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Linkage Analysis of Sex Determination in Bracon sp. Near hebetor (Hymenoptera: Braconidae)
Alisha K. Hollowaya, Michael R. Strandb, William C. Black, IVc, and Michael F. Antolinaa Department of Biology, Colorado State University, Fort Collins, Colorado 80523,
b Department of Entomology, University of Wisconsin, Madison, Wisconsin 53706
c Department of Microbiology, Colorado State University, Fort Collins, Colorado 80523
Corresponding author: Michael F. Antolin, Department of Biology, Colorado State University, Fort Collins, CO 80523., antolin{at}lamar.colostate.edu (E-mail)
Communicating editor: Z-B. ZENG
| ABSTRACT |
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To test whether sex determination in the parasitic wasp Bracon sp. near hebetor (Hymenoptera: Braconidae) is based upon a single locus or multiple loci, a linkage map was constructed using random amplified polymorphic DNA (RAPD) markers. The map includes 71 RAPD markers and one phenotypic marker, blonde. Sex was scored in a manner consistent with segregation of a single "sex locus" under complementary sex determination (CSD), which is common in haplodiploid Hymenoptera. Under haplodiploidy, males arise from unfertilized haploid eggs and females develop from fertilized diploid eggs. With CSD, females are heterozygous at the sex locus; diploids that are homozygous at the sex locus become diploid males, which are usually inviable or sterile. Ten linkage groups were formed at a minimum LOD of 3.0, with one small linkage group that included the sex locus. To locate other putative quantitative trait loci (QTL) for sex determination, sex was also treated as a binary threshold character. Several QTL were found after conducting permutation tests on the data, including one on linkage group I that corresponds to the major sex locus. One other QTL of smaller effect had a segregation pattern opposite to that expected under CSD, while another putative QTL showed a female-specific pattern consistent with either a sex-differentiating gene or a sex-specific deleterious mutation. Comparisons are made between this study and the in-depth studies on sex determination and sex differentiation in the closely related B. hebetor.
SEX determination in most Hymenoptera is via haplodiploidy: males develop parthenogenetically from unfertilized haploid eggs while females develop from fertilized diploid eggs. In some (chalcidid) Hymenoptera, haplodiploid sex determination likely depends upon a mechanism of genomic imprinting (![]()
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The molecular genetic mechanism that triggers CSD has yet to be identified (![]()
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CSD was first characterized in the parasitoid wasp B. hebetor (![]()
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| MATERIALS and METHODS |
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Source of insects:
Bracon sp. near hebetor (Hymenoptera: Braconidae) is a parasitoid wasp that attacks moth larvae in a number of lepidopteran families. This wasp was originally identified as B. hebetor, but the two species have been shown to be reproductively isolated and genetically distinct (![]()
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During general colony maintenance, a spontaneous recessive light body color mutation arose in our B. sp. near hebetor culture that was described as blonde (bl; ![]()
The marker was used to help map the position of the sex locus. Several backcross families that included both females and diploid males were generated by reciprocal crosses between laboratory populations with the two body colors. Mated females were allowed to oviposit for 5 days on P. interpunctella fifth instar larvae while their male mates were fed honey and kept in an incubator at 22° to prolong life span. F1 females were then backcrossed to these males and provided P. interpunctella hosts for 1014 days of oviposition. Both male and female backcross progeny were collected and frozen at -80° for molecular analysis. Wasps were housed in environmental chambers at 28°, 16L:8D, and 70% humidity [see ![]()
Two families were selected for analysis based on the size of the backcross generation, one heterozygous (+/bl female) x blonde (bl male) backcross family (12A) and one heterozygous (+/bl female) x wild-type (+ male) backcross family (16W). From family 12A, 39 diploid males and 40 females were used, and 40 diploid males and 40 females were used from family 16W. The body color mutation was mapped in family 12A.
Initially, four RAPD primers were used to screen for possible diploid males by identifying males with heterozygous genotypes at codominant loci (all primers from Operon Technologies, Alameda, CA). Diploid males are necessary for determining the placement of the sex locus because of cosegregation of linked markers. Markers closely linked to the sex locus will have low recombination rates and segregate with sex alleles in the cross. If diploid males are homozygous at the sex locus, they should also be homozygous for closely linked RAPD markers. In contrast, females that are heterozygous at the sex locus should be heterozygous for linked RAPD markers.
DNA isolation:
DNA was isolated by salt extraction following the protocol of ![]()
PCR amplification:
RAPD-PCR protocols were as described in ![]()
Electrophoresis to detect SSCP:
SSCP analysis and silver staining protocols were as described in ![]()
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Gel scoring:
Amplified fragments were scored directly from dried gels by measuring band mobility relative to a 1-kb size marker (BRL Laboratories). To estimate sizes of the amplified DNA fragments, size standards were fitted to an inverse function that relates fragment size and mobility (![]()
Data analysis:
The data include RAPD markers with both codominant and dominant alleles. Codominant markers are informative in a backcross as long as the F1 mother inherits different alleles from the P1 mother and father. For typical RAPD markers, where the presence of a band is dominant, a marker is informative only if the dominant-band-present allele is inherited from the P1 mother. Therefore, the genotypes of backcross progeny are scored as either A (homozygous for alleles from the P1 father) or H (heterozygous). All markers were informative in all individuals because exact genotypes for progeny could be determined and because the phase of all markers was known.
Offspring genotypes were entered into JOINMAP v2.0 and coded as a backcross (![]()
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The trait sex was examined in two different ways. First, sex was treated as a single locus as expected under CSD, with males coded as A (homozygotes) and females as H (heterozygotes). Second, sex was treated as a quantitative trait scored as 0 (male) or 1 (female). Mapping QTL for binary traits using linear regression has been proven effective, especially for backcross populations (![]()
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In addition, to determine threshold LOD scores for accepting the presence of a QTL and estimate the relative effects of the QTL, the data from each family were analyzed using a maximum-likelihood mixture model, which uses a probit analysis of binary traits (![]()
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| RESULTS |
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A linkage map of B. sp. near hebetor:
A total of 24 RAPD primers resulted in a large number of repeatable amplified fragments (Table 1). There were, on average, 14.8 (±1.3 SE) fragments per primer in family 12A and 17.2 (±1.9 SE) in family 16W. Polymorphic fragments used in the analysis ranged in size from 235 to 2855 bp. In family 12A there were 3.7 (±0.4 SE) polymorphic bands per primer and 2.4 (±0.4 SE) in family 16W. Family 12A had 88 polymorphic RAPD markers; 72 of these were informative for mapping. Only 9 of the 24 primers were used in family 16W because the grandparents shared many of the same RAPD alleles resulting in fewer polymorphic loci in the backcross. The 9 primers used in family 16W resulted in 29 polymorphic RAPD markers and 22 of these were informative for mapping. Only 10 of the markers shared between the two families were polymorphic in both families, giving a total of 84 RAPD markers used in the analysis. Of these, 62% were codominant. According to
2 goodness-of-fit tests, segregation ratios of 4 of the 84 markers deviated significantly from expected ratios (i.e., 1:1) after correction for multiple comparisons (
2
10.83, d.f. = 1, P < 0.05; ![]()
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The final map, with grouping LOD of 3.0, included 71 RAPD markers, the phenotypic marker blonde, and the sex locus. Bracon species are known to have 10 chromosomes (![]()
QTL analysis of sex:
When sex was treated as a single locus and included in linkage analysis, a single locus identified on linkage group I included the sex locus with two flanking markers (A13.310 and A13.575) 29.7 and 12.8 cM away (Fig 1).
When sex was treated as a quantitative trait, several putative QTL were found at LOD > 2.0 on linkage groups I, III, and V (Table 2). To further examine markers surrounding the putative QTL, two flanking markers on each side were tested for segregation patterns that differed between the sexes (Table 2). Linkage group I had a QTL located between the same markers that flanked the sex locus when sex was treated as a single locus. Segregation of all markers on this group was consistent with complementary sex determination, with significantly more heterozygous females and homozygous males than expected by chance (see Table 2; G = 144.49, d.f. = 1, P < 0.001, all probabilities adjusted for experiment-wise error). Markers on linkage group III had a pattern opposite to that expected from CSD, with more heterozygous males and homozygous females than that expected by chance (overall G = 28.37, P < 0.05). This pattern was found in both family 16W (G = 35.18, P < 0.05), where a statistically significant QTL was found (see below), and in family 12A (G = 6.33, P < 0.10).
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The third putative QTL on linkage group V showed a sex-specific segregation pattern; markers surrounding B1.690 had significantly too few heterozygous females (G = 9.0, P < 0.004). This pattern is consistent with segregation of either a sex-specific deleterious allele (low survival of heterozygous females) or a somatic sex-differentiating gene (homozygous individuals develop female characteristics).
Analysis of the data via probit analysis in the mixture model, using BINARYQTL (![]()
Finally, BINARYQTL provides estimates of the genetic variance associated with each QTL, and this analysis showed that the QTL on linkage group I must correspond to the major sex locus underlying complementary sex determination. The genetic variance associated with the sex locus QTL on linkage group 1 was 420.25, compared to genetic variance of 0.27 for linkage group III and 0.28 for linkage group V. In family 16W the genetic variance associated with the sex locus QTL was 1.42, compared to a variance of 0.32 for the QTL on linkage group III, and a variance of 0.05 for the marker on linkage group V. Even without converting these values to the correct scale underlying sex, it is clear that >75% of the genetic variance in sex arose from the sex locus QTL on linkage group I.
| DISCUSSION |
|---|
Sex determination, linkage analysis, and QTL:
When sex was treated as a Mendelian locus under CSD and scored as homozygotes (male) or heterozygotes (female), it unambiguously mapped to the small linkage group I. The QTL analysis of both families (12A and 16W) adds support to the hypothesis of a major sex-determining gene on linkage group I. ![]()
These data are consistent with a single gene being responsible for sex determination, but with other sex-differentiating and sex-specific genes found elsewhere in the genome. The data are inconsistent with purely single-locus CSD. In many sexually reproducing organisms, other genes work in concert with the sex-determining genes or act as modifiers of sex determination and regulators of somatic sexual differentiation (![]()
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This result also compares favorably with results from the closely related B. hebetor. In that species, not only was the sex locus described (![]()
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Polymorphisms and linkage patterns:
This genomic analysis of B. sp. near hebetor again demonstrates the high resolution of RAPD markers when analyzed as SSCP on large-format polyacrylamide, as was seen in B. hebetor and the mosquito Aedes aegypti (![]()
As has been reported in other linkage studies using RAPDs (![]()
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Comparison of B. sp. near hebetor and B. hebetor:
Because B. sp. near hebetor and B. hebetor are closely related, we may expect them to have similar-sized genomes. The total map lengths of two previous studies of B. hebetor are 625 cM for a morphological map (![]()
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Part of the difference in the map lengths from the two programs arises from different algorithms for estimating distances between markers. The JOINMAP algorithm uses local weighting of the two flanking markers on either side of the interval to be estimated, with weights based on LOD (![]()
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Even when differences between mapping algorithms are taken into consideration, differences in map lengths between B. hebetor and B. sp. near hebetor remain. Several possibilities exist for the discrepancy in map lengths. First, the addition of four markers that grouped at LOD < 3.0 in the previous studies (![]()
The placement of the major sex locus seems to differ in B. hebetor and B. sp. near hebetor. While we found that the major sex locus is on a small linkage group in B. sp. near hebetor, the sex locus in B. hebetor was reported to be on a large linkage group (![]()
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An important difference between B. hebetor and B. sp. near hebetor is that diploid males in B. hebetor are usually inviable, while they have high survival in B. sp. near hebetor. The viability of diploid males varies among Hymenoptera, which may indicate that if sex is determined by CSD in most bees, ants, and wasps, the pathways of sexual differentiation may differ among them (![]()
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| ACKNOWLEDGMENTS |
|---|
We thank J. Herbers, T. T. Vaughn, and S. Xu for technical assistance and helpful discussions. This work was supported by United States Department of Agriculture-National Research Initiative competitive grant 94-37312-0062 to M.F.A. and M.R.S.
Manuscript received November 19, 1998; Accepted for publication September 7, 1999.
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- THIS ARTICLE
-
Abstract
- Full Text (PDF)
- Alert me when this article is cited
- Alert me if a correction is posted
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- Similar articles in this journal
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to the right of the marker name.
