range in Europe and from introduced populations of S. latifolia in North America, overall karyotype patterns are conserved but the size and the degree of dimorphism between the sex chromosomes varies at the regional scale (Fig 3).
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The DNA sequences of 20 mating-type-linked AFLP products were obtained, 9 on the A2 chromosome and 11 on the A1. Of these, 4 were sequences similar to known retroelements in other organisms and 1 was similar to helicase, which is known to be involved in Ty1 transposition in yeasts (![]()
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| DISCUSSION |
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Alleles at the mating-type loci of fungi often differ to the extent that there is no sequence similarity between them (![]()
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In support for this process, or at least for the potential action of transposons in M. violaceum, such elements are easily identified among DNA sequences linked to mating type. The suppression of recombination near the mating-type loci of fungi (![]()
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Molecular studies of mating factors in fungi reveal similarities to hypothesized proto-X and proto-Y chromosomes (i.e., suppressed recombination and sequence dissimilarity; ![]()
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| ACKNOWLEDGMENTS |
|---|
I thank Janis Antonovics for advice and discussion, Doug Taylor and Miriam Heuhsen for collecting samples, and Hilary Heishman and Cathy Arnette for technical assistance.
Manuscript received July 25, 2001; Accepted for publication November 9, 2001.
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