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Corresponding author: Yona Kassir, Department of Biology, Technion, Technion City, Haifa 32000, Israel., ykassir{at}tx.technion.ac.il (E-mail)
Communicating editor: B. J. ANDREWS
| ABSTRACT |
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In the budding yeast Saccharomyces cerevisiae initiation and progression through the mitotic cell cycle are determined by the sequential activity of the cyclin-dependent kinase Cdc28. The role of this kinase in entry and progression through the meiotic cycle is unclear, since all cdc28 temperature-sensitive alleles are leaky for meiosis. We used a "heat-inducible Degron system" to construct a diploid strain homozygous for a temperature-degradable cdc28-deg allele. We show that this allele is nonleaky, giving no asci at the nonpermissive temperature. We also show, using this allele, that Cdc28 is not required for premeiotic DNA replication and commitment to meiotic recombination. IME2 encodes a meiosis-specific hCDK2 homolog that is required for the correct timing of premeiotic DNA replication, nuclear divisions, and asci formation. Moreover, in ime2
diploids additional rounds of DNA replication and nuclear divisions are observed. We show that the delayed premeiotic DNA replication observed in ime2
diploids depends on a functional Cdc28. Ime2
cdc28-4 diploids arrest prior to initiation of premeiotic DNA replication and meiotic recombination. Ectopic overexpression of Clb1 at early meiotic times advances premeiotic DNA replication, meiotic recombination, and nuclear division, but the coupling between these events is lost. The role of Ime2 and Cdc28 in initiating the meiotic pathway is discussed.
SACCHAROMYCES cerevisiae cells induced for meiosis can return to the mitotic cell cycle during and following completion of premeiotic DNA synthesis (![]()
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Progression through the mitotic cell cycle is regulated by the successive activation of a single cyclin-dependent kinase (CDK), Cdc28, by the G1 (Cln13) and the B-type (Clb16) cyclins (for review see ![]()
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IME2 encodes a meiosis-specific protein kinase that shows 58.9% similarity and 37% identity to the human cyclin-dependent kinase hCDK2 (![]()
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We reexamine the role of Cdc28 in promoting premeiotic DNA replication, using the heat-degradable Cdc28-Degron protein (![]()
arrests at 34° prior to premeiotic DNA replication, whereas at 25° these cells are proficient in both premeiotic DNA replication and commitment to recombination. We show that early expression of Clb1 in ime2
diploid cells leads to premature initiation of premeiotic DNA replication, meiotic recombination, and nuclear division. The role of Cdc28 and Ime2 in the initiation of premeiotic DNA replication is discussed.
| MATERIALS AND METHODS |
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Strains:
The relevant genotype of strains is given in Table 1. All strains used are isogenic and based on the mating of MATa and MAT
derivatives. For Y1314, the CDC28 allele in the parental haploids of this strain was replaced by the pCUP1-UBI-DHFRts-HA-CDC28 allele following transformation with pPW66R (![]()
pCUP1-UBI-DHFRts-HA-CDC28 derivative. For Y752, the IME2 allele in the parental haploids of this strain was replaced by the ime2
::LEU2 as previously described (![]()
::URA3 following transformation with P1930 digested with SspI.
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Plasmids:
pPW66R carries pCUP1-UBI-DHFRts-HA-5'cdc28 on a URA3 vector (![]()
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Media and genetic techniques:
PSP2 (minimal acetate medium) and SPM (sporulation medium) have been described (![]()
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Antibodies:
Mouse monoclonal antibodies directed against the hemagglutinin (HA) epitope (12CA5) were purchased from Boehringer Mannheim (Mannheim, Germany). Rabbit polyclonal antibodies directed against Cdc2 (PSTAIRE) were purchased from Santa Cruz Biotechnology.
Preparation of yeast protein extracts and Western analysis:
Protein extracts were prepared from trichloroacetic acid-treated cells as described previously (![]()
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Immunoprecipitation and in vitro kinase assay:
These methods were applied essentially as described by ![]()
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-32P]ATP (6000 Ci/mmol; New England Nuclear, Boston) were added, and the reaction mix was incubated at room temperature (
22°) for 1 hr. Reactions were terminated by the addition of an equal volume of elution buffer (125 mM Tris pH 6.8, 10% ß-mercaptoethanol, 4% SDS, 20% glycerol, 25 mM EDTA, and 46% urea). Proteins were separated from the radioactive ATP on P-6 micro-bio-spin chromatography columns (Bio-Rad, Richmond, CA). Following the addition of the sample buffer, proteins were separated on SDS-PAGE. The gel was dried and exposed to X-ray film.
Fluorescence-activated cell sorter analysis:
Cells were analyzed for DNA content by fluorescence-activated cell sorter (FACS) analysis as previously described (![]()
4',6-Diamidino-2-phenylindole staining:
Cells were prepared and stained as described (![]()
| RESULTS |
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High levels of Cdc28 are required in the mitotic cycle preceding meiosis:
As described above, the evidence indicating that Cdc28 is not required for premeiotic DNA replication is based on the use of temperature-sensitive mutations in CDC28 that are leaky for meiosis. The "heat-inducible Degron system" provides an alternative method for constructing temperature-degradable alleles (![]()
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The availability of Cdc28 in the homozygous cdc28-deg strain is also subject to transcriptional regulation; its expression is induced by copper sulfate. Incubation with copper sulfate was not required for cell growth, although microscopic analysis revealed that cells grown without copper sulfate were large, with an elongated bud (data not shown). Western analysis revealed that the steady-state level of Cdc28-deg was reduced dramatically in the absence of the inducer (Fig 1A, compare lanes 1 and 2). Pregrowth without the inducer reduced the level of sporulation 12% compared to 21% (Table 2, compare lines 1 and 3). In both cases copper sulfate was added to the sporulation media, and consequently a high level of Cdc28 was attained [data not shown; Fig 1A (lane 7) and B (lane 10), shows the level and activity, respectively, of Cdc28 in SPM following 2 hr induction with copper sulfate]. We conclude, therefore, that proper entry into the meiotic cycle depends on the presence of sufficient levels of active Cdc28 under the pregrowth conditions. When copper sulfate was also omitted from SPM, the level of sporulation did not decline, but the level of four-spored asci declined, and cells formed mainly two-spored and one-spored asci (Table 2, compare lines 3 and 4). This result suggests that high levels of Cdc28 in meiosis are required to promote two meiotic divisions. In agreement, Western analysis, using antibodies directed against the PSTAIRE sequence in CDKs, revealed a constitutive level of Cdc28 throughout the meiotic pathway of a wild-type diploid (Y422; Fig 1C).
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To promote an immediate degradation of Cdc28 at the nonpermissive temperature, such that the presence of the protein at early meiotic times would be precluded, in the experiments reported below cells were grown without copper sulfate. Following 2 hr incubation at 34° Cdc28 was not detected in cells incubated under either vegetative or meiotic conditions (Western analysis, Fig 1A, lanes 3, 5, 6, and 8). A more sensitive method for detecting Cdc28 is to determine its in vitro activity as a kinase on proteins that coimmunoprecipitate with it, as well as on a supplemented substrate, such as histone H1. Fig 1B shows phosphorylation of specific proteins that depends on the presence of the HA-tagged Cdc28 (Fig 1B, compare lanes 1 and 2). The phosphorylated histone H1 protein was identified by comparing reactions with and without histone H1 (Fig 1B, compare lanes 2 and 3). The assay identified a specific substrate of Cdc28 with apparent molecular weight of
40 kD (marked with an asterisk), probably Sic1 (![]()
Previously it was reported that efficient and immediate degradation of Cdc28-deg occurs at 37° (![]()
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Cdc28 is not required for premeiotic DNA replication and meiotic recombination:
FACS analysis revealed that following 2 hr incubation at 37° vegetative diploid cells homozygous for cdc28-deg arrested at G1, with a 2C DNA content (Fig 3A and Fig 4B, time 0). These arrested cells were transferred to a sporulation medium and incubated at either 25° or 34°. At both the permissive and nonpermissive temperatures, premeiotic DNA replication took place (Fig 3A). Quantitative analysis of the results presented in Fig 3 revealed that in the absence of any Cdc28 activity DNA replication was initiated at the same time (between 4 and 6 hr in SPM) at both the permissive and nonpermissive temperatures (Fig 4B). At 10 hr in SPM, 67% of the cells incubated at 25° had a 4C DNA content, whereas at 34°, 39% had a 4C DNA content, reaching a maximum of 41.5% at 12 hr (Fig 4B). At 24 hr in SPM, at both temperatures, cells with 4C as well as with 2C DNA content were observed (Fig 3A), suggesting that DNA replication was either not complete or totally absent in a fraction of the cells. As a control, the same protocol was applied for the heterozygote isogenic strain. The 2-hr incubation at 37° did not cause cell cycle arrest (Fig 3B). When these cells were shifted to SPM and incubated at 34°, cells completed the mitotic cycle, and, at 2 hr, most cells had a 2C DNA content. At 4 hr, premeiotic DNA replication was initiated, and at
12 hr it was completed. Only a small fraction of cells remained in G1 (Fig 3B and Fig 4B).
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Depletion of Cdc28 was deleterious, causing a gradual loss of the ability of cells to form colonies when plated on YEPD supplemented with copper sulfate and incubated at 25° (Fig 4A). This decrease in viability was independent of growth conditions: A similar decrease was observed for cells incubated in synthetic acetate or SPM (Fig 4A). Moreover, a similar loss of viability was observed for cells incubated in SPM at either 25° or 34° (Fig 4A). By contrast, the heterozygote CDC28/cdc28-deg strain did not lose viability when subjected to the same procedure (Fig 4A), indicating that the loss of Cdc28 rather than the temperature was responsible for this effect. Unlike the cdc28-deg allele, in the cdc28-ts alleles a shift to the nonpermissive temperature causes a reversible cell cycle arrest at G1, without any loss of viability (![]()
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Meiotic recombination is completely dependent on DNA replication and can be assayed even in cells that do not complete meiosis (![]()
The role of Ime2 in promoting initiation of premeiotic DNA replication:
The above results imply either that Cdc28 is not required for initiation of premeiotic DNA replication or that, in its absence, another kinase promotes this process. Sequence homology between IME2 and hCDK2 suggests that Ime2 might be the kinase that promotes the initiation of premeiotic DNA replication in the absence of Cdc28. The involvement of Ime2 in the initiation of premeiotic DNA replication is evident from the observation that in diploid cells deleted for IME2 premeiotic DNA replication is delayed and a second round of DNA replication occurs at late meiotic times (![]()
Isogenic cdc28-4 (Y1094) and ime2
cdc28-4 (Y1100) diploid cells grown in PSP2 to 1 x 107 cells/ml were shifted to SPM and incubated at either 25° or 34°. At various times samples were taken to measure DNA content. As reported, cdc28-4 cells enter and progress through the premeiotic S-phase at both 25° and 34° (![]()
cdc28-4, premeiotic DNA replication took place only at the permissive temperature (Fig 5). At 25°, this mutant exhibited the same phenotypes as reported for the single ime2
diploid strain incubated at either 25° or 34° (![]()
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At both temperatures completion of the mitotic cycle, which occurred upon nitrogen depletion, was defective, as is evident from the presence of cells with 4C DNA content throughout the early meiotic times (210 hr in SPM; Fig 5). At 34° this peak persisted, although its level declined at late meiotic times (20 hr and onward; Fig 5). Since the isogenic ime2
diploid is certainly capable of responding to SPM and accumulating in G1 (data not shown and ![]()
To confirm the conclusion that both Cdc28 and Ime2 can promote premeiotic DNA replication, we determined the level of intragenic meiotic recombination at ADE2 in the cdc28-4 (Y1094) and ime2
cdc28-4 (Y1100) isogenic diploids. The frequency of ADE+ prototrophs was increased in the same manner, and to the same extent, in cdc28-4 cells incubated at 25° or 34°, as well as in ime2
cdc28-4 cells incubated at 25° (Fig 6). However, in the latter strain, at 34°, the level of ADE+ prototrophs did not increase significantly (Fig 6). We conclude that meiotic recombination is completely dependent on the function of at least one of these proteins, either Cdc28 or Ime2, although neither one of them is essential for commitment to meiotic recombination (Fig 4C and ![]()
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As noted above, Cdc28 and Ime2 can promote premeiotic DNA replication. Still, it is not clear why, in the absence of Ime2, premeiotic DNA replication takes place with a substantial delay (Fig 5 and ![]()
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diploid cells. Early expression of a B-type cyclin was accomplished by fusing CLB1 to the IME1 promoter. The decision to express cyclin Clb1 rather than Clb5, which is required for entry into premeiotic DNA replication (![]()
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An ime2
diploid strain (Y752) or a transformant carying pIME1-CLB1 on a 2µ plasmid (YEp2053) was shifted to sporulation conditions. At various times samples were taken to study the following meiotic events: (1) completion of the mitotic cell cycle, which was determined by measuring the percentage of budded cells (Fig 8A); (2) DNA replication, which was determined by FACS analysis (Fig 7 and Fig 8B); (3) intragenic meiotic recombination, which was determined by plating on -ADE and YEPD (Fig 8C); and (4) nuclear division, which was determined by 4',6-diamidino-2-phenylindole (DAPI) staining and microscopic analysis (Fig 8D). All the meiotic parameters examined, namely, DNA synthesis, meiotic recombination, and nuclear division, were advanced in the ime2
diploid strain expressing Clb1 from the IME1 promoter in comparison to cells expressing only the endogenous CLB1 (Fig 7 and Fig 8). We conclude, therefore, that in ime2
cells Cdc28 is activated at late meiotic times and that this activation is responsible for the delayed premeiotic DNA synthesis occurring in ime2
diploid cells. Careful examination of the results demonstrates that ectopic overexpression of Clb1 in cells starved for nitrogen leads to uncoupling between DNA synthesis and cell division. Upon becoming nitrogen depleted, wild-type, as well as ime2
, diploid cells complete DNA replication and mitotic division and accumulate as unbudded cells with 2C DNA content (Fig 7, Fig 8A and Fig B, and ![]()
diploid cells nuclear division follows meiotic recombination (Fig 8 and ![]()
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| DISCUSSION |
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Cdc28 is not essential for initiation of premeiotic DNA replication:
In this report, using a nonleaky temperature-degradable CDC28 allele (cdc28-deg), we determined the requirement of Cdc28 for initiation and progression through meiosis. We showed that although Cdc28 is completely required for asci formation (Table 2), cells deprived of Cdc28 can enter the meiotic cycle; i.e., these cells initiate and progress through both premeiotic DNA replication and meiotic recombination (Fig 3 and Fig 4). To ensure that undetectable remainders of Cdc28 were not responsible for promoting entry into the meiotic cycle, we used severe conditions. Cells were grown without copper sulfate and incubated at 37° for 2 hr prior to the shift to the meiotic conditions at either 25° or 34°. Two criteria were used to determine the complete degradation of Cdc28: Western analysis and Cdc28 kinase activity (Fig 1 and Fig 2). Under these conditions, vegetative cultures did not enter S-phase. Our results confirm previous reports that were based on "leaky" cdc28 temperature-sensitive alleles (![]()
Ime2 and Cdc28 are interchangeable in promoting initiation of premeiotic DNA replication:
We showed that in the absence of the hCdk2 homolog, IME2, Cdc28 is required for entry into premeiotic DNA replication. The double mutant ime2
cdc28-4 arrests at the nonpermissive temperature prior to premeiotic DNA replication and meiotic recombination, whereas at the permissive temperature this mutant exhibits the same phenotype as a single ime2
diploid; namely, these processes occur, but with a substantial delay (Fig 5 and Fig 6). As discussed above, the single cdc28-4 mutant is proficient in both premeiotic DNA replication and commitment to meiotic recombination (Fig 6, data not shown, and ![]()
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What might be the kinase that promotes entry into premeiotic DNA replication under normal conditions? Three possible models can be envisioned: (1) Cdc28 alone is required for initiation of premeiotic DNA replication, (2) the activity of both Cdc28 and Ime2 is required for initiation of premeiotic DNA replication, and (3) Ime2 alone suffices for initiation of premeiotic DNA replication. The first model is the least appealing because it does not explain the DNA replication phenotypes associated with either the ime2
or ime2
cdc28-4 mutants. The second and third models are based on the observation that the kinase activity of Ime2 is required for its role in promoting premeiotic DNA replication. The second model assumes that although Ime2 and Cdc28 can substitute for one another, these kinases possess specific functions. For example, Ime2 phosphorylates Sic1, whereas Cdc28/Clb5,6 phosphorylates additional proteins required for DNA synthesis. Phosphorylation of Sic1 by the Cdc28/Cln1,2 kinase, and, similarly, its phosphorylation by Ime2, might target it for degradation, thus relieving its inhibiting effect on the activity of the Cdc28/Clb complexes (![]()
diploid cells the level of Sic1 is increased (![]()
clb6
diploids arrest prior to premeiotic DNA replication (![]()
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cells), DNA replication is not restricted to a single round (Fig 5A and ![]()
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cells leads to uncoupling between DNA synthesis and cell division, reinitiation of DNA synthesis, and the accumulation of cells with >4C DNA content (Fig 8). These results disagree with the second model, which assumes that the delay in premeiotic DNA replication is due to the inhibitory effect of Sic1. According to this model, early activation of Cdc28 by Clb1 is expected to result in either inhibition to DNA synthesis or proper entry into the meiotic cycle, as observed for ectopic expression of Clb2 in the mitotic cycle (![]()
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High activity of Cdc28 is essential for the second meiotic division:
Using the cdc28-deg allele we showed that Cdc28 is essential for meiosis, that in its absence meiosis was not completed, and that asci were not formed (Table 2). High and effective levels of Cdc28 throughout meiosis are required for completing two meiotic divisions. In cells incubated in SPM without copper sulfate, only 22% of the asci had four spores, compared to 90% in the presence of the inducer (Table 2). Under these conditions the percentage of asci did not decline, suggesting that attenuated activity of Cdc28 suffices for completing one nuclear division. Previously it was reported that Cdc28 is required at two meiotic stages, at pachytene and at meiosis II, for separation of the duplicated SPB (![]()
10% asci), and genetic analysis, using centromere markers, has shown that these asci carry diploid spores that result from a single meiotic division, the reductional (![]()
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30% asci, of which 90% are two-diploid spores that have gone through meiosis I (MI) and not MII. These results suggest that Cdc28 might not be essential for the first meiotic division. On the other hand, the observation that diploid cells deleted for CLB1, -3, and -4 give rise to mainly one-spored asci (![]()
| CONCLUSION |
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We have demonstrated that Cdc28 and Ime2 have redundant functions in relation to premeiotic DNA replication and meiotic recombination. Nonetheless, it cannot be determined from our results whether it is Cdc28 or Ime2 that normally promotes entry into premeiotic DNA replication. We favor the hypothesis that it is Ime2, because the use of a specific regulator for entry into meiosis might ensure that this pathway is an alternative to mitosis. Moreover, this hypothesis might explain how, in meiosis, two successive nuclear divisions follow a single round of DNA replication. This hypothesis is supported by the observation that in cells deleted for IME2, regulation of DNA replication and nuclear division is lost, and an additional round of DNA synthesis and nuclear division is observed (![]()
-primase complex Pol12 is dephosphorylated, whereas in wild-type diploids following completion of premeiotic DNA replication, it is degraded (![]()
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| FOOTNOTES |
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1 These authors contributed equally to this work. ![]()
| ACKNOWLEDGMENTS |
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We thank K. Benjamin, M. Foiani, and I. Herskowitz for helpful discussions and critical reading of the manuscript. We thank J. Diffley, B. Futcher, N. Kleckner, M. Johnston, D. Lew, A. Sugino, and Y. Yamashita for kindly providing plasmids. This work was supported by a grant from the Israel Science Foundation and the United States-Israel Binational Science Foundation.
Manuscript received July 9, 2001; Accepted for publication September 28, 2001.
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