Kauer et al. APPENDIX

TABLE A1 List of all microsatellite loci
Population	Locus	Heterozygosity	Variance in repeat number	Mean repeat number	Adjusted recombination rate  (x 10-8)1	Cyt. Location2
Africa	x506493gt	0.81	5.46	10.73	0	1c
Africa	X651868ca	0.79	9.19	9.90	0	1c
Africa	x728937ca	0.74	2.26	10.80	0	1d
Africa	x742605gt	0.69	4.76	10.08	0	1d
Africa	X750934gt	0.90	17.54	12.99	0	1d
Africa	x884191ga	0.77	3.55	12.03	0.05	1e
Africa	x986182gt	0.72	9.17	7.88	0.03	1f
Africa	56G7-AC	0.25	0.96	10.35	0.09	2B
Africa	56G7-AT	0.70	3.83	10.86	0.09	2B
Africa	x1481559gt	0.81	3.22	10.80	0.1	2b
Africa	X1721159gt	0.80	6.87	11.11	0.21	2c
Africa	X1883543gt	0.68	0.81	11.83	0.32	2d
Africa	x2052732ca	0.80	2.06	10.02	0.54	2f
Africa	DS01001	0.79	15.69	8.96	0.86	3A
Africa	X2297267gt	0.75	6.86	9.12	0.86	3a
Africa	1296/1297	0.63	2.27	10.53	1.06	3b
Africa	56g7-ag-f	0.72	1.06	9.67	0.95	3B
Africa	x2571651gt	0.91	18.22	13.02	1.06	3b
Africa	66-95-3	0.72	5.90	5.37	1.63	3c
Africa	95B7-AT	0.63	1.88	7.45	1.47	3c
Africa	95B7-TC	0.78	5.11	10.91	1.47	3c
Africa	95B7-TG	0.78	3.04	9.70	1.47	3c
Africa	DS06335a	0.89	26.36	14.17	1.63	3C
Africa	DS00036	0.75	7.08	9.74	2.37	4A
Africa	DS00146	0.79	8.70	10.04	2.37	4A
Africa	DS04440	0.79	24.62	9.17	1.63	6e
Africa	81C6	0.73	1.00	10.50	0.89	7d
Africa	DS09021	0.87	14.17	11.74	1.63	8B
Africa	Dm2004-TA	0.86	5.16	8.95	2.18	8d
Africa	DS01391	0.63	8.66	10.31	2.12	9a
Africa	DS01551	0.86	12.10	9.79	2.29	10d
Africa	DS09020	0.90	24.97	7.94	2.09	15A
Africa	DS00265a	0.73	3.18	12.18	1.61	16a
Africa	DS00265b	0.72	2.78	4.97	1.79	16A
Africa	1397/1398	0.76	15.34	10.90	1.07	19e
Africa	x21100995gt	0.52	0.65	9.85	0.89	19f
Africa	x21147800gt	0.64	3.89	10.32	0.89	19f
Africa	x21297264gt	0.87	11.13	13.64	0.89	19f
Africa	X21300817ta	0.89	37.33	10.30	0.68	20a
Africa	x21408452ta	0.77	1.55	8.10	0.48	20b
Africa	Eno-CA	0.65	2.23	8.06	1.45	22A
Africa	Eno-TA	0.45	1.01	7.64	1.45	22A
Africa	Eno-TC	0.00	0.00	7.75	1.45	22A
Africa	Z50409	0.58	4.43	7.11	1.59	22B
Africa	Pkg-GT	0.68	17.73	10.00	1.85	23A
Africa	Pkg-TA	0.84	2.27	7.58	1.85	23A
Africa	Pkg-TC	0.74	6.47	9.55	1.85	23A
Africa	DS01340	0.53	3.39	9.17	2.04	24A
Africa	Dm0600-CA	0.64	5.24	9.47	2.08	24C
Africa	Dm0600-TA	0.47	2.53	11.95	2.08	24C
Africa	Dm0600-TC	0.88	14.94	8.79	2.08	24C
Africa	ft-CA	0.72	6.34	7.04	2.12	24E
Africa	ft-TA	0.18	0.09	7.10	2.12	24E
Africa	ft-TC	0.88	16.06	10.29	2.12	24e
Africa	Drogpdha	0.66	5.83	7.05	2.2	25f
Africa	DS00168	0.31	2.09	8.91	2.2	26A
Africa	Dm2337	0.85	21.96	14.15	2.2	27A
Africa	Droninac	0.33	0.56	9.81	2.18	28A
Africa	su.var	0.76	9.10	11.70	2.15	29A
Africa	DS08088	0.86	23.85	11.64	2.14	29C
Africa	Dm0332-TC	0.46	0.49	6.97	2.12	29F
Africa	DS01054	0.13	4.18	7.07	2.11	30A
Africa	DS03018	0.47	1.15	7.75	2.11	30A
Africa	G410	0.85	50.69	9.82	1.58	33e
Africa	Adh-TA	0.53	0.66	8.33	1.11	35B
Africa	Adh-TC	0.56	6.94	8.81	1.11	35B
Africa	Adh-TG	0.71	0.74	11.37	1.11	35B
Africa	D6744	0.36	0.78	8.06	0.97	35e
Africa	cact-TA	0.80	6.49	8.13	0.91	35F
Africa	cact-TC	0.39	1.00	7.88	0.91	35f
Africa	cact-TG	0.44	0.25	6.84	0.91	35F
Africa	DS00762	0.28	2.58	6.89	0.43	37B
Africa	DS09065/1	0.86	13.53	13.23	0.35	37f
Africa	Dm0332-CA	0.31	1.45	9.02	0.19	38B
Africa	Dm0332-TA	0.81	0.58	8.73	0.19	38B
Africa	Cad-CA	0.65	5.34	11.07	0.11	38d
Africa	Cad-GA	0.69	1.36	11.22	0.11	38D
Africa	Cad-TA	0.66	1.76	9.83	0.11	38D
Africa	DS07289	0.42	0.99	7.91	0	41e
Africa	tor	0.43	6.27	12.60	0.04	43B
Africa	tor-GT	0.78	3.21	10.57	0.04	43B
Africa	tor-TA	0.63	3.21	9.01	0.04	43B
Africa	tor-TC	0.42	0.50	7.47	0.04	43B
Africa	D5915	0.70	29.74	10.75	0.27	44d
Africa	Drogpad	0.84	19.48	9.08	0.72	47A
Africa	Dmmp20	0.68	28.01	9.30	1.11	49f
Africa	Dm0620	0.68	2.65	8.85	1.12	51e
Africa	DS00541	0.63	1.19	10.03	1.07	52C
Africa	Pkc53E-CA	0.62	2.17	7.34	0.95	53D
Africa	Pkc53E-GA	0.87	5.85	11.20	0.95	53D
Africa	Pkc53E-TA	0.38	0.94	6.87	0.95	53D
Africa	DS00361c	0.74	6.40	7.04	0.84	54B
Africa	DS00144	0.10	0.43	7.93	0.74	55A
Africa	Ote-CA	0.87	5.71	10.93	0.74	55A
Africa	Ote-GA	0.79	3.51	9.00	0.74	55A
Africa	Ote-TA	0.50	0.31	7.09	0.74	55A
Africa	Dpt-GT	0.59	2.31	8.05	0.63	55F
Africa	Dpt-TA	0.86	4.75	6.82	0.63	55F
Africa	Dpt-TC	0.05	0.55	8.98	0.63	55f
Africa	Dm1639-CA	0.72	10.81	12.66	0.62	58B
Africa	Dm1639-TA	0.63	0.72	8.35	0.62	58B
Africa	Dm1639-TC	0.72	1.13	8.46	0.62	58B
Africa	Z31849	0.22	3.08	9.56	0.62	58C
Africa	G411	0.07	0.11	6.04	0.63	58d
Africa	DS08011	0.80	13.82	8.41	0.64	59A
Africa	3L500820gt	0.80	8.61	7.75	0.34	61C
Africa	AprtBZ	0.75	5.31	14.02	0.76	61f
Africa	Mdr	0.78	15.61	12.53	2.45	64e
Africa	3L12139804gt	0.80	1.25	9.96	1.7	68f
Africa	3L13408501ca	0.87	10.59	11.58	1.36	70b
Africa	3L13844712ga	0.72	4.45	11.77	1.28	70c
Africa	3L14197261ta	0.68	7.54	10.26	1.22	70d
Africa	3L15290185ca	0.76	6.37	12.06	1.04	71b
Africa	3L15443860ca	0.74	3.62	11.21	0.94	71e
Africa	3L16575599gt	0.86	28.47	11.22	0.61	73c
Africa	3L17166925ca	0.85	10.35	11.00	0.47	74c
Africa	3L17067764gt	0.75	6.02	9.99	0.44	74d
Africa	3L17555891ct	0.80	5.33	10.14	0.42	74e
Africa	3L18033782ga	0.87	12.07	11.27	0.3	75c
Africa	3L18673367ga	0.90	7.38	13.34	0.28	75d
Africa	3L19131867ta	0.82	2.44	10.02	0.19	76b
Africa	3L19781432ct	0.74	4.05	13.10	0.13	76e
Africa	3L20028475ca	0.80	5.54	10.24	0.11	77a
Africa	3L21099506ca	0.77	14.57	8.70	0.02	78c
Africa	3L21309672gt	0.81	5.48	11.67	0.02	78d
Africa	3L21961365ca	0.65	13.78	10.31	0	79c
Africa	3L22168867ca	0.79	18.06	4.64	0	79d
Africa	3L22184535ga	0.54	0.32	10.65	0	79d
Africa	3L22333141gt	0.71	6.11	12.60	0	79e
Africa	Antp-GT	0.02	0.03	7.96	0.12	84A
Africa	Antp-TA	0.49	0.32	6.76	0.12	84A
Africa	Antp-TC	0.17	0.21	10.60	0.12	84A
Africa	AntpBZ	0.38	1.23	13.48	0.12	84A
non-Africa	x506493gt	0.16	0.33	9.95	0	1c
non-Africa	X651868ca	0.57	3.85	11.47	0	1c
non-Africa	x728937ca	0.45	0.68	11.52	0	1d
non-Africa	x742605gt	0.48	2.05	12.75	0	1d
non-Africa	X750934gt	0.25	0.60	14.00	0	1d
non-Africa	x884191ga	0.29	0.19	9.98	0.05	1e
non-Africa	x986182gt	0.08	0.21	10.98	0.03	1f
non-Africa	56G7-AC	0.08	0.45	9.88	0.09	2B
non-Africa	56G7-AT	0.45	1.15	9.50	0.09	2B
non-Africa	x1481559gt	0.18	0.35	11.78	0.1	2b
non-Africa	X1721159gt	0.15	0.36	10.04	0.21	2c
non-Africa	X1883543gt	0.39	0.86	11.71	0.32	2d
non-Africa	x2052732ca	0.08	1.07	10.93	0.54	2f
non-Africa	DS01001	0.40	0.20	9.02	0.86	3A