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Recombination of Chromosomes 3Am and 5Am of Triticum monococcum With Homeologous Chromosomes 3A and 5A of Wheat: The Distribution of Recombination Across Chromosomes
Ming-Cheng Luoa, Zu-Li Yanga, Rama S. Kotaa, and Jan Dvo
áka
a Department of Agronomy and Range Science, University of California, Davis, California 95616
Corresponding author: Ming-Cheng Luo, Department of Agronomy and Range Science, University of California, Davis, 1 Shields Ave., Davis, CA 95616-8515., mcluo{at}ucdavis.edu (E-mail)
Communicating editor: J. A. BIRCHLER
| ABSTRACT |
|---|
Recombination of chromosomes 3Am and 5Am of Triticum monococcum with closely homeologous chromosomes 3A and 5A of T. aestivum was compared with recombination across corresponding homologous chromosome pairs. Differentiation between the homeologues impacted recombination in the proximal regions of the long arms the most and in the distal regions of the long arms the least. It is concluded that this variation principally reflects allocation of multiple crossovers across an arm and positive crossover interference across chromosome arms. Recombination rates between homeologous chromosomes 5Am and 5A differed in the opposite sexes.
ACCUMULATION of mutations during species divergence impairs the capacity of homologous chromosomes for meiotic crossing over, resulting in chromosome differentiation and, ultimately, conversion of homologous chromosomes to homeologous chromosomes. Originally, mutations in chromosome structure perturbing the linear order of gene loci across chromosomes were considered the primary cause of chromosome differentiation. If genomes differentiated structurally, genome differentiation would occur in discrete steps. Differentiated, closely related genomes would be composed of homologous and homeologous (structurally rearranged) chromosomes and homeologous chromosomes would be composed of homologous and structurally rearranged segments. This point of view is intrinsic to classical concepts such as segmental allopolyploidy and structural and cryptic structural differentiation (![]()
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In allopolyploid plants, chromosome differentiation is the target of the activity of the suppressors of heterogenetic chromosome pairing, which prevent meiotic pairing and recombination between homeologous chromosomes and ensure disomic inheritance. The best-known suppressor of heterogenetic pairing is the wheat Ph1 locus on the long arm of chromosome 5B (![]()
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A relevant question is whether differentiation impacts recombination between a pair of homeologous chromosomes across their lengths evenly, or if it reduces recombination to a greater extent in some regions than others. ![]()
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To assess recombination rates across the entire length of wheat and T. monococcum homeologues, complete T. monococcum chromosomes 3Am and 5Am were substituted for chromosomes 3A and 5A of T. aestivum. Recombination rates between 3Am and 3A and 5Am and 5A were assessed and compared with those between corresponding homologous chromosomes.
| MATERIALS AND METHODS |
|---|
Disomic substitution lines:
Chromosomes 3Am of T. monococcum accession no. G2203 and 5Am of T. monococcum accession no. G1777 were substituted for chromosomes 3A and 5A of T. aestivum "Chinese Spring" (henceforth, CS), respectively, following a procedure described by ![]()
The study of recombination between homologues involved DS5Aspelta and DS3ACnn. In the former line, chromosome 5A of Iranian spelt (T. aestivum ssp. spelta) accession no. 407a (![]()
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Mapping populations and their development:
The maps employed in this work were constructed from segregating populations of single-chromosome recombinant substitution lines (RSLs). RSLs are lines in which a chromosome pair is replaced by a recombined monosome (monosomic RSL) or disome (disomic RSL). The strategy for the development of populations of wheat RSLs has been described (![]()
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Restriction fragment length polymorphism (RFLP) and map construction:
Nuclear DNAs were isolated from individual plants of RSLs (![]()
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Chromosome analyses:
DS3Am and DS5Am were crossed with CS, and the total number of bivalents per cell at MI of meiosis was assessed under microscope in the progeny using the acetocarmine squash technique.
| RESULTS |
|---|
Group 3 chromosomes:
T. monococcum chromosome 3Am recombined with CS chromosome 3A in the presence of the Ph1 locus with a reduced rate (Fig 1). While the total length of the DS3Am x CS map was only 45.6 cM, the total length of the same intervals on the map of chromosome 3Am constructed in T. monococcum was 144.5 cM (Fig 1). The T. monococcum map is similar to the map of T. aestivum chromosome 3A (![]()
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Recombination across the short arm was reduced to a half on the DS3Am x CS map compared to that on maps based on recombination between homologues (Fig 1). A reduction of a similar size in recombination was observed in the distal region of the long arm. However, in the proximal region, Xpsr909 to Xwg110, recombination was reduced to one-ninth (Fig 1).
Group 5 chromosomes:
In the Ph1 background, a map based on recombination between 5Am and 5A in the male was 64.3-cM long (Fig 2). In contrast, a map based on recombination between wheat 5A homologous chromosomes (also in the male) was 233-cM long, and the F2 T. monococcum 5Am map was 191-cM long.
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In the short arm, recombination between 5Am and 5A was 13.5- and 18.6-fold lower than recombination in the DS5Aspelta x CS population and the T. monococcum F2 population, respectively. Compared to the maps of the short arm based on recombination between homologues, the distal intervals on the DS5Am x CS map were reduced more than the proximal intervals (Fig 2).
In the long arm, recombination between 5Am and 5A in the distal intervals was either comparable to recombination between homologues (intervals XksuF1-Xwg114-Xwg199) or was only slightly reduced. However, in the proximal interval, interval Xbcd508-XksuH8, recombination was manyfold lower than that between homologous chromosomes (Fig 2).
A map based on recombination between 5Am and 5A in the female was only 26-cM long (Fig 3). This is less than half of the length of the map based on recombination between the same chromosomes in the male (compare Fig 2 and Fig 3). The pattern of recombination rates across the map based on female recombination was similar to that on the map based on male recombination, with the exception that there was an absence of recombination in the XksuF1-Xwg114 interval in the long arm. The same interval was 12.2 cM on the male map.
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In the ph1b background (Fig 3), extensive recombination occurred between 5Am and 5A in all intervals. The map was a total of 239.8-cM long, and in no interval did the map differ significantly from the corresponding maps based on recombination between homologues.
Segregation distortions:
No segregation distortion was observed in RSL population DS3Am x CS. In RSL populations DS5Am x CS, segregation distortion occurred across the entire short arm and a proximal portion of the long arm (Fig 2 and Fig 3). Chromosome 5Am was favored in the male, but CS 5A was favored in the female.
Chromosome pairing and transmission of nullisomic gametes:
In F1 plants from crosses of DS3Am and DS5Am with CS, 80% of the investigated 63 PMCs and 90% of the investigated 67 pollen mother cells (PMCs) had 21 bivalents, respectively. These values represent a minimum pairing level of 3Am and 5Am with wheat chromosomes 3A and 5A, respectively, since other chromosomes may have occasionally failed at pairing at MI as well.
In the DS5Am x CS (F) backcross population constructed in the Ph1 background, 15.7% progeny were monosomic for 5A. These plants originated from female nullisomic gametes, which in turn originated from the failure of chromosomes 5Am and 5A to pair at MI. PMCs with nondisjunction produce, on the average, 3/4 nullisomic gametes (![]()
In the DS5Am x CS male backcross population constructed in the Ph1 background, no plant indicating that a nullisomic gamete was transmitted was observed. This is expected because of severe selection against nullisomic gametophytes in the male. Unexpectedly, no nullisomic gametes were transmitted in the ph1b female backcross progeny, presumably due to lethal effects on female gametophytes of simultaneous nullisomy for chromosome 5A and the ph1b deletion mutation.
| DISCUSSION |
|---|
Since the T. aestivum A genome was contributed by T. urartu Thum., a diploid species closely related to T. monococcum, the T. monococcum genome and the A genome of T. aestivum exemplify genomes of two closely related diploid species (![]()
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Yet, in the Ph1 background, recombination between the genetic material of T. monococcum and that of the A genome was reduced or absent in virtually all investigated intervals (present data; ![]()
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In the study reported by ![]()
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A possible cause of these patterns is the hierarchy of crossovers within an arm. In general, the preferred position of the first crossover is distal in wheat chromosomes. This accounts for the great distortions of wheat linkage maps relative to metaphase chromosome maps (![]()
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The linkage map of the long arm of chromosome 5 is longer than that of any other chromosome arm within each of the wheat genomes. On the T. monococcum linkage map, the interval XksuF1-Xwg114, which is in the middle of the long arm, is in a region showing compression of markers (![]()
The centromeric interval Xcdo57-XksuH8 showed no recombination in both the male and female. However, interval XksuF1-Xwg114, which did not recombine in the female, recombined in the male at the same rate as other distal intervals, suggesting a difference in the perception of chromosome differentiation between male and female meioses.
Another difference in the perception of chromosome differentiation between male and female meioses in the Ph1 background is apparent from the total map lengths. The male map was more than twice as long as the female map. It is very unlikely that the difference was caused by the lack of transmission of nullisomic male gametes originating from incomplete pairing between 5Am and 5A. Since the 5Am and 5A chromosomes paired in close to 90% PMCs, the overestimation of recombination in the male backcross would account for only a few percent (![]()
Our conclusions about the distribution of recombination between homeologous chromosomes as compared to homologous chromosomes reported here and previously (![]()
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An example illustrating that confounding factors may modify the basic pattern in specific chromosome pairs is provided by the distribution of recombination between 5Am and 5A across the short arm. In this arm, the recombination rate in the distal region was lower than the recombination rate in the proximal region when compared to homologous recombination. This anomaly could simply be sampling error (although the same pattern was observed in two different DS5Am x CS populations) since the observed recombination pattern was generated by a single crossover in the proximal interval (XksuH8-Xabg705) in each population. It is also possible that the deletion of the Nor-11 locus from the terminus of the wheat chromosome arm 5AS (![]()
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| ACKNOWLEDGMENTS |
|---|
The authors express their gratitude to M. D. Gale, A. Graner, M. E. Sorrells, and B. S. Gill for supplying clones. The authors acknowledge financial support from the United States Department of Agriculture National Research Initiative Competitive Grant Program by grant 96-35300-3822 to J. Dvo
ák.
Manuscript received September 13, 1999; Accepted for publication November 8, 1999.
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2), respectively. * and ** next to parentheses indicate that the length of an interval in terms of recombination between homologous chromosomes is significantly different from the length of the same interval measured in terms of recombination between homeologous chromosomes at the 5% and 1% probability levels, respectively. No polymorphic marker was found within intervals XksuH8-Xbcd508 and Xcdo504-XksuF1, which were
50 cM on the DS5Aspelta x CS map. The positions of these markers on the DS5Aspelta x CS map was inferred from the other two maps.


