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Abnormal Turning Behavior in Drosophila Larvae: Identification and Molecular Analysis of scribbler (sbb)
Ping Yanga,b, Susan A. Shavera,b, Arthur J. Hillikerb, and Marla B. Sokolowskiaa Department of Zoology, University of Toronto, Mississauga, Ontario L5L 1C6, Canada
b Department of Biology, York University, Toronto, Ontario M3J 1P3, Canada
Corresponding author: Marla B. Sokolowski, Department of Zoology, University of Toronto at Mississauga, Mississauga, Ontario L5L 1C6, Canada., msokolow{at}credit.erin.utoronto.ca (E-mail)
Communicating editor: T. F. C. MACKAY
| ABSTRACT |
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Our genetic dissection of behavior has isolated scribbler (sbb), a vital gene that encodes a novel protein expressed in the embryonic and larval nervous systems and in the imaginal discs. Larvae with mutations in sbb exhibit abnormally high amounts of turning behavior in the absence of food. sbb is a large gene spanning >50 kb of genomic DNA with four major developmentally regulated transcripts. Transgenic rescue of scribbler behavior was demonstrated by targeting expression of a normal sbb transgene (sbb+) expressing one of the major transcripts to the nervous system. The vital function of sbb was restored by ubiquitous expression of this transgene throughout development.
MANY organisms perform turning behaviors to fine-tune their spatial position in response to variability in their environment. Changes in turning behavior are performed in specific environmental contexts, for example, in order to reorient in the direction of a food source. Bacteria tumble while swimming (![]()
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One proven method for identifying the mechanisms that underlie behavior is genetic dissection. This involves the mutagenesis and screening of animals for behavioral alterations. Genetic dissection proceeds without any assumptions as to the molecular bases of the behavior of interest. Consequently, novel genes and proteins that would otherwise remain undetected can be discovered using this method. These novel genes pave the road toward an understanding of the multiple pathways involved in generating behavioral phenotypes. The genetic dissection strategy, as used in model organisms such as Drosophila melanogaster or C. elegans, provides us with potential candidate genes to explore the functions of homologous genes in mammalian systems. For example, the circadian rhythm genes period (per) and timeless (tim), whose cyclic transcription forms the basis for the circadian pacemakers in all cells, were discovered in Drosophila by a genetic dissection of circadian behaviors. The function of the per and tim mammalian homologues parallels that initially unraveled in flies (see ![]()
Behavior-genetic analysis in Drosophila has focused on adult behaviors such as rhythms (![]()
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Here we report the identification, cloning, and expression of a new vital gene called scribbler (sbb). Normal larvae exhibit straight-line movement in the absence of food (on agar). In contrast, sbb larvae exhibit high amounts of turning on agar such that their locomotion trails are indecipherable. In other words, they leave a "scribble" on the agar surface. The expression of scribbler behavior is conditional on the absence of food in the environment. Thus the scribbler larva leaves a unique signature on agar but not on yeast surfaces. We suggest that the sbb gene may play a role in food search behavior.
| MATERIALS AND METHODS |
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Strains:
Twenty-five pupal lethal strains from the ![]()
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2-3 transposase source strain Sp/CyO;ry506,Sb,[
2-3]/TM6 (![]()
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Larval behavior:
Larval locomotion was tested by placing individual third instar larvae in the center of petri dishes (8.5 cm diameter, 1.4 cm height) coated with 10 ml of hardened nonnutritive 3.2% agar (![]()
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P-element excision procedure:
The sbbl(2)03432 mutant carried a P{PZ} P-element insert. To verify that this insert tagged sbb behavior, the P element was excised using standard crosses to the
2-3 transposase source (![]()
2-3 source of transposase (Sp/CyO; ry506Sb[
2-3]/TM6). Male progeny with both the P-element insert and the
2-3 element were chosen and mated individually to Sp/CyO;ry506 virgin females. Revertants were recovered from the progeny of this cross and were identified as ry506 male progeny. These ry506 Sb+ males were selected and mated to females of the Sp/CyO;ry506 balancer stock. The resulting CyO;ry506 progeny were collected and allowed to mate en masse. Cultures in which only CyO progeny emerged were kept as second chromosome lethal excision lines. Stocks with Cy+;ry506 progeny were viable excision lines.
P-element plasmid rescue and restriction mapping of the sbb microregion:
Genomic DNA was isolated from sbbl(2)03432 and sbbl(2)k00702 larvae using standard techniques (![]()
or XL1-blue cells. A 3.2-kb fragment (solid bar in Fig 3) was rescued from sbbl(2)03432 and a 200-bp fragment of genomic DNA flanking the P element was rescued from sbbl(2)k00702. Part of the 3.2-kb rescue product [1.2-kb EcoRI DNA fragment (shaded box in Fig 3) adjacent to the sbbl(2)03432 P element] was radiolabeled with [
-32P]dATP by random priming and used to screen 6 x 106 plaques from a Drosophila CS genomic bacteriophage
DASH II library. A total of four genomic clones were recovered; restriction mapping by EcoRI, SalI, HindIII, EcoRI + SalI, EcoRI + HindIII, and SalI + HindIII indicated that they covered roughly a 20-kb region of genomic DNA.
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3' RACE and 5' RACE:
Poly(A)+ RNA was isolated from CS larvae by using TRIZOL reagent (GIBCO BRL, Gaithersburg, MD) and the PolyAT tract mRNA isolation system (Promega, Madison, WI). An adapter primer containing poly(dT) (5'-GGCCACGCGTCGACTAGTACTTTTTTTTTTTTTTTTT-3') from the 3' RACE system for rapid amplification of cDNA ends (GIBCO BRL) was used for cDNA synthesis by SUPERSCRIPT II RT (GIBCO BRL). cDNA was used as a template for a reverse transcription (RT)-PCR amplification by using gene-specific primer 1 (5'-TTGCTGTTGCTTTCGTTTTG-3') and primer 2 (5'-ATTCCTTTGCTTCCTGGCTT-3') to confirm the existence of the >35-kb intron in sbb (Fig 3). The 3' RACE was performed by using the same single strand cDNA template as the RT-PCR described above. The primers used for the 3' RACE were gene-specific primer 2 and abridged universal amplification primer (AUAP; 5'-GGCCACGCGACTAGTAC-3'; GIBCO BRL). 5' RACE was performed according to the manufacturer's instructions (GIBCO BRL). The first and second gene-specific primers for the 5' RACE were 5'-AAGCCAGGAAGCAAAGGAAT-3' (Fig 3, primer 3) and 5'-TTTGAGTAATGCGAGGGGAGG-3' (Fig 3, primer 4).
Northern analysis:
Total RNA was isolated from third instar larvae, pupae, adult body, and adult head by TRIZOL reagent (GIBCO BRL). One milligram of total RNA was used to isolate the mRNA by the PolyAT tract mRNA isolation system (Promega, Madison, WI). About 5 µg poly(A)+ RNA from each sample was loaded on a 1% formaldehyde agarose gel and run in 1x 3-(N-morpholino) propane sulfonic acid (MOPS) plus 4% formaldehyde running buffer. The poly(A)+ RNA was transferred to Zeta-GT membrane (Bio-Rad, Richmond, CA) in 20x SSC and probed with [
-P32]dATP random labeled 3.0-kb LD13770 [or 0.7-kb Drosophila ribosomal protein 49 cDNA (rp49) used as a loading control (![]()
RNA in situ hybridization:
Embryos were collected over a 24-hr period and probed with digoxigenin UTP (Boehringer Mannheim, Indianapolis) labeled single strand antisense and sense RNA from LD13770 (sbb-cDNA LD13770). The antisense RNA was used as a positive probe and sense RNA was used as a control probe. Both the antisense and sense RNA were produced by in vitro transcription using T7 and T3 RNA polymerases (Promega), respectively, according to manufacturer's instructions. The in situ procedure was based on the protocol developed by ![]()
Transgene construction:
Restriction and sequence analysis showed that the EST clone LD13770 contained an ~3.0-kb insert. This 3.0-kb insert was cloned into the transformation vector P{UAST} in two steps. The insert was released from pBluescript SK (Stratagene, La Jolla, CA) by EcoRI and KpnI, which gave a 2.1-kb EcoRI fragment and a 0.9-kb EcoRI + KpnI fragment. This 0.9-kb fragment was directionally cloned into the P{UAST} vector, which was cut by EcoRI and KpnI. The product of the P{UAST} plus the 0.9-kb insert was digested by EcoRI and then ligated with the 2.1-kb EcoRI LD13770 fragment. The clones with correct cloning orientation were identified by using XhoI and NotI double digestions; the released fragment sizes were 1.96 kb (correct orientation) and 0.74 kb (wrong orientation). This transgene was designated UAS-sbb. The same cloning approach was used to clone the LD13770 insert that was released from the P{UAST} + LD13770 insert into P{CaSpeR-hs} by using EcoRI and XbaI polylinker sites. This transgene construct was called hs-sbb. Both P{UAST} and P{CaSpeR-hs} have a mini w+ gene as a selectable marker. The P{CaSpeR-hs} has a hsp70 promoter, which allows both heat-induced expression and often leaky expression of the inserted open reading frame (ORF; ![]()
Fly transformation, crossing, and heat shock:
P-element-mediated germ-line transformation was done as described by ![]()
25.7wc
2-3 at 0.2 µg/µl (![]()
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| RESULTS |
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Behavior-genetic analysis of scribbler:
The scribbler mutant was found by screening the ![]()
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The P-element insertion in sbbl(2)03432 was localized to the region 55C1-2 on the Drosophila polytene chromosome (BDGP). We co-localized scribbler behavior to this region using complementation analysis with the deficiency Df(2R)Pc4/CyO whose breakpoints are 55A-55F. Sixty percent of scribbler/Df(2R)Pc4 larvae (n = 67) exhibited scribbler behavior. None of the sbb/CyO (n = 53) or Df(2R)
(n = 47) larvae exhibited this phenotype. The control strains forR and fors did not exhibit scribbler behavior in our mutagenesis and behavioral screen. However, two other control strains used later in this study for complementation and rescue experiments, w1 and ry506, did exhibit a low percentage of scribbler behavior (15 and 7%, respectively).
P-element excision demonstrated that the P-element insertion in sbbl(2)03432 was responsible for scribbler behavior and pupal lethality. Twenty-four excision lines yielded viable fertile progeny while one (sbbJ2) caused homozygous lethality during the embryonic or early (first or second instar) larval stage. Normal larval locomotion was restored in the six viable sbb excision lines (J6, J9, J10, J12, J13, J17) that were tested on agar (Fig 2A). The sbbl(2)03432 mutation resulted in late-stage pupal lethality with 10% of the pupae emerging from the pupal case but dying within 3 days of emergence. These adult escapers lacked part of a wing vein at the end of L5.
The pupal lethal phenotypes of sbbl(2)03432, sbbl(2)04440, and sbbl(2)k00702 did not complement, confirming the lethal complementation analysis reported by BDGP. Tests of larval locomotion showed that (1) larvae of all strains (sbb1(2)04440, sbb1(2)k00702, and sbbEP(2)0328) exhibited scribbler behavior and (2) the scribbler behavior of larvae with the original sbbl(2)03432 allele did not complement with the scribbler behavior of larvae with the other three sbb alleles (sbbl(2)04440, sbbl(2)k00702, and sbbEP(2)0328; Fig 2B). These genetic data and the lack of complementation of all the pleiotropic phenotypes associated with the original sbbl(2)03432 allele strongly suggested that the P-element insertions in these four independently generated mutant strains disrupted the same gene. This was confirmed by our molecular analysis of the sbb microregion described below.
Genomic organization of the sbb microregion and localization of P-element insertions:
Fig 3 shows a map of the scribbler microregion. Our analysis of the region shows that sbb spans >50 kb of genomic DNA. The scribbler mutant sbbl(2)03432 was generated using a P{PZ} transposable element. Thus we were able to clone the DNA sequence that flanked the transposon insertion using plasmid rescue (![]()
genomic clones (
dash) that covered an ~20-kb region around the sbbl(2)03432 insert. The EcoRI resriction map of the region is shown in Fig 3. We found three overlapping P1 clones (DS01974, DS02561, and DS08374) from this region 55C (BDGP). The insertion sites of the sbb mutant (sbbl(2)04440, sbbl(2)04525, sbbEP(2)0328, and sbbl(2)k00702) alleles are shown (Fig 3). sbbEP(2)0328 is a homozygous viable strain with a P-element insertion about 120 bp away from sbbl(2)03432 (BDGP). Sequence analysis of a plasmid rescue product from sbbl(2)k00702 showed that it was 1.24 kb away from sbbl(2)03432. The insertions in the sbbl(2)04440 and sbbl(2)04525 were located more than 40 kb away from sbbl(2)03432. sbbl(2)04525 was inserted in the ORF; unfortunately, this mutant is no longer available. All other sbb alleles were found in the 5' end of the gene. A 1.2-kb fragment (shaded box in Fig 3) plasmid rescue product from sbbl(2)03432 mapped to P1 clone DS01974. Southern blot analysis showed that DS01974 overlapped with DS02561 (data not shown) and DS02561 overlapped with DS08374 (BDGP). Twelve incomplete cDNA clones were identified from larval, pupal, and ovary cDNA libraries using the 1.2-kb EcoRI fragment (shaded box) as a probe to screen larval, pupal, adult, and ovary cDNA libraries (![]()
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sbb transcripts are expressed throughout development and are reduced in sbb mutants:
The 3-kb EST clone LD13770 (to be called sbb-cDNA LD13770) was used in Northern blot analysis to probe wild-type (forR) poly(A)+ RNA isolated from larvae, pupae, adult head, and adult body (Fig 4A). sbb RNA is expressed at all stages of development. Three transcripts (10.5, 3.6, and 1.6 kb) were detected in larvae, pupae, and adult heads, whereas the 7.8-, 3.6-, and 1.6-kb transcripts were detected in adult body (Fig 4A). We have not yet characterized the 7.8-kb and 1.6-kb transcripts. These different-sized transcripts suggested the involvement of alternative splicing, transcript initiation, or termination. Northern analysis using the same sbb-cDNA LD13770 probe showed a reduction in the abundance of mRNA in homozygous sbbEP(2)0328 compared to larvae of the CS control strain (Fig 4B). Similar results were found for sbbl(2)03432 and sbbJ2, the early larval lethal excision line, which carries a >10-kb deletion (data not shown).
sbb transcripts are expressed in the embryonic and larval CNS and the larval imaginal discs:
In situ hybridization to CS embyros with antisense RNA from sbb-cDNA LD13770 revealed that sbb is expressed in the embryonic central nervous system (CNS; Fig 5A, Fig C, and Fig E). This expression was not found in CS when probed with sense RNA (Fig 5B, Fig D, and Fig F), demonstrating that the hybridization found in Fig 5A, Fig C, and Fig E was representative of sbb RNA expression. Wild-type sbb expression was strong in early stage embryos (stage 5) before gastrulation (Fig 5A). In larvae, wild-type sbb RNA expression was found in the nervous system including the brain, the optic lobes, the ring gland, and the medial region of ventral ganglion (Fig 5G). We also found expression in the eye-antennal (Fig 5H), wing (Fig 5I), and leg discs (Fig 5J). RNA was expressed at normal levels in heterozygous embryos (Fig 5K and Fig M), but expression was reduced in homozygous mutant embryos of sbbl(2)04440, sbbl(2)03432, and sbbEP(2)0328 (Fig 5L, Fig N, and Fig O). sbbl(2)04440 appeared to have a more severe reduction in transcript abundance than did sbbl(2)03432 and sbbEP(2)0328. Expression of sbb RNA in sbbEP(2)0328 larvae was reduced in the brain and missing in the medial region of the ventral ganglion (Fig 5P).
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Expression of hs-sbb rescues sbb mutant behavior, pupal lethality, and the wing vein phenotype:
To correctly identify the transcript responsible for scribbler behavior and lethality we expressed the full ~3-kb ORF encoded by the EST clone LD13770 in transgenic flies. The cloning ensured that only the RNA from the 3.6-kb transcript was being overexpressed in transgenic flies (see MATERIALS AND METHODS). Northern blot analysis confirmed that the 3-kb hs-sbb transgene was expressed in larvae. sbb-cDNA LD13770 was used to probe poly(A)+ RNA from CS and hs-sbb transgenic larvae. Fig 6A shows the leaky expression of the hs-sbb transgene in two independent transgenic strains in the sbbEP(2)0328 background at 25° (Fig 6A, lanes 3 and 5) and the expected very large increase in expression of the transgene after 37° heat shock (Fig 6A, lanes 4 and 6). We concluded that (1) the transgene cloned in the P{CaSper-hs} was functioning as expected, (2) the 3-kb transgene alone was overexpressed in larvae, and (3) we could rely on the leaky expression of this transgene for our behavioral experiments. Indeed, scribbler behavior was rescued by the hs-sbb transgene. Two independent transgenic strains carrying the hs-sbb transgene in the sbbEP(2)0328 mutant background showed a reduction in the mean percentage of scribbler larvae on agar relative to the sbbEP(2)0328 mutant strain (Fig 6B) and an increase in the number of grid squares entered on agar (Fig 6C). Thus the hs-sbb transgene restored sbb mutant behavior to wild type on agar. hs-sbb transgenes also fully rescued pupal lethality in the w1; sbbl(2)03432/CyO; ry506 mutant background. These rescued sbb flies were completely fertile. The wing vein phenotype was restored to normal when four (but not two) copies of the hs-sbb were present in flies reared at 25°.
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Rescue of sbb behavior by targeting expression of the 3-kb sbb transcript to neurons:
In situ hybridization revealed that the sbb gene was expressed in the embryonic and larval CNS (Fig 5). The P[GAL4] system was used to manipulate gene expression (![]()
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sbb transcripts encode a novel protein:
DNA sequencing revealed that the 3.6-kb sbb transcript contains a long open reading frame encoding 929 amino acids (Fig 7). A ScanProsite search revealed that this 929-amino-acid protein contains 2 putative cAMP/cGMP-dependent protein kinase phosphorylation sites, 15 protein kinase C phosphorylation sites, and 7 casein kinase II phosphorylation sites. A PSORT (prediction of protein sorting signals and localization sites in amino acid sequences) search revealed two nuclear localization signals at position 840 (PPAKRVK) and position 841 (PAKRVKH) with 94.1% reliability. This suggested that the SCRIBBLER protein is a nuclear protein. No homology was found with any known protein in the database when a BLASTP search of this deduced amino acid sequence was done. However, a BLASTN search did reveal four EST clones isolated from mouse heart (AI644380, AI614389), Xenopus neurula (AI031376), and human (AI223051) that were highly homologous (7090% identity) with the C-terminal region of the SCRIBBLER protein. These data suggest the existence of SCRIBBLER counterparts in vertebrates.
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The 10.5-kb transcript contains a larger open reading frame (encoding 2302 amino acids) than the 3.6-kb transcript. The first 929 amino acids encoded by the 10.5-kb transcript are the same as the protein encoded by the 3.6-kb ORF. SCANPROSITE revealed that this larger protein contained one single zinc finger (C2H2 type) domain and one tyrosine kinase phosphorylation site that are not part of the first 929 amino acids shared with the 3.6-kb transcript. The PSORT search reveals five nuclear localization signals in this larger 2302-amino-acid protein. A BLASTP search of this deduced amino acid sequence showed homology with a human EST clone (AB002293) that contained a single zinc finger motif that had 70% identity within 30 amino acids in the zinc finger region. This human EST clone was originally isolated from a male brain cDNA library (![]()
| DISCUSSION |
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Our genetic dissection of larval behavior has uncovered sbb, a new vital gene that encodes a novel protein that is expressed in the nervous system. Behavioral and neurogenetic evidence suggests that sbb plays a role in larval turning behavior. It is of interest that the scribbler turning phenotype was displayed only in the absence of food, since turning rate and localized traveling are known to be important components of food search behavior (![]()
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Many developmental genes are known to be pleiotropic; their gene products play multiple roles throughout development (for example, ![]()
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sbb is a pleiotropic gene with a vital function. Four out of five (sbbl(2)03432, sbbl(2)04440, sbbl(2)k00702, and sbbl(2)04525 but not sbbEP(2)0328) P-element insertion alleles of sbb exhibited lethality, primarily in the late pupal stage. Mutations in the sbb gene lead to multiple phenotypic defects that include larval scribbler behavior, pupal lethality, and a defect in the pattern of the L5 wing vein in the adult escapers. sbb transcripts were observed in all developmental stages (Fig 4A) and in multiple tissue types (the embryonic and larval CNS and the imaginal discs; Fig 5). These expression data support the phenotypic data suggesting that sbb likely functions during multiple developmental stages and in more than one tissue. The four different-sized transcripts (Fig 4A) suggest the existence of at least four different SCRIBBLER isoforms that may arise from differential RNA splicing or alternative polyadenylation or initiation. Although we have not investigated this, we predict that some of these isoforms will have different functions and be found in different tissue. Some initial support for this prediction comes from the finding of a body-specific transcript (7.8 kb; Fig 4A) and from the lack of complete rescue of pupal lethality when sbb was only targeted to neuronal cells. Further studies are needed to address the question of how, when, and where sbb acts to accomplish its pleiotropic functions.
Our in situ hybridization showed that wild-type sbb RNA is expressed in the embryonic and larval CNS and larval imaginal discs (Fig 5). Two pupal lethal homozygous mutant sbb embryos, sbbl(2)03432 and sbbl(2)04440, showed little to no expression whereas the viable mutant strain sbbEP(2)0328 may have altered expression (Fig 5). Larval in situ hybridization of sbbEP(2)0328 also revealed a significant reduction in RNA abundance in the CNS, ventral ganglion (Fig 5P), and imaginal discs (data not shown). These data suggest that sbb mutants suffer from a disorder originating from disruptions in the nervous system. This was confirmed by the restoration of normal larval behavior with a UAS-sbb transgene expressed in neurons using an elav-GAL4 driver (Fig 6D and Fig E). Targeted expression of sbb to the muscle was not needed to rescue scribbler behavior.
Sequence analysis of the 3.6-kb and 10.5-kb transcripts revealed that they differ in both their start and termination sites. Their deduced amino acid sequences are identical at the N-terminal end. The 10.5-kb transcript, when compared to the 3.6-kb transcript, encodes an additional 1373 amino acids at the C-terminal end. We found that both the 3.6-kb and 10.5-kb gene products are novel proteins that are most likely localized within the nucleus. The large form contains one zinc finger C2H2 type motif that is different from the zinc finger domains found in numerous nucleic acid-binding proteins that have two or more sets of zinc finger motifs (![]()
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Differential RNA splicing and post-translational cleavages can generate a large number of protein isoforms (![]()
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Note added in proof: The scribbler gene reported here is synonymous with the brakeless gene reported in K.-A. SENTI, K. KELEMAN, F. EISENHABER and B. J. DICKSON (2000, brakeless is required for lamina targeting of R1-R6 axons in the Drosophila visual system. Development 127: 22912301).
| ACKNOWLEDGMENTS |
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We thank Barry Dickson for sharing the sbb 10.5-kb sequence data, C. F. Wu, R. Greenspan, C. Riedl, and H. Kuniyoshi for comments on an early version of this manuscript; C. Riedl and H. Kuniyoshi for help with the figures; J. Hu for doing injections to make the transgenic strains; A. Samardzic, H. Belay, H. Kuniyoshi, and K. Osborne for technical help; G. Boulliane for the hs-GAL4 strain and for help with capturing the images in Fig 5; R. Davis for the genomic library; P. Lasko for the P1 clones; and all the members of the larval behavior test-tag team. The Bloomington Drosophila Stock Center provided fly strains and the Berkeley Drosophila Genome Project provided strains and sequence and clone information. Research was supported by Natural Sciences and Engineering Research Council of Canada grants to A.J.H. and M.B.S.
Manuscript received February 4, 2000; Accepted for publication March 20, 2000.
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