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Mitochondrial DNA Polymorphism, Sex Ratio Distorters and Population Genetics in the Isopod Armadillidium vulgare
Thierry Rigauda, Didier Bouchona, Catherine Souty-Grosseta, and Roland Raimondaa Université de Poitiers, Laboratoire de Génétique et Biologie des Populations de Crustacés, UMR CNRS 6556, F-86022 Poitiers Cedex, France
Corresponding author: Thierry Rigaud, Université de Poitiers, Laboratoire de Génétique et Biologie des Populations de Crustacés, UMR CNRS 6556, 40 avenue du Recteur Pineau, F-86022 Poitiers Cedex, France., thierry.rigaud{at}campus.univ-poitiers.fr (E-mail)
Communicating editor: A. A. HOFFMANN
| ABSTRACT |
|---|
Two maternally inherited sex ratio distorters (SRD) impose female-biased sex ratios on the wood louse Armadillidium vulgare by feminizing putative males. These SRD are (i) an intracytoplasmic bacterium of the genus Wolbachia, and (ii) another non-Mendelian element of unknown nature: the f element. Mitochondrial DNA variation was investigated in A. vulgare field populations to trace the evolution of host-SRD relationships and to investigate the effect of SRD on host cytoplasmic polymorphism. The Wolbachia endosymbionts showed no polymorphism in their ITS2 sequence and were associated with two closely related mitochondrial types. This situation probably reflects a single infection event followed by a slight differentiation of mitochondria. There was no association between the f element and a given mitochondrial type, which may confirm the fact that this element can be partially paternally transmitted. The spreading of a maternally inherited SRD in a population should reduce the mitochondrial diversity by a hitchhiking process. In A. vulgare, however, a within-population mtDNA polymorphism was often found, because of the deficient spread of Wolbachia and the partial paternal inheritance of the f element. The analysis of molecular variance indicated that A. vulgare populations are genetically structured, but without isolation by distance.
THE last decade led to an ever-increasing amount of evidence of genetic elements altering the reproductive systems in arthropods (![]()
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Mitochondrial DNA is a useful tool for investigating the evolution of associations between cytoplasmic microorganisms and their hosts because both mitochondria and symbionts have the same inheritance pattern (i.e., maternal transmission). The screening and comparison of infected vs. uninfected lineages or individuals can provide data on the history and evolution of the infection. This has been successfully used in the Wolbachia/Drosophila simulans association (e.g., ![]()
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Two feminizing sex ratio distorters are known in the wood louse Armadillidium vulgare: the intracytoplasmic Wolbachia bacterium (![]()
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In this study, 11 populations of A. vulgare were collected with the aim of investigating the impact of sex ratio distorters on the population genetics of the host at a limited geographic scale. We undertook a survey on (i) the prevalence of sex ratio distorters within each population, (ii) the association between mtDNA variation and feminizing elements, and (iii) the genetic population structure inferred from mtDNA variation.
| MATERIALS AND METHODS |
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Animal collection and sex ratio distorter analysis:
Wood lice were collected during the spring of 1993, mainly in the western central region of France, with the exception of the No sample, located near Paris (Figure 1). Each site consisted of enclosed gardens, except the Vi site (an open field), the Sc site (an open field near a golf course), and the Ar site (a beach). At each site, all gravid females (i.e., carrying embryos in their incubating pouch) present on the ground surface or under stones or vegetation were collected. They were allowed to produce offspring in the lab, at 20° and under natural photoperiod conditions. Most of these females produced two successive broods without remating (females store sperm in the genital tracts). Three months after their birth, the sex ratio of the young (males/total offspring) was determined. After the release of their last brood, mothers were tested for the presence of Wolbachia endosymbionts by a physiological test (described in ![]()
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In the Vi site, collections were made in 1993 and 1994. Ten gravid females were collected each year, but, as the results were similar between years, the two samples were pooled for the analysis.
Mitochondrial DNA analysis:
All offspring of each mother were pooled, and mtDNA was extracted from their gonads, fat tissue, and nervous system. This pool significantly increased the amount of DNA available for digestion by restriction enzymes. The total mtDNA was extracted as previously described (![]()
The relationships between mitochondrial haplotypes were estimated using different methods. The divergence between pairs of haplotypes was estimated by computing the number of nucleotide substitutions per site (d) by the method of Nei and Tajima (![]()
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ST, an analogue of Wright's FST, was computed on the whole data set (only two hierarchical levels were recognized: within populations, i.e., within each sampling location, and among populations). The pairwise genetic distances between all pairs of populations were also estimated using
ST. The correlation between genetic distance and geographic distance was tested by a Mantel test (![]()
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Wolbachia diversity analysis:
Three Wolbachia-positive samples were used for symbiont diversity analysis from An, Ce, and Sc locations (see Figure 1). Wolbachia symbionts of wood lice are closely related, especially in the Armadillidiae family. For example, the Wolbachia from A.vulgare, A. nasatum, and A. album had identical sequences for both the ribosomal RNA and ftsZ genes (![]()
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| RESULTS |
|---|
The prevalence of sex ratio distorters and the polymorphism of sex-determining systems:
The sex-determining mechanisms (SDM) were investigated for each female collected from the wild (Figure 2). The sex ratio distorters were present in all locations. High prevalences of females infected by the f factor were found in all populations (ranging from 0.36 to 1), while females infected with the feminizing Wolbachia bacteria were present in only three locations, with prevalence varying from 0.06 to 0.64. With only one exception, Wolbachia-infected females produced highly female-biased progenies. The sex ratio in the broods of the f-infected females was much more variable, as previously analyzed (![]()
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Mitochondrial DNA polymorphism:
As suggested by our restriction fragment length polymorphism (RFLP) patterns (Table 1), the mtDNA of A. vulgare possess a peculiar size and structure. Our results, therefore, cannot be analyzed without some information about the molecular model proposed by ![]()
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XhoI always produced the same restriction profile whatever the A. vulgare line tested while SmaI never cleaved the mtDNA. These enzymes were therefore excluded from the analysis. The combination of RFLPs of the nine remaining enzymes produced 11 haplotypes (Figure 4). The genetic relatedness between these haplotypes revealed that three main clusters of mtDNA are present in A. vulgare French populations, whatever the analysis method used (e.g., Figure 4). These clusters are (i) (Av9, Av10 (Av3, Av4)), (ii) Av11, and (iii) ((Av5, Av6), Av7 (Av1, Av8, Av2)). The bootstrap analysis gave contrasting levels of resolution, the relationships between haplotypes of the group (iii) being less clear than the general branching pattern and the relationships between haplotypes within the (i) group. Lack of resolution is due to incomplete phylogenetic information generated by RFLP patterns and slight differences in haplotypes in the (iii) group. Within each cluster, all haplotypes are nevertheless closely related (d < 0.01).
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Relationships between sex determination and mtDNA polymorphism:
The mtDNA haplotypes were distributed according to sampling locations and according to the sex-determining mechanisms with which they were linked (Table 2). The more prevalent haplotypes were Av3 (distributed in most populations) and Av1 (concentrated in four populations). The most polymorphic population was found in the Sc location, where the sex-determining mechanisms were also the most variable. Three populations showed no mtDNA polymorphism at all (Ij, Sm, and Vi). In these locations, the sample size was small (
10 females collected at each date) and all the females were of the same sex-determining type (f-infected females).
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Wolbachia bacteria were associated only with the two closely related Av1 and Av2 haplotypes (Table 2). To investigate the Wolbachia polymorphism, a sequence of 241 nucleotides was obtained for symbionts issued from each of the three infected populations. These sequences included the whole sequence of ITS2 and the two flanking regions (56 nucleotides of the 3' end of the 23S rRNA gene and the whole 108-bp sequence of the 5S rRNA gene). The An and Sc Wolbachia strains (sequences AJ131642 and AJ131643) were associated with the Av1 host haplotype, whereas the Ce Wolbachia strain (AJ131644) was associated with the Av2 host haplotype (see Table 2). No nucleotide variation was detected between these three Wolbachia sequences.
No link was found between a given mitochondrial lineage and the f factor. In fact, the f factor was detected in all the haplotypes found in this study, although it was found primarily associated with the common Av3 haplotype. In other words, the f-infected females had the greatest mtDNA polymorphism.
Two categories of WZ females were distinguished, according to the mitochondrial lines they harbored. The first category can be found in the Ar, Lu, and No locations. In these populations, WZ females were in a minority, were always associated with numerous f-infected females, and shared with these f-females the most common mtDNA found in these populations. In contrast, WZ females from the Sc population were more abundant and harbored only the Av11 haplotype, which is more distantly related to the others (Table 2, Figure 4).
Genetic differentiation in A. vulgare:
The AMOVA analysis revealed that most of the haplotype diversity was found within populations. The
-statistics showed a high and significant level of genetic structure in our set of data (Table 3). The genetic distances (
ST) between pairs of populations are given in Table 4. A Mantel test showed that there was no correlation between the genetic and the geographic distances (Table 4; r2 = -0.146, P = 0.463). One could argue that the population No could have induced a bias in the results because of its greater geographic distance from all other populations. After removing this population from the analysis (i.e., by analyzing the structure only in the populations from the western central region of France), the results were similar: there was a high level of genetic structure (Table 3), and there was no correlation between geographic and genetic distances (r2 = -0.026, P = 0.874). The high level of structure observed in our samples was not due to isolation by distance.
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| DISCUSSION |
|---|
mtDNA variation and sex-determining mechanisms in A. vulgare:
The present study confirms the results previously obtained on SDM in A. vulgare on a larger data set (![]()
The wood lice Wolbachia-infected lineages possess two closely related mitochondrial types. The sequence of the nonconserved intergenic region ITS2 revealed no polymorphism between the different Wolbachia strains issued from different populations and linked with the two mitochondrial haplotypes. Due to the closeness of Wolbachia-linked mitochondrial haplotypes and that of the symbionts, and even if the haplotype phylogeny is not fully resolved with our set of data, it is therefore probable that this reflects a single infection event by Wolbachia, followed by a slight differentiation of the mtDNA. An alternative hypothesis could be that there has been a recent symbiont horizontal transfer between two already differentiated cytoplasms, a possibility that could not be dismissed in wood lice (![]()
The links between the two other SDMs and mitochondrial haplotypes were much more complex. Females harboring the f factor were found to possess all possible mitotypes. On the other hand, two types of associations were found between lineages harboring the W chromosome and mitotypes: in the Sc population, chromosomic females were frequent and they were associated with a single mitotype of a peculiar type compared to all others. In other populations, the rare chromosomic females harbored various mitotypes, which were always the most frequent types in the population. These two categories of chromosomic females could therefore be of different origin.
These results may be explained by two independent phenomena. The absence of linkage between the f factor and a given mtDNA lineage may confirm that this element does not possess pure maternal inheritance. If this was the case, a pattern of linkage similar to that observed with Wolbachia would have been observed. Paternal inheritance of f, even at low level, would break the link between the feminizing element and mtDNA (maternal) lineages because of the possibility of introgression of f into foreign maternal lines by the paternal route (![]()
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Another problem is that the most common mitochondrial type (Av3) found in all our populations was clearly not linked with Wolbachia. If Wolbachia were at the origin of the evolution of SDM at the geographic scale considered here, the most common mitotype would have been linked with these bacteria. We must therefore consider that the f factor was present in western central France before the Wolbachia. To clearly establish if another Wolbachia strain might have been at the origin of the f factor in these local populations, a wider sampling area is needed to find a Wolbachia associated with a mitotype closely related to Av3.
Genetic differentiation of A. vulgare populations:
Owing to the presence of cytoplasmic sex ratio distorters, the interpretation of mtDNA variability in terms of genetic structure of natural populations should be made with care. This is because sex ratio distorters tend to spread in populations and the associated cytoplasmic elements are also spread by hitchhiking (![]()
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The results of mtDNA variation in A. vulgare contrast with other species harboring reproductive parasites. In D. simulans, Wolbachia inducing cytoplasmic incompatibility often invade populations and carry the mitotype with which it is associated (![]()
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| ACKNOWLEDGMENTS |
|---|
We thank I. Michalakis for his help in the population structure analysis, and for discussions and helpful comments. Thanks are also due to R. Lawson for access to unpublished data, to J. Goudet for having provided the "Mantel test" program, to R. Terry for having improved the English of the article, and to one anonymous referee for his helpful comments on a previous version of the manuscript. This study was supported in part by a grant from the French Ministère de l'Education Nationale, de la Recherche et de la Technologie (ACC-SV3 no. 9503017).
Manuscript received January 29, 1999; Accepted for publication April 16, 1999.
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