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Two Loci, Tmevp2 and Tmevp3, Located on the Telomeric Region of Chromosome 10, Control the Persistence of Theiler's Virus in the Central Nervous System of Mice
F. Bihl1,a, M. Brahica, and J. F. Bureauaa Unité des Virus Lents (URA CNRS 1930), Institut Pasteur, 75724 Paris Cedex 15, France
Corresponding author: M. Brahic, Unité des Virus Lents, Institut Pasteur, 28, rue du Dr. Roux, 75724 Paris Cedex 15, France., mbrahic{at}pasteur.fr (E-mail)
Communicating editor: N. A. JENKINS
| ABSTRACT |
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Theiler's virus persistently infects the white matter of the spinal cord in susceptible strains of mice. This infection is associated with inflammation and primary demyelination and is studied as a model of multiple sclerosis. The H-2D gene is the major gene controlling viral persistence. However, the SJL/J strain is more susceptible than predicted by its H-2s haplotype. An (SJL/J x B10.S)F1 x B10.S backcross was analyzed, and one quantitative trait locus (QTL) was located in the telomeric region of chromosome 10 close to the Ifng locus. Another one was tentatively mapped to the telomeric region of chromosome 18, close to the Mbp locus. We now report the study of 14 congenic lines that carry different segments of these two chromosomes. Although the presence of a QTL on chromosome 18 was not confirmed, two loci controlling viral persistence were identified on chromosome 10 and named Tmevp2 and Tmevp3. Furthermore, the Ifng gene was excluded from the regions containing Tmevp2 and Tmevp3. Analysis of the mode of inheritance of Tmevp2 and Tmevp3 identified an effect of sex, with males being more infected than females.
THE DA strain of Theiler's virus, a picornavirus, causes a chronic demyelinating disease in genetically susceptible mice and is a model for multiple sclerosis (![]()
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Susceptibility to persistent infection and to demyelination differs greatly among strains of mice and is under the control of several genes, including the H-2D region of the major histocompatibility complex (MHC; ![]()
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Fourteen congenic lines, 9 with different telomeric regions of chromosome 10 and 5 with different telomeric regions of chromosome 18, have now been constructed and their susceptibility to Theiler's virus persistence has been studied. Although the presence of a susceptibility locus in the telomeric region of chromosome 18 was not confirmed, two susceptibility loci, Tmevp2 and Tmevp3, were localized respectively more centromeric and more telomeric than the Ifng locus on chromosome 10. The mode of inheritance of these loci was analyzed by intercrossing the congenic lines and crossing them with the SJL/J strain. An effect of sex was observed, with males being more infected than females.
| MATERIALS AND METHODS |
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Mice:
SJL/J mice were purchased from Janvier, France. B10.S mice were obtained from the Jackson Laboratory and the INSERM U93 animal facility (Hôpital Saint Louis, Paris, France). All animals were bred in the animal facility of the Pasteur Institute. B10.S-derived genetic intervals were transferred onto a susceptible (SJL/J) background by 10 successive backcrosses (N11) followed by intercrossing to establish homozygous founders. Conversely, an SJL/J-derived genetic interval was transferred onto a resistant (B10.S) background by 8 successive backcrosses (N9) followed by intercrossing to establish homozygous founders. At each generation during backcrossing, all the polymorphic markers described below were analyzed in the progeny to detect recombination and to derive as many congenic lines as possible. For testing phenotypes, 3- to 4-week-old mice were inoculated intracranially with 104 pfu of the DA strain of Theiler's virus in 40 µl of phosphate buffer saline (PBS) and killed 45 days later.
Microsatellite genotyping:
DNA was extracted from tail biopsies of weanling mice by standard methods. Primers for polymorphic microsatellite markers were obtained from Genset or synthesized by the Pasteur Institute Facility. Sequences of markers D10Mit68, D10Mit70, D10Mit135, D10Mit122, D10Mit73, D10Mit233, D10Mit180, D10Mit74, D10Mit234, D10Mit14, D10Mit164, D10Mit237, D10Mit151, D10Mit271, D18Mit8, D18Mit3, D18Mit127, D18Mit4, and D18Mit144 are available at http://www.genome.wi.mit.edu/cgi-bin/mouse/index/ and that of marker D18Nds1 (Mbp) at http://www.well.ox.ac.uk/~plyons/MouseData/NDSMicrosTop.html/. The primers used to detect a microsatellite intragenic to the Myf6 gene were 5'-GAAAGGGCACTGGGCTGTAC-3' and 5'-CGCCGGATTTGGCTGTTGCT-3'. The D10Pas4 marker detects a deletion in the promoter of the Ifng gene present in the SJL/J strain (P. MONTEYNE, F. BIHL, F. LEVILLAYER, M. BRAHIC and J. F. BUREAU, unpublished results). Genotyping was done on 150 ng of genomic DNA. DNA was amplified by PCR with a Gene Amp kit (GIBCO-BRL, Gaithersburg, MD) in a 9600 reactor (Perkin Elmer-Cetus, Norwalk, CT). After 2 min of denaturation at 94°, the DNA was submitted to 40 cycles of amplification under the following conditions: 94°, 30 sec; 55°, 30 sec; and 72°, 15 sec.
Quantification of viral RNA in the spinal cord:
The genotype of each infected congenic mouse was confirmed before analysis of its phenotype. Forty-five days after inoculation, anesthetized mice were perfused through the left ventricle with 20 ml of PBS and the spinal cord was immediately removed. Total RNA was extracted by the procedure of ![]()
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Statistical analysis:
The mean and standard error of mean of the amount of viral RNA in the spinal cord were calculated for each group of mice (1546 animals per group). The analysis of variance or the unlinked Student's t-test from the Statview F-4.5 package were used to analyze the results. For multiple tests (Table 2), the value of the P threshold was corrected according to the formula P = 1 - (1 - Pt)1/n, where Pt, the standard threshold for pointwise statistics, is equal to 0.05 (*) or 0.01 (**) and n is the number of tests.
To test the two-loci model, the variability of viral persistence among mice congenic for chromosome 10 was analyzed as a function of strain status after the animals were classified according to their sex. The analysis was performed either under no assumption, using a classical one-way analysis of variance, or after classification of the lines according to the two-loci model. For the latter, mice were divided in groups according to their sex and to the number of resistant B10.S alleles for each locus predicted by the model. For each group, variability of viral persistence was studied depending on strain status. In practice, the sums of squares and the degrees of freedom due to the strain status and to the residual were calculated for each group and added to perform a one-way analysis of variance.
| RESULTS |
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Construction of congenic lines:
Two loci controlling the persistence of Theiler's virus have been identified by analyzing the progeny of an (SJL/J x B10.S)F1 x B10.S backcross. One was located in the telomeric region of chromosome 10 and the other one tentatively located in the telomeric region of chromosome 18 (![]()
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Congenic lines were obtained from an (SJL/J x B10.S)F1 by successive backcrosses to the susceptible SJL/J parent with selection for B10.S genetic intervals containing the QTL. When a new combination of resistant alleles occurred, the corresponding animal was isolated and crossed further with the SJL/J strain to obtain a new congenic line. After 10 backcrosses, B10.S chromosomal segments were fixed at homozygosity by intercrossing heterozygous animals. Thus, 9 lines of congenic mice were obtained for the telomeric end of chromosome 10 and 4 for the telomeric end of chromosome 18. Another line was constructed, which had an SJL/J segment for the most distal part of chromosome 18 in a B10.S background. The SJL segment was fixed at homozygosity after 8 backcrosses (Table 1). The full names of these 14 lines are given in Table 1. For the sake of simplicity they are referred to as lines 1 to 14, as shown in the Table, in the rest of this article. The level of susceptibility of each line was measured as described in MATERIALS AND METHODS. Results were expressed as a dilution factor varying from 1 to 125 and as a score varying from 0 to 4 (Table 2 and Table 3).
Congenic lines for the telomeric region of chromosome 18:
The B10.S intervals of 4 congenic lines with a susceptible (SJL/J) background (lines 14) are shown in Figure 2B and Table 1. Although all 4 congenic lines had less viral RNA in their spinal cord than the SJL/J parent, this difference was not statistically significant (Figure 2A, Table 2). The SJL/J genetic interval of line 5, which has a resistant (B10.S) background, is shown in Figure 2B and Table 1. This line was not significantly less resistant than the B10.S parent (Figure 2A, Table 2). Therefore, the analysis of congenic lines for the telomeric region of chromosome 18 did not confirm the presence of a susceptibility locus in the region.
Congenic lines for the telomeric region of chromosome 10:
We first obtained three congenic lines (lines 68) carrying a B10.S chromosome 10 segment in an SJL/J background (Figure 3B and Table 1). All 3 lines were significantly less infected than the SJL/J parent (Figure 3A and Table 2). The differences of level of infection between the lines were not statistically significant. The level of persistent infection for these lines amounted to ~20% of that of the SJL/J parent. On the other hand, these lines were significantly more infected than the resistant B10.S parent. Interestingly, lines 7 and 8, which are both more resistant than the SJL/J parent, do not share B10.S genetic intervals derived from chromosome 10. This indicates that the region contains at least two susceptibility loci, which we named Tmevp2 and Tmevp3. Tmevp2 is located between markers D10Mit68 and D10Mit73, and Tmevp3 is between markers D10Mit73 and D10Mit271.
Refining the localization of the Tmevp3 locus:
The Ifng gene, which codes for interferon gamma and is a strong candidate for the control of viral persistence, is located within the genetic interval containing Tmevp3. To narrow down this interval and to examine the possibility that Tmevp3 might be Ifng, we derived 6 additional congenic lines (lines 914) with small B10.S segments in an SJL/J background (Figure 3B and Table 1). Line 9 was the only one that was significantly less infected than the SJL/J parental strain (Figure 3A and Table 2). In contrast, the level of infection for lines 1014 was not significantly different from that observed for the SJL/J strain. Because line 9 is more resistant than line 10, Tmevp3 must be located in a B10.S genetic interval particular to line 9. Available markers do not identify such an interval and, therefore, locating Tmevp3 requires making hypotheses. Tmevp3 cannot be located between D10Mit233 and D10Mit74 because line 9 is more resistant than line 10. On the other hand, Tmevp3 could be located within the genetic interval defined by markers D10Mit74 and (D10Mit234,D10Mit14)D10Mit234 and D10Mit14 cosegregate in all casesan interval that spans <1 cM. In this case, we need to hypothesize that, within the D10Mit74-(D10Mit234,D10Mit14) interval, the crossover that defines the telomeric border of the B10.S interval of line 9 is more telomeric than that which defines this border for line 10. It should be noted that the phenotypes of lines 9 and 10 were found to be statistically different in two independent experiments. Figure 3A and Table 2 show the results obtained by combining the data from both experiments. Interestingly, according to this model, Ifng is not in the interval containing Tmevp3.
Allelic segregation of the Tmevp2 and Tmevp3 loci:
The data presented so far allow us to propose a model in which two loci controlling viral persistence, Tmevp2 and Tmevp3, are localized at the telomeric extremity of chromosome 10. To test this model, lines 610 were crossed with each other and with the SJL/J strain, and a three-way analysis of variance was used to study the effect on viral persistence of allelic segregation for these two loci. The amount of viral genome was analyzed as a function of the allelic form of Tmevp2 and Tmevp3 and the sex of the animal (this analysis tests the effect of each factor independently from each other and, additionally, tests for possible interactions between them). The analysis was performed under the assumption that the Tmevp2 locus is located within the D10Mit68-D10Mit73 interval and the Tmevp3 locus is within the D10Mit74-(D10Mit234,D10Mit14) interval. It confirmed that viral persistence depends on both the Tmevp2 and Tmevp3 loci (Table 3). Furthermore, the susceptible allele of the Tmevp2 locus is dominant, or additive, over the resistant allele (Figure 4A), and the susceptible allele of the Tmevp3 locus is recessive, or additive, over the resistant allele (Figure 4B). Moreover, an effect of the sex of the animals was observed (Table 3), with males being more infected than females. This effect was not observed for mice homozygous for both the Tmevp2 and Tmevp3 loci (Figure 4C). No significant interaction was detected among these three factors (Table 3).
| DISCUSSION |
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The control of the susceptibility to Theiler's virus persistent infection of the CNS is multigenic. Our approach to dissect this complex system has been to select a chromosomal region containing a QTL and to isolate it by successively backcrossing the resistant allele of the QTL to a susceptible background. The congenic lines obtained with this procedure should confirm the existence of susceptibility loci and provide valuable tools to identify the mechanism of action of the responsible genes. Eventually, they should make the cloning of these genes possible.
In a previous study, we described two QTL involved in the control of Theiler's virus persistence, one on chromosome 10 and another one on chromosome 18 (![]()
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The phenotypes of mice congenic for the telomeric part of chromosome 18 did not confirm the existence of a locus that controls persistence in the region. This discrepancy with the localization of a QTL in the region can be explained in several ways. First, the linkage obtained in the genome scan (P = 0.002) might have been fortuitous. Second, the B10.S genetic intervals in the congenic lines might be too small to include a susceptibility locus. In particular, if this locus is more distal than our most telomeric marker, D18Mit144, it could have been excluded from the selected interval. Third, the effect of the locus might not be seen in the congenic lines because of interactions with other uncharacterized loci. Although a simple form of interaction is excluded because reciprocal lines 1 and 5 have the same level of susceptibility as the SJL/J and B10.S parental strains, respectively (Figure 3, Table 2), the possibility of more complex interactions between loci cannot be ignored.
The study of nine congenic lines for the telomeric region of chromosome 10 allowed us to prove the existence of at least two susceptibility loci in the region. Because of the resistance of line 8, we located the first locus, which we named Tmevp2, in a region of ~10.5 cM between markers D10Mit68 and D10Mit73. Determining the position of the other loci required making models. The simplest one, which has been described in RESULTS, calls for the existence of only one other susceptibility locus in the region, Tmevp3, located between markers D10Mit74 and (D10Mit234,D10Mit14), within an interval of <1 cM. The model implies that the telomeric extremity of the B10.S interval of line 9 is more telomeric than that of the susceptible line 10. Presently, D10Mit74 is the most telomeric marker for the B10.S interval of both lines. Therefore, to confirm this model and to characterize Tmevp3 it will be essential to identify polymorphic markers in the D10Mit74-(D10Mit234, D10Mit14) interval and to look for different crossover in this interval in lines 9 and 10. Other models can be envisioned. However, in their simplest form, they require the existence of three additional susceptibility loci besides Tmevp2, and interactions between them. Because of their complexity and because the statistical analysis of our data, described below, is congruent with the simple model, we do not favor these models.
To test the simple two-loci model, the "resistant" congenic lines described in Figure 3 were crossed with each other and with the SJL/J parent, and the phenotypes of these mice were measured. When the data for all chromosome 10 congenic lines and for these crosses were analyzed without taking any model into consideration, the effect of the strain status on the standard error was highly significant (F(49,502) = 2.047; P < 0.0001). When the data were reanalyzed with these lines and their crosses classified according to the simple two-loci model, the effect of the strain status on the standard deviation was drastically reduced (F(31,443) = 1.491; P = 0.0460). Therefore, most of the variability of viral persistence among congenic lines is explained by the model (57% of the total standard deviation is explained by Tmevp2 and Tmevp3).
An analysis of variance of our data according to the two-loci model showed an effect of sex, of Tmevp2 and Tmevp3, and no interaction between these factors (Table 3). Males are more infected than females. A greater susceptibility of males to clinical disease has been reported previously in the analysis of a different cross (![]()
Interestingly, this study showed that Ifng, a strong candidate gene for controlling viral persistence, is excluded from the regions containing Tmevp2 and Tmevp3. This is consistent with recent data from our laboratory on the expression pattern of the Ifng gene during the early phase of the infection (P. MONTEYNE, F. BIHL, F. LEVILLAYER, M. BRAHIC and J. F. BUREAU, unpublished results). Finally, it is interesting to note that our system illustrates once again how, in multigenic diseases, several susceptibility loci are often located within genetic intervals where a single QTL had originally been detected (![]()
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In summary, the use of congenic lines allowed us to exclude Ifng, a strong candidate gene, from the control of the persistent infection by Theiler's virus. Instead, our data led us to propose the existence of at least two susceptibility loci in the region. This study gives an example of the complexity of the genetic control of infections and illustrates the power of congenic mice to dissect such a control.
| FOOTNOTES |
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1 Present address: Center for the Study of Host Resistance, Montreal General Hospital, 1650 Cedar Ave., Room L11-144, Montreal, Quebec H3G 1A4, Canada. ![]()
| ACKNOWLEDGMENTS |
|---|
We thank S. Aubagnac and M. Tanguy for technical assistance, D. Gonzalez-Dunia, J.-L. Guénet, X. Montagutelli, E. Melanitou, and P. Monteyne for helpful discussion, and M. Gau for secretarial aid.
This work was supported by the Institut Pasteur Fondation, the Association pour la Recherche sur la Sclérose en Plaques, the Centre National de la Recherche Scientifique, the National Multiple Sclerosis Society, and the European Community Human Capital and Mobility Program (contract CHRX-CT94-0670). F.B. is a recipient of a scholarship from the Association pour la Recherche sur la Sclérose en Plaques.
Manuscript received November 17, 1998; Accepted for publication February 3, 1999.
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