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The Drosophila Cystoblast Differentiation Factor, benign gonial cell neoplasm, Is Related to DExH-box Proteins and Interacts Genetically With bag-of-marbles
B. Ohlstein1,a, C. A. Lavoie1,a, O. Vefb, E. Gateffb, and D. M. McKearinaa Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas
b Department of Genetics, Johannes Gutenberg University, D55099 Mainz, Germany
Corresponding author: D. M. McKearin, Department of Molecular Biology, U. T. Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, TX 75390-9148., mckearin{at}utsw.swmed.edu (E-mail)
Communicating editor: T. SCHÜPBACH
| ABSTRACT |
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Selection of asymmetric cell fates can involve both intrinsic and extrinsic factors. Previously we have identified the bag-of-marbles (bam) gene as an intrinsic factor for cystoblast fate in Drosophila germline cells and shown that it requires active product from the benign gonial cell neoplasm (bgcn) gene. Here we present the cloning and characterization of bgcn. The predicted Bgcn protein is related to the DExH-box family of RNA-dependent helicases but lacks critical residues for ATPase and helicase functions. Expression of the bgcn gene is extremely limited in ovaries but, significantly, bgcn mRNA is expressed in a very limited number of germline cells, including the stem cells. Also, mutations in bgcn dominantly enhance a bam mutant phenotype, further corroborating the interdependence of these two genes' functions. On the basis of known functions of DExH-box proteins, we propose that Bgcn and Bam may be involved in regulating translational events that are necessary for activation of the cystoblast differentiation program.
ASYMMETRIC stem cell divisions produce a new daughter stem cell and a second daughter that will undergo specialized differentiation (![]()
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Establishing and maintaining oogenic GSCs requires the transforming growth factor ß (TGFß)-like signal Decapentaplegic (Dpp) since mutations in Dpp receptors or signal transducing Smad transcription factors cause stem cell loss (![]()
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Intrinsic GSC maintenance factors include Pumilio (Pum) and perhaps Nanos (Nos; ![]()
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Studies focused on how asymmetric division produces the cystoblast have identified two intrinsic factors, bag-of-marbles (bam; ![]()
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Previously, we have shown that Bgcn is an essential cystoblast differentiation factor that is required for Bam function and can regulate Bam localization (![]()
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| MATERIALS AND METHODS |
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Drosophila stocks and culture:
Flies were maintained on standard molasses agar media as described in ![]()
Chromosomes carrying deficiencies of the 60A region were used to map the position of the bgcn gene. The distal breakpoint for Df(2R)OV1 is in chromosomal locus 60A1 while the distal breakpoint of Df(2R)b23 extends an additional 15 kb (![]()
Sequencing the bam[BW] allele and candidate genes from bgcn alleles:
DNA corresponding to candidate genes was recovered from wild-type genomes and mutant bgcn alleles by PCR and the products were sequenced at the Department of Molecular Biology Sequencing Facility at U.T. Southwestern. The products from at least four parallel PCR reactions were pooled for sequencing to minimize the potential for mistaking PCR errors for in vivo mutations. When these experiments revealed mutations in relevant DNA fragments, the appropriate fragment was recovered again from multiple, parallel PCR reactions and sequenced to confirm the mutation.
Recovering bgcn candidates from cDNA and genomic DNA libraries:
Genomic clones including the bgcn locus were obtained as cosmids from the European Genome Consortium. wibg cDNA clones were recovered from an ovarian cDNA library (![]()
bgcn alleles:
bgcnQS2 and bgcnQW34 were obtained from Drs. A. Mahowald and R. Steward; originally they were recovered from EMS screens by Dr. T. Schüpbach (![]()
The P[lacW] transposon (![]()
The bgcn1 allele was recovered from an EMS screen of w; b flies. Alleles bgcnz2-1185, bgcnz2-1748, and bgcnz2-3112 were recovered from a mutagenesis screen of cn bw flies for male sterile mutations (B. WAKIMOTO, D. LINDSLEY, E. KOUNDAKJIAN and C. ZUKER, personal communication).
Germline transformation:
Germline transformation was carried out essentially as described by ![]()
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Molecular biology:
PCR, Northern blots, Southern blots, cloning, etc., were all carried out essentially as described in ![]()
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| RESULTS |
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Mapping the bgcn locus:
Previous meiotic mapping placed bgcn in the 60A region (![]()
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The P-allele bgcnoe1 was used to refine the position of the bgcn gene. Chromosomal in situ hybridization showed that bgcnoe1 flies (MATERIALS AND METHODS) carried a P-element insertion at 60A. Homozygous and hemizygous bgcnoe1 flies were male and female sterile and had tumorous gonads like canonical bgcn mutations. Finally, excision of the P element from bgcnoe1 restored fertility to both males and females. Thus we concluded that the transposon in bgcnoe1 was inserted in or very close to the bgcn gene.
A fragment of genomic DNA adjacent to the P element in bgcnoe1 was recovered by plasmid rescue (![]()
bgcn is a complex gene:
The genomic fragment recovered by plasmid rescue was used to identify cDNA clones that corresponded to a 1.0-kb transcript, which included the insertion site for the bgcnoe1 transposon. However, several results suggested that this transcript did not belong to the bgcn gene. The most compelling data were that a 4.2-kb genomic fragment containing the coding sequence for the 1.0-kb transcript could not rescue bgcn mutant flies and the coding sequence was wild-type in four EMS-induced bgcn alleles. While this manuscript was in preparation, an article describing transcription units in the 60A region appeared (![]()
We concluded that the authentic bgcn gene must be near the bgcnoe1 transposon insertion site and considered the possibility that a larger gene encompassed the region. Indeed, we found that probes derived from either side of the wibg gene recognized the same ~4100 nucleotide transcript of very low abundance in females and higher abundance in males (Fig 2). Thus we concluded that the wibg gene was located within the intron of a larger transcript that was a candidate for the bgcn gene.
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cDNA clones for the larger transcript were recovered from a testis cDNA library and sequenced. The assembled transcript is ~3900 nucleotides in length and predicts a protein of 1215 amino acids with Mr 1.39 x 105. The intron-exon structure and features of the cDNA and predicted protein sequence are shown in Fig 1 and Fig 3. As we had observed with genomic probes for mRNAs, the candidate bgcn transcript is abundant in samples of male poly(A+) mRNA but exceedingly rare in female poly(A+) samples (Fig 2).
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We used the genomic DNA sequence (Berkeley Drosophila Genome Project, unpublished results; http://www.fruitfly.org) to design primers for sequencing the candidate bgcn ORF from EMS-induced bgcn alleles (![]()
Although the germ cell phenotypes of all bgcn alleles were indistiguishable, immunolocalization experiments with Bam antisera revealed one significant difference. While Bam fusome localization was blocked in the bgcn1 allele (![]()
Nonspecific expression of bgcn rescues the mutant phenotype:
Using the cDNA clone recovered from the testis library, we constructed a heat-shock inducible bgcn transgene for germline rescue experiments. Ovaries of bgcn mutant females contain tumorous egg chambers such as those seen in Fig 4A. The ovaries of all P[w+; hs-bgcn]/+; bgcn1/bgcn1 females expressing transgenic bgcn+ had maturing egg chambers and germaria organized into morphologically distinct regions 1, 2, and 3 (Fig 4B) that were formed as cysts assembled (![]()
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Since rescue of the oogenic tumorous phenotype verified that transgenic Bgcn was active in early germ cells, we could examine the effects of bgcn misexpression during early stages of the germ cell lineage. Previous experiments had demonstrated that bam and bgcn phenotypes were sufficiently similar to suggest a common function (![]()
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Comparative analysis of the bgcn gene:
The bgcn sequence was compared to sequences in the GenBank database using the BLAST algorithm available at NCBI (![]()
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Fig 5, part 1 shows the alignment of Bgcn and Arabidopsis thaliana HVT1 protein, the highest scoring BLAST match (~10-42). A. thaliana HVT1 is a member of the DExH helicases based on sequence comparison although its specific function is unknown (![]()
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Many residues outside of the canonical helicase family motifs are also conserved in helicases but they have not been associated with biochemical activities (![]()
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Bgcn alignment with HVT1 also includes sequences that are not typically part of the DExH/DEAD family core. Bgcn and HVT1 share limited sequence similarity in the N-terminal 150 amino acids and C-terminal 300 amino acids but these regions are not similar to any other proteins in the GenBank database. The N terminus of some DexH/DEAD-box proteins contains divergent versions of the double-stranded RNA-binding domain (DSR-BD; ![]()
The region between residues 320 and 475 in Bgcn does not align with other helicase proteins except HVT1. The SMART algorithm, which recognizes common protein domains based on likely secondary structure (http://coot.embl-heidelberg.de/SMART; ![]()
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bgcn mRNA pattern confirms predicted GSC expression:
We had previously observed that bgcn mutant GSCs were not eliminated by Bam misexpression (![]()
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bgcn is a dominant enhancer of bam phenotypes:
Previously, we have presented evidence that Bgcn and Bam might be interdependent cystoblast differentiation factors (![]()
86 allele (![]()
86 genotype causes females to be weakly fertile with small ovaries that contain mostly wild-type egg chambers. Sequencing the bamz3-2884 allele revealed a single C
T mutation that changed L255
F. When the bgcn gene dosage was reduced by half in transallelic animals (bgcn/+; bamz3-2884/bam
86), females became sterile and produced only tumorous cysts similar to those found typically in bam
86/bam
86 flies (Fig 7). This interaction was tested for five bgcn alleles derived from four separate mutagenic screens and all behaved identically as dominant enhancers of the "sensitized" bam phenotype.
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| DISCUSSION |
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bcgn gene identification:
Transgenic rescue of the bgcn phenotype and DNA sequencing of mutant bgcn alleles allowed us to distinguish between the bgcn and wibg genes. However, while cyst formation and egg chamber assembly was rescued by an inducible bgcn transgene, oogenesis was incomplete in rescued females. Possible explanations include that the P[hs-bgcn] transgene does not provide Bgcn product at all appropriate times for full oogenic rescue or misexpression of bgcn in somatic ovarian cells may interfere with proper oogenic progress. These same reasons, applied to spermatogenesis, could explain the failure of the P[hs-bgcn] transgene to rescue fertility in bgcn mutant males.
Ovarian in situ hybridization with bgcn revealed that the major site of bgcn accumulation was in a small number of cells at the most anterior tip of the germarium. Although the signal-to-noise ratio was reliable in these assays, we cannot exclude that bgcn is expressed at a low level elsewhere. The most significant aspect of bgcn expression was that, unlike bam mRNA, GSCs were positive for bgcn transcripts. At first, GSC expression appeared counterintuitive since bgcn is required for cystoblast, but not GSC, development (![]()
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Northern blot analysis revealed that bgcn was expressed at very low levels in ovaries but at significantly higher abundance in testes. In addition, the female transcript was reproducibly smaller than the male. The very low abundance of bgcn mRNA in female poly-A+ samples can be explained by the very restricted pattern of expression in ovaries although we do not yet know what factors account for the sexually dimorphic expression levels. Preliminary in situ hybridization suggested that bgcn was expressed throughout the testis but a more clear understanding of Bgcn expression will emerge when antibodies are available.
Bgcn is distantly related to DExH-box proteins:
The predicted Bgcn sequence revealed two specific similarities; one to the superfamily of ATP-dependent RNA helicases and a second to ankyrin domains. RNA helicases are a very large family of proteins that are primarily involved in either pre-mRNA processing or in translational control (![]()
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The degree of conservation predicts that Bgcn and helicases share some biochemical activities. Since Bgcn does not have the motifs required for ATP binding and helicase activity, we postulate that Bgcn shares the RNA interaction activity that characterizes the DExH proteins. Bgcn might represent an ancestral DExH protein that predates the acquisition of domains involved in ATP hydrolysis and RNA helicase catalysis. An alternative is that Bgcn represents a more modern branch that lost those domains involved in ATPase and helicase activity. Irrespective of the protein evolutionary implications of Bgcn and helicase similarities, we predict that Bgcn regulates post-transcriptional events.
The highest BLAST score of alignment was between Bgcn and the HVT1 protein of A. thaliana. HVT1 is clearly a member of the DEIH-box subfamily of helicases but differs from most other family members by having two ankyrin domains; Bgcn shares this feature with HVT1, having two ankyrin domains between amino acid positions 400 and 508. The Arabidopsis genome database contains at least one other helicase (NIH protein) that is similar to HVT1 protein and contains ankyrin domains (![]()
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bgcn and bam gene function are closely related and dosage sensitive:
In previous studies we demonstrated that bgcn+ was necessary for proper Bam function and proposed that Bam and Bgcn may act together in a complex to accomplish cystoblast differentiation (![]()
Is Bgcn a translational regulator?
As a member of the DExH-box family, Bgcn may be an RNA interacting protein. To explain the genetic and molecular aspects of their expression, we have presented evidence (this article; ![]()
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| FOOTNOTES |
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1 These authors contributed equally to this article. ![]()
| ACKNOWLEDGMENTS |
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The authors thank members of the S. Dinardo lab for sharing valuable reagents. We also thank B. Wakimoto and K. Wharton for sharing flies and unpublished information. Many thanks to E. Matunis, S. Wasserman, and L. Cooley for comments over the course of this work. Mary Kuhn provided expert technical assistance with genetic and cytological work for many of the experiments described; Erika Jost provided valuable technical assistance during the isolation of the bgcnoe1 allele. This work was supported by National Institutes of Health grant GM-45820 to D.M.
Manuscript received January 14, 2000; Accepted for publication April 21, 2000.
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