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The Spatial Structure of Sexual and Cytonuclear Polymorphism in the Gynodioecious Beta vulgaris ssp. maritima: I/ at a Local Scale
Valérie Laporte1,a, Frédérique Viard2,a, Gilles Bena3,a, Myriam Valeroa, and Joël Cuguenaa Laboratoire de Génétique et Evolution des Populations Végétales, UPRESA CNRS 8016, FR CNRS 1818, Université de Lille I, 59655 Villeneuve d'Ascq Cedex, France
Corresponding author: Joël Cuguen, Laboratoire de Génétique et Evolution des Populations Végétales, UPRESA CNRS 8016, FR CNRS 1818, Bâtiment SN2, Université de Lille I, 59655 Villeneuve d'Ascq Cedex, France., joel.cuguen{at}univ-lille1.fr (E-mail)
Communicating editor: O. SAVOLAINEN
| ABSTRACT |
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We have analyzed the spatial distribution of the sex phenotypes and of mitochondrial, chloroplast, and nuclear markers within two gynodioecious populations of Beta vulgaris ssp. maritima. Within both populations, sexual phenotype variation is controlled mainly by the cytoplasmic genotype, although in one study population a joint polymorphism of cytonuclear factors is clearly involved. In spite of contrasts in the ecology (mainly due to different habitats), a clear common feature in both populations is the highly patchy distribution of cytoplasmic haplotypes, contrasting with the wide distribution of nuclear diversity. This high contrast between cytoplasmic vs. nuclear spatial structure may have important consequences for the maintenance of gynodioecy. It provides opportunities for differential selection since nuclear restorer alleles are expected to be selected for in the presence of their specific cytoplasmic male sterile (CMS) type, but to be neutral (or selected against if there is a cost of restoration) in the absence of their CMS type. Selective processes in such a cytonuclear landscape may explain the polymorphism we observed at restorer loci for two CMS types.
GYNODIOECY, the coexistence of hermaphrodite and female (male sterile) individuals in natural populations, is relatively frequent in angiosperm species (![]()
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Theoretical models, however, have outlined the difficulties of maintaining such a joint cytonuclear polymorphism, since in the absence of a large female advantage, nuclear restorer alleles are expected to sweep to fixation (![]()
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Cytonuclear sex determination systems have been experimentally well documented (reviewed in ![]()
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This study is also concerned with the spatial distribution of the genetic diversity at a very local scale within gynodioecious populations. This is, however, the first study that integrates the investigation of sexual phenotypes, mitochondrial, chloroplast, anonymous nuclear markers [both restriction fragment length polymorphism (RFLP) and microsatellites], and nuclear markers loosely linked to selected genes (RFLP). We have examined the spatial distribution of these markers within two gynodioecious populations of B. vulgaris ssp. maritima with contrasting habitats. First, we determined whether the sexual polymorphism within populations is due to a joint cytonuclear polymorphism, critical information for understanding the maintenance of gynodieocy. Moreover, fine mapping of >100 individuals per population allowed us to quantify and compare the local spatial distribution of phenotypic and molecular markers using spatial autocorrelation, F-statistics, and linkage disequilibrium analyses. Through these different analyses, the relative magnitude of pollen vs. seed dispersal and the importance of founder effects and selective processes were assessed at this local scale.
| MATERIALS AND METHODS |
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The species:
B. vulgaris can be divided into the wild form, B. vulgaris subsp. maritima; the cultivated form, B. vulgaris subsp. vulgaris; and the weed form that originates from introgression from wild to cultivar populations and infests crop fields (![]()
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In the north of Europe, sea beets are short-lived perennials (![]()
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Study populations and sampling procedures:
Two gynodioecious populations, 60 km from each other, were sampled in 1993. Both populations were linear and comprised
400 individuals. They had contrasted habitats. The population named "Authie" was located along the estuary of the river Authie and was 400 m long. The population named "Wimereux" overhung a small cliff and extended over 150 m. Within each population, different subpopulations were distinguishable in the field by demographic discontinuities (Fig 1). In Wimereux, three subpopulations (W1, W2, W3) were identified; neighboring subpopulations were separated by 1530 m. In Authie, two subpopulations (A1, A2), 70 m apart, were discriminated.
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A total of 242 flowering plants were sampled: 115 in Authie and 127 in Wimereux. Plants were sampled randomly within each subpopulation, regardless of their sex, and all individuals located between the major subpopulations were also sampled (see Fig 1). All sampled plants were mapped, their sexual phenotype (hermaphrodite vs. female) was determined, and leaves were collected for molecular studies.
Molecular analyses:
DNA extraction:
Total genomic DNA was extracted using a modified ![]()
Mitochondrial RFLP analyses:
Mitochondrial DNA diversity was studied using RFLP markers, as described in SAUMITOU-LAPRADE et al. (1993). Mitochondrial haplotypes were identified using three diagnostic probes on EcoRI DNA digests: ATPase subunit 6 (![]()
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Chloroplast RFLP analyses:
Chloroplast DNA diversity was studied using RFLP techniques, as described in ![]()
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Nuclear RFLP analyses:
Nuclear RFLP analyses were performed as described by ![]()
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Microsatellite analyses:
Amplifications of two microsatellites loci, Bvm2 and Bvm3, were carried out as described by ![]()
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Data analyses:
Within-population diversity and linkage disequilibrium:
The frequency of females, the number of mitochondrial and chloroplast haplotypes, and the number of alleles per nuclear locus were estimated. For each cytoplasmic and nuclear marker, the gene diversity was estimated using the program FSTAT v. 1.2 (![]()
The associations between the sexual phenotypes and the cytoplasmic and nuclear markers were investigated. Linkage disequilibrium between the cytoplasmic markers was estimated and normalized according to the haplotype frequencies (![]()
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idák's correction was applied (![]()
Hierarchical analysis:
Hierarchical analyses of the distribution of cytoplasmic and nuclear diversities were conducted using F-statistics (![]()
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,
, and
of the parameters Fis, Fst , and Fit were computed according to ![]()
was estimated for cytoplasmic (haploid) markers. We tested the null hypothesis of Hardy-Weinberg proportions of the nuclear genotypes within subpopulations (Ho: Fis = 0) and within the whole population (Ho: Fit = 0). The significance values of the tests were obtained by using the permutation procedures included in FSTAT (5000 resamplings). The test of the null hypothesis of no variance of cytoplasmic and nuclear allelic frequencies between subpopulations was tested using an exact G-test with 5000 resamplings of the data by permuting the individuals (![]()
Spatial autocorrelation analyses:
The spatial distribution of the sexual phenotypes, cytoplasmic haplotypes, and nuclear alleles was studied by spatial autocorrelation analyses (![]()
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| RESULTS |
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Within-population diversity:
Both populations were gynodioecious but with significantly different frequencies of females: 16% in Authie vs. 40% in Wimereux (exact test: P < 0.0001). In the total sample of 242 individuals, seven mitochondrial and six chloroplast haplotypes were found. Mitochondrial and chloroplast markers were polymorphic within each population (Table 1 and Fig 2). Six mitochondrial and five chloroplast haplotypes were recorded in Authie, but only two mitochondrial and two chloroplast haplotypes in Wimereux. Within each population, mitochondrial and chloroplast markers displayed absolute linkage disequilibrium (D' = 1). Overall, seven cytoplasmic haplotypes (i.e., combination of chloroplast and mitochondrial haplotypes) were detected: five in Authie (B/g, G/f, K/g, L/c, and Svulg/j), one in Wimereux (E/d), and one (A/a) in both populations. In spite of the different number of haplotypes, both populations had the same level of cytoplasmic diversity, as quantified by Nei's diversity index, since several haplotypes in Authie were quite rare (Table 2 and Fig 2).
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Within each population, a strong association was found between the sexual phenotypes and the cytoplasmic haplotypes (Table 2). In Authie, four haplotypes (A/a, B/g, K/g, and L/c) were seen only in hermaphrodites, one (G/f) only in females, and only the rare haplotype Svulg/j was found in both sexual phenotypes. In Wimereux, one haplotype (A/a) was strictly associated with hermaphrodites and the second one (E/d) was seen in both sexual phenotypes, mainly with females (82% of the individuals carrying the E/d haplotype were females).
In each population, at least two alleles per nuclear locus were detected (Table 2 and Fig 2). The microsatellite locus Bvm3 had the highest number of alleles (9 alleles in Authie and 11 in Wimereux). Nei's diversity index varied between loci from 0.06 (pKP826) to 0.74 (pKP753) in Authie and from 0.20 (pKP826) to 0.82 (Bvm3) in Wimereux. Analyses of nuclear disequilibria revealed significant associations at four pairs of nuclear loci in Authie (pKP753/pKP967; pKP753/Bvm2; pKP967/Bvm2; and pKP826/Bvm3) and at four other pairs of loci in Wimereux (pKP753/pKP851; pKP753/pKP826; pKP967/pKP851; and pKP851/pKP826), but none remained significant after a correction for multiple tests (![]()
idák's correction for multiple tests (Bvm3, P = 0.0007 and Bvm2, P = 0.004). Finally, in Wimereux, for the individuals with the cytoplasmic haplotype E/d (for which both sexes were found), three nuclear loci (pKP753, pKP826, and Bvm3) were in significant disequilibrium with the sexual phenotype. One association, involving pKP753, the marker physically linked to the nuclear restorer locus R1H (![]()
idák's correction (P = 0.05). This disequilibrium is mainly due to the most frequent allele at pKP753, which was associated with females (D'PK753-2EF = + 0.62).
Within-population spatial structure:
The frequency of females was extremely different between the local subpopulations: in Wimereux, 52, 73, and 0% of females were found in W1, W2, and W3, respectively; in Authie, female frequencies of 41 and 0% were found in A1 and A2, respectively (see Fig 1). Within each population, cytoplasmic haplotypes were even more patchily structured than sexual phenotypes, and their spatial distribution remarkably followed the spatial discontinuities among subpopulations (suggesting that each subpopulation is the result of different founder events; see Fig 1). In Wimereux, all individuals sampled in subpopulation W3 had the mitochondrial haplotype (A); 80% of the individuals sampled in subpopulation W2 displayed another mitochondrial haplotype, namely, E, while the third subpopulation, W1, was a mosaic of four monomorphic patches (A or E). In Authie, subpopulation A2 was nearly monomorphic for the mitochondrial haplotype A but the second one, A1, was polymorphic.
The F-statistic analyses revealed significant spatial substructuring within each population (Table 3). Overall, nuclear markers revealed a slight but significant deficiency of heterozygotes (
= 0.06 in Authie,
= 0.05 in Wimereux). This was mainly due to a low differentiation between subpopulations (
= 0.019 in Authie and 0.028 in Wimereux, respectively, P < 0.001) with no significant heterozygote deficiencies within the subpopulations (
= 0.038 and 0.021 in Authie and 0.028 in Wimereux, respectively). Examination of the individual nuclear locus F-statistics are in agreement in Wimereux: no locus showed significant heterozygote deficiencies within the subpopulations and all but one revealed a significant differentiation between the subpopulations (with
varying from 0.001 to 0.058). In Authie, the overall pattern is slightly less clear, with two loci showing significant heterozygote deficiencies (including one locus with very little polymorphism, pKP826) and three loci showing no significant differentiation between the subpopulations (with
varying from -0.007 to 0.066).
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Within each population, cytoplasmic markers were considerably more differentiated between the subpopulations than nuclear loci, with 25-fold larger
. Moreover, the Wimereux population had a clearly greater degree of spatial structure than Authie (
= 0.75 vs. 0.42).
In Wimereux, we also investigated the cytonuclear associations at the subpopulation level for the two loci that displayed significant cytonuclear disequilibria over the whole population (Table 4). At Bvm2, one nuclear allele (Bvm2-5) was preferentially associated with the mitochondrial haplotype A over the whole population. Within each subpopulation, the same tendency was observed. By contrast, the disequilibrium at Bvm3 was an among-subpopulation effect as the individuals with the mitochondrial haplotype A were associated with different nuclear alleles at Bvm3, depending on their location.
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The significant spatial structure can also be visualized through the autocorrelograms (Fig 3). Within each population, all three correlograms of the sexual phenotypes, the cytoplasmic haplotypes, and the nuclear alleles revealed a decrease from significantly positive autocorrelations (individuals separated by <17 m in Wimereux and <100 m in Authie) to significantly negative values at greater distance intervals (>44 m in Wimereux and >227 m in Authie). Similar patterns were obtained for sexual phenotypes and cytoplasmic haplotypes, as expected due to their close association. Conversely, there was a considerable difference between the cytoplasmic and nuclear autocorrelograms: the estimated kinship coefficients were 10-fold lower for nuclear markers compared to cytoplasmic haplotypes. Cytoplasmic autocorrelograms also revealed a striking difference between the populations, with correlation coefficients in Wimereux more than twice as large as in Authie (e.g., in the first distance class, Frmt = 0.82 vs. 0.30).
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| DISCUSSION |
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The sexual polymorphism and the sex determination system within populations:
We studied two sea beet gynodioecious populations, namely, Wimereux and Authie, with 40 and 16% of females, respectively. The first major result is the highly clumped distribution of the sexual phenotypes. Within each population, we observed a succession of patches containing exclusively (or predominantly) a single sexual phenotype, either hermaphrodite or female (see Fig 1). This grouping contrasts with the pattern described in the well-studied gynodioecious species T. vulgaris (![]()
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In beets, the sex determination system can be investigated by analyzing the association between the sexual phenotypes and the mitochondrial haplotypes revealed by molecular markers (![]()
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However, within both study populations, a sexual polymorphism was also observed for a given mitochondrial haplotype. In Wimereux, 20% of the individuals with haplotype E were hermaphrodites. In Authie, out of three plants with the haplotype Svulg, one was a hermaphrodite. This suggests that the maintenance of gynodioecy depends on both cytoplasmic and nuclear factors. These observations were confirmed by the presence of hermaphrodites in the progenies of females pollinated in situ (![]()
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The spatial structure of cytonuclear diversity and the founder effect hypothesis:
In both populations we found high cytoplasmic diversity, but the populations differed by their number of haplotypes: six and two cytoplasmic haplotypes were detected in Authie and Wimereux, respectively. None of the three mitochondrial haplotypes in which male sterility occurred (E, G, and Svulg) is unique to these populations (![]()
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We also found a high nuclear diversity using both RFLP and microsatellite markers. There is, however, a major contrast between the spatial structure of cytoplasmic and nuclear markers within each population (see Fig 3). Cytoplasmic diversity is very low within subpopulations and high between closely adjacent subpopulations (see Fig 1). Conversely, the nuclear diversity is largely distributed within the subpopulations, and the nuclear differentiation between the subpopulations is considerably lower than the cytoplasmic differentiation. This is quantified through the estimates (i) of the kinship coefficients in the first class of distance of the autocorrelograms and (ii) of the Fst between subpopulations that are both 10 times lower for nuclear than for cytoplasmic genes. These observations are in agreement with the few other studies that have compared the spatial structure of cytoplasmic and nuclear markers at a local scale within angiosperm plant populations, including the gynodioecious species T. vulgaris (![]()
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Therefore, our observations suggest that (i) very local subpopulations may have originated from different founder events; (ii) seed dispersal is very restricted, almost never occurring between subpopulations, so that subpopulations expand until they nearly merge without losing their initial cytoplasmic differentiation; and, finally, (iii) founder events affect the nuclear polymorphism and its spatial structure only slightly, and/or sufficient pollen dispersal quickly erases any nuclear differentiation due to founder effects. Little is known about the population dynamics of natural populations of B. vulgaris ssp. maritima. However, the sea shore, its typical habitat, is potentially highly disturbed due to both human activities and natural perturbations (![]()
The processes sustaining the sexual polymorphism:
This major contrast between cytoplasmic and nuclear diversity patterns may have important consequences for the maintenance of gynodioecy. The high cytoplasmic differentiation provides a landscape for differential selection, since restorer alleles are selected for in the presence of their specific cytotype but are either neutral or even selected against (under the hypothesis of a cost of restoration) in its absence. High nuclear gene flow between locations subject to different selection pressures could account for the polymorphism at nuclear restorer loci. This may occur at a very local scale, since very local subpopulations are highly cytoplasmically differentiated. This may also occur between populations since wild beet populations show different patterns of cytoplasmic diversity (![]()
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For instance, Svulg had never been reported in French natural sea coast populations (![]()
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The haplotype G, by contrast, appears completely male sterile, at least from in situ observations. This haplotype is rare in France and Spain (![]()
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Finally, in Wimereux, the mitochondrial haplotype E was clearly associated with polymorphic restorer loci but the low level of restoration is striking given the relatively high frequency of this haplotype within the population. The genetic diversity also revealed an unexpected pattern: in spite of high nuclear gene flow, as evidenced by individual nuclear markers, we found three significant linkage disequilibria between markers. This is unexpected in a highly outcrossed population at equilibrium, thus suggesting either selective processes or a nonequilibrium metapopulation dynamics (![]()
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The linkage disequilibrium involving the microsatellite Bvm3 is due to the cytonuclear structure among the farthest subpopulations: individuals carrying the mitochondrial haplotype A are associated with different nuclear alleles at Bvm3, depending on their location. Such a pattern can be expected after founding if individuals from different subpopulations originated from founders with different nuclear backgrounds, despite their cytoplasmic similarity. Although the persistence of this disequilibrium is unexpected with high nuclear gene flow, pollen flow between the farthest subpopulations may be restricted because they are separated by a clump of females.
By contrast, at the microsatellite Bvm2, one nuclear allele is preferentially associated with the mitochondrial haplotype A independently of the plants' location. Such a pattern is expected under cytonuclear selection (![]()
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At the RFLP pKP753, one allele, frequent in females, is rare in hermaphrodites with the haplotype E. Because pKP753 is physically linked to nuclear restorer loci of the H and Svulg cytoplasmic haplotypes (![]()
This disequilibrium could reflect a recent migration of restorer alleles in the population. Nonequilibrium dynamics between migration and selection pressures would also explain the low level of nuclear restoration. Such a disequilibrium due to metapopulation dynamics is expected to be very transient, unless the marker is physically linked with nuclear restorer loci. Moreover, the allele pKP753-2 that is frequent in females (i.e., associated with nonrestorer alleles) is also frequent in hermaphrodites carrying the A mitochondrial haplotype, such that we observe a significant cytonuclear disequilibrium within hermaphrodite individuals (D' = 0.58, P = 0.011). Under the hypothesis that pKP753 is physically linked to a restorer locus of the E male sterility type, this cytonuclear disequilibrium could indicate a cost of restoration as well as a recent migration event. Indeed, differential selection between haplotypes will generate permanent cytonuclear disequilibria between the mitochondrial haplotype and the nuclear restorer loci, as well as transient cytonuclear disequilibria with other nuclear loci physically linked to the restorer loci. Although a cost of restoration has not been studied in B. vulgaris ssp. maritima, it has been suggested in several gynodioecious species including T. vulgaris (![]()
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Habitat differences, gynodioecy, and founder effects:
The two study populations show different patterns regarding gynodioecy: they differ in their frequency of females, the mtDNA haplotypes that are associated with male sterility, and the level of nuclear restoration associated with these cytoplasmic haplotypes. As previously discussed, the cytoplasmic component is the main determinant of the sex determination system in both populations. Therefore, these differences appear mainly due to cytoplasmic differentiation between the populations. Other differences between the populations concern (i) the plant density (higher in the cliff population than in the estuary population), (ii) the number of cytoplasmic haplotypes (higher in the estuary population than in the cliff population), and (iii) the cytoplasmic differentiation between subpopulations (extremely high in the cliff population, lower in the estuary population).
A likely explanation for these differences is an effect of the habitat occupied by the two populations. Indeed, the Authie population is located along the estuary. The Wimereux population, however, overhangs a small cliff. Since seeds of sea beet are dispersed by the tide (![]()
| FOOTNOTES |
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1 Present address: Institute of Cell, Animal and Population Biology, University of Edinburgh, Edinburgh EH9 3JT, United Kingdom. ![]()
2 Present address: Station Biologique de Roscoff, Place Georges-Teissier, BP 74, 29682 Roscoff Cedex, France. ![]()
3 Present address: Laboratoires des Symbioses Tropicales et Mediterraneenes (UMR 113 AGRO-M/CIRAD/INRA/IRD), 340398 Montpellier Cedex 5, France. ![]()
| ACKNOWLEDGMENTS |
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We thank P. Saumitou-Laprade for assistance and discussions, D. Charlesworth, D. McCauley, O. Savolainen, H. Van Dijk, M. Whitlock, and an anonymous reviewer for helpful comments on the manuscript, M. Mörchen for help with microsatellite data, C. J. Basten, B. K. Epperson, O. Hardy, J. Goudet, and J. Nason, for sending us their analysis software and Ch. Jung and G. Steinrücken (Dieckmann Company) for providing us the nuclear RFLP probes. This research was supported by funding from the Région Nord Pas-De-Calais and the European community (European Regional Development FundERDF); V.L. received a research fellowship from the Ministère de l'Enseignement Supérieur et de la Recherche no. 94941.
Manuscript received June 9, 2000; Accepted for publication December 18, 2000.
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