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Genetic and Molecular Characterization of the Caenorhabditis elegans Gene, mel-26, a Postmeiotic Negative Regulator of MEI-1, a Meiotic-Specific Spindle Component
M. Rhys Dowa and Paul E. Mainsaa Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, Alberta T2N 4N1, Canada
Corresponding author: Paul E. Mains, Department of Biochemistry and Molecular Biology, University of Calgary, 3330 Hospital Drive N.W., Calgary, AB, T2N 4N1 Canada., mains{at}acs.ucalgary.ca (E-mail).
Communicating editor: R. K. HERMAN
| ABSTRACT |
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We have previously described the gene mei-1, which encodes an essential component of the Caenorhabditis elegans meiotic spindle. When ectopically expressed after the completion of meiosis, mei-1 protein disrupts the function of the mitotic cleavage spindles. In this article, we describe the cloning and the further genetic characterization of mel-26, a postmeiotic negative regulator of mei-1. mel-26 was originally identified by a gain-of-function mutation. We have reverted this mutation to a loss-of-function allele, which has recessive phenotypes identical to the dominant defects of its gain-of-function parent. Both the dominant and recessive mutations of mel-26 result in mei-1 protein ectopically localized in mitotic spindles and centrosomes, leading to small and misoriented cleavage spindles. The loss-of-function mutation was used to clone mel-26 by transformation rescue. As suggested by genetic results indicating that mel-26 is required only maternally, mel-26 mRNA was expressed predominantly in the female germline. The gene encodes a protein that includes the BTB motif, which is thought to play a role in protein-protein interactions.
ASSEMBLY of the meiotic spindle uses a mechanism distinct from that employed during mitosis. The traditional view of mitotic spindle formation holds that the centrioles, and associated material, nucleate the formation of microtubule asters. The microtubules extend from the asters, particularly toward the chromosomes, ultimately bridging the gap between the poles to form a bipolar spindle. Microtubules may attach to the kinetochores of the chromosomes, or may be cross-linked, possibly by kinesin-like proteins, with microtubules originating from the opposite pole (![]()
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Examination of the formation of meiotic spindles in oocytes of many organisms has demonstrated that a distinct spindle assembly mechanism is used (![]()
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-tubulin) in forming the mitotic spindle are sometimes absent from the poles of acentriolar meiotic spindles (![]()
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Because of the distinct mechanisms of spindle assembly used during meiosis and mitosis, it is likely that factors required for one type of division could disrupt spindle function if they are incorporated into a spindle of another type. In the nematode Caenorhabditis elegans, the cytoplasm of the egg must support both types of division, within 20 min of each other (![]()
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We have previously described a component unique to the oocyte meiotic spindle (![]()
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mel-26 was originally identified in a screen for dominant, temperature-sensitive (ts), maternal-effect embryonic lethal mutations (![]()
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In this article, we describe an apparent null allele of mel-26. The recessive phenotype of this mutation is identical to the dominant phenotype of mel-26(gf), indicating that the gf allele represents an antimorph. We used the null allele to clone mel-26 by transformation rescue, and we have begun the molecular characterization of this gene. One region of mel-26 protein (MEL-26) shows similarity to the recently defined bric à brac, tramtrack, and Broad Complex gene (BTB) motif that is thought to play a role in protein-protein interactions; otherwise, mel-26 is predicted to encode a novel protein.
| MATERIALS AND METHODS |
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Strains and culture conditions:
Nematode strains were maintained under standard conditions as described by ![]()
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Genetic identification and characterization of mel-26(lf):
mel-26(ct61) is a dominant, ts maternal-effect lethal mutation. To revert ct61 to a recessive lf allele, unc-29 mel-26(ct61)/unc-13 daf-8 lin-11 hermaphrodites were mutagenized with ethyl methanesulfonate (EMS) under standard conditions (![]()
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We were unable to separate ct61 from its cis-linked suppressor sb4, indicating that sb4 is likely an intragenic event. Lin non Daf crossovers were selected from the strain unc-29 mel-26(ct61sb4)/unc-13 daf-8 lin-11. Of 80 recombinants, 70 segregated Unc-29, indicating that these crossovers occurred in the 1.7 cM interval between unc-29 and lin-11. None of these was ts, indicating that if sb4 maps to the right of ct61, it is within 0.024 cM. Similarly, we selected Unc non Lin recombinants from the strain daf-8 mel-26(ct61sb4)/unc-29 lin-11. None of 56 recombinants were ts. If sb4 is to the left of ct61, it must be within 0.03 cM.
Microscopy and immunofluorescence:
Embryos were dissected from gravid hermaphrodites that had been maintained at the restrictive temperature for several hours, mounted on agarose pads, and observed with a Zeiss Axioplan microscope using Nomarski optics. The embryos were flash-photographed with Kodak TechPan film developed at 100 ASA.
Fixation for immunofluorescent staining was performed as described by ![]()
-tubulin (![]()
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Molecular cloning of mel-26:
The correlation between the physical and genetic maps of C. elegans identified cosmids with the potential of encoding the mel-26 gene. DNA from cosmids C08H1, D1004, F25H5, W04H6, W06D4, or ZK858 (10100 µg/µl) were separately mixed with the plasmid pFR4 [rol-6(su1006); 100 µg/µl]. This DNA was injected into the strain daf-8 mel-26(ct61sb4)/unc-13 lin-11. In C. elegans, DNA injected into the hermaphrodite gonad is concatenated into large extrachromosomal arrays that are incorporated into the developing oocytes, and the pRF4 plasmid confers a dominant Rolling phenotype allowing the identification of transformed animals (![]()
Initial cDNA library screening was conducted using a mixed-stage cDNA library in
ZAP (![]()
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Sequencing of mel-26:
Nested deletions of the cDNA and genomic clones were generated using the Erase-a-Base protocol (Promega, Madison, WI). These deletions were sequenced using the ABI PRISM fluorescent cycle-sequencing kit (Perkin Elmer, Foster City, CA). Sequence data were collected for both strands for both the genomic and cDNA clones of mel-26.
Mutations of mel-26 were identified using worms homozygous for the allele of interest, which were placed in a PCR tube containing 2.5 µl of worm lysis buffer (50 mM KCl, 2.5 mM MgCl2, 10 mM Tris-HCl (pH 8.3), 0.45% Tween-20, 0.45% NP-40, 0.01% gelatin, 60 µg/µl Proteinase K). Following a 60-min incubation at 60° followed by a 15-min incubation at 95° to eliminate Proteinase K activity, the entire 2.5 µl was used as the template DNA in a PCR reaction.
The PCR reactions were carried out in a total volume of 25 µl, containing the 2.5 µl of template, 25 pmol of each primer, and 1 unit of Taq Polymerase in PCR buffer (50 mM Tris-Cl, 1.5 mM MgCl2 and 0.2 mM each dNTP). The PCR parameters consisted of an initial 5 min incubation at 94°, 35 cycles of 94° for 40 sec, 55° for 40 sec, and 72° for 4 min and a final 5 min incubation at 72°. The positions of the 5' nucleotide [relative to the completed mel-26 sequence (GenBank accession no. U67737)] and the length and direction of the primers used for amplification or sequencing are as follows: primer-17 (419, 18, forward), primer-18 (739, 18, forward), primer-19 (1060, 18, forward), primer-14 (1402, 20, forward), primer-7 (1479, 20, forward), primer-9 (1818, 21, forward), primer-8 (2019, 20, reverse), primer-22 (2108, 23, forward), primer-23 (2908, 19, reverse), primer-13 (3243, 18, reverse), primer-24 (3453, 18, forward), primer-2 (3577, 20, reverse), primer-3 (3866, 20, forward), primer-25 (4028, 20, reverse), primer-16 (4248, 19, forward), primer-12 (4318, 18, reverse), primer-15 (4846, 18, reverse).
The entire PCR reaction was loaded on a 1% agarose gel, and the product was purified from the gel using the QiaQuick purification kit (Qiagen, Chatsworth, CA). Approximately 100 ng of the gel-purified DNA was sequenced using the ABI PRISM dye terminator cycle-sequencing protocol (Perkin Elmer) and internal primers. Mutations were confirmed by sequencing an independent PCR product.
Analysis of mel-26 mRNA:
The MicroFast Track 2.0 kit (Invitrogen, San Diego, CA) was used to isolate poly(A)+ RNA directly from mixed-staged N2 hermaphrodites for RT-PCR. This RNA was nonspecifically reverse transcribed using a poly(dT) primer with an EcoRI adaptor [dGCT GCA GAA TTC GTC GAC (TTT)6] and Superscript II reverse transcriptase (GIBCO BRL, Gaithersburg, MD). The resulting cDNA was RNase H treated to remove the complementary mRNA. A primer complementary to the SL1 trans-splice leader sequence and a gene-specific primer (primer-8) were used in a first-round amplification according to the Superscript II protocol. A second round of PCR, starting with 10% of the first-round product, was conducted using standard PCR conditions. The second-round product was gel-purified, cloned, and sequenced.
Wild-type embryos were collected using standard techniques (![]()
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Poly(A)+ RNA was isolated from staged gravid N2 and mel-26(ct61) hermaphrodites. The relative size and abundance of the mel-26 transcript in these samples was compared by Northern blot.
| RESULTS |
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Characterization of dominant and recessive alleles of mel-26:
The canonical mel-26 allele, ct61, was identified as a dominant ts maternal-effect embryonic lethal mutation (![]()
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ct61 and sb45 are qualitatively similar. As shown in Table 1, the ts maternal-effect lethality of both mutations was more severe when homozygous (lines 14), and as expected for alleles of the same gene, the mutations failed to complement for this property (line 5, although interpreting this as failure to complement is somewhat ambiguous given the dominant nature of the mutations). Interactions with other genes strengthens the interpretation that ct61 and sb45 are allelic. Like ct61, sb45 was dominantly enhanced by the mei-1(ct46gf) mutation (lines 68). We previously reported that mel-26(ct61) was suppressed by dominant suppressors of the gf allele mei-1(ct46), such as the dominant-negative allele mei-1(ct46sb82) and the mutation mei-2(ct102) (![]()
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The similar phenotypes of ct61 and sb45 reinforce the proposition that the two mutations are allelic. Embryos from animals of either strain show defects starting with the first mitotic division. The first mitotic spindle of C. elegans is normally oriented along the anterior-posterior axis, slightly posterior of center (Figure 1A). In embryos from both ct61 and sb45 hermaphrodites, the spindle was usually perpendicular to the anterior-posterior axis, at the extreme posterior of the embryo (Figure 1D and Figure G). The misoriented spindles induced cleavage furrows along the anterior-posterior axis at right angles to their normal positions. Anterior cytoplasts often formed, and cleavage furrows frequently retracted. As we had previously shown for ct61 (![]()
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To define the null phenotype of mel-26, we identified an intragenic revertant that converted the dominant gf "poison" characteristic of ct61 into a recessive lf allele (MATERIALS AND METHODS). One such mutation, ct61sb4, was found among approximately 12,000 mutagenized chromosomes. As expected for a lf intragenic revertant, sb4 could not be separated from ct61 by recombination, mapping in cis within 0.03 cM (MATERIALS AND METHODS). Furthermore, ct61sb4 had neither dominant maternal nor recessive zygotic effects on embryonic viability as the progeny of heterozygous hermaphrodites showed wild-type levels of hatching at all temperatures (Table 1, line 11). ct61sb4 resulted in recessive maternal-effect lethality, showing low levels of hatching at 15° but none at 25° (Table 1, line 12). ct61sb4/ct61sb4 was similar to ct61sb4/nDf23. (nDf23 is a deficiency that uncovers mel-26; Figure 2A.) This again suggests the lf nature of the revertant (Table 1, lines 13 and 14). Finally, ct61sb4, unlike its parent, was not a dominant enhancer of mei-1(ct46gf) (Table 1, line 15; compare to line 7).
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If sb4 represents an intragenic lf revertant of mel-26, its behavior in trans to ct61 and sb45 should mimic that of a deficiency. Progeny of both ct61/+ and sb45/+ hermaphrodites showed decreased hatching rates with increased temperature (Table 1, lines 1 and 3), and this was exacerbated to similar extents when the + was replaced with either nDf23 or ct61sb4 (Table 1, lines 1619). Thus, in all genetic tests, ct61sb4 behaved as a severe lf allele of mel-26.
The recessive embryonic defects of ct61sb4 were identical to those of sb45 and ct61. The early cleavage spindles were misoriented, reduced in size, and contained ectopic MEI-1 (Figure 1, JL). Because the dominant phenotypes of the gf mutations sb45 and ct61 resemble the recessive phenotypes of the lf mutation ct61sb4, sb45 and ct61 are antimorphic alleles by definition (![]()
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Molecular identification of mel-26:
DNA that included mel-26(+) was identified by transformation rescue of the recessive maternal-effect lethality of ct61sb4 as described in MATERIALS AND METHODS. mel-26 was previously mapped to the interval between the cloned genes unc-29 and lin-11 (Figure 2A); cosmids in this region were selected for analysis. Rescue was obtained with cosmid ZK858 but not with cosmids D1004, W06D4, W04H6, F25H5, or C08H1 (Figure 2B and Figure C). In comparison to mel-26(ct61sb4), which gave ~0.01% hatching at 25°, mel-26(ct61sb4) transformed with ZK858 showed hatching rates ranging from 2 to 8%. Injection of the 17.2-kb SalI fragment, the 9.7-kb BglII fragment, and a plasmid containing the 7.6-kb XhoI/BglII fragment all showed hatching above background. Two smaller fragments were not able to rescue the mutation (Figure 2C).
Using the 7.6-kb XhoI/BglII fragment as a probe, cDNA clones were found in the early embryonic library constructed by ![]()
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Sequence comparisons revealed that the C. elegans expressed sequence tag (EST) cm01e12 (![]()
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A poly(A)+ addition site was not contained within the longest cDNA, so the ends of the two remaining cDNA clones were sequenced to identify the point of polyadenylation. The site of polyadenylation is different in the two clones, occurring at positions 4772 and 4800 in GenBank accession no. 67737, respectively. The AAUGAA sequence starting at 4764 is a likely candidate for the polyadenylation signal; the C. elegans consensus is AAUAAA, with 13% having a G at the fourth position (![]()
Sequence analysis of mel-26:
The predicted MEL-26 product is 395 amino acids. Database searches using the BLAST set of programs (![]()
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Sequencing of ct61sb4 revealed the presence of a stop codon at amino acid position 320 (AGA
TGA), which is not present in either the wild-type or the ct61 sequences. In sb45, a G to A transition in codon 94 (TGT
TAT) predicts a cysteine to tyrosine change (Figure 3). The molecular change present in ct61 has not been identified in sequencing the entire coding region, all introns, and approximately 1 kb of upstream genomic sequence (see DISCUSSION).
Expression of mel-26 mRNA:
Previous genetic analysis of mel-26 mutations indicated a strict maternal requirement for gene activity, suggesting that it is required only in the female germline. The mel-26(ct61) temperature-sensitive period begins at the one-cell stage and extends to the onset of gastrulation (approximately 2 hr postfertilization; ![]()
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There is no indication that the mel-26(ct61) allele has any effect on the size or abundance of the mel-26 message (data not shown).
| DISCUSSION |
|---|
Characterization of the mei-1 gene of C. elegans has demonstrated that it is an essential component of the spindle during oocyte meiosis (![]()
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The interpretation that mel-26 represents a postmeiotic inhibitor of mei-1 was complicated by the gf nature of the original mel-26 allele, ct61. The genetic work we describe in this article confirms the interpretation that mel-26(+) does indeed inhibit mei-1 function. We identified a severe lf mutation of mel-26, ct61sb4, as an intragenic revertant of ct61, and we also describe a new dominant allele mel-26(sb45). The behaviors of the dominant mutations in trans to either a deficiency or ct61sb4 were very similar, indicating that ct61sb4 is near null (Table 1). The phenotypes of the dominant mutations are virtually identical to the recessive defects of ct61sb4, indicating that ct61 and sb45 are antimorphs (![]()
We cloned the mel-26 gene by transformation rescue of the recessive maternal-effect lethality of mel-26-(ct61sb4). One coding region and its corresponding cDNAs were identified in the minimal rescuing fragment. Northern blot analysis of this transcript indicates that it is most highly expressed in the female germline, consistent with genetic analysis of mel-26, which indicated only maternal gene function. The predicted product of the mel-26 gene is a member of a family of related C. elegans genes, showing full-length similarity to the deduced products of three genes predicted by the C. elegans Genomic Sequencing Project, T16H12.5, C07D10.2, and C50C3.8 (Figure 3). (These ORFs are not located near any genes known to interact with mel-26 or mei-1.)
The recently identified SPOPidentified as the major antigen in an autoimmune serum generating a speckled nuclear pattern by indirect immunofluorescent stainingalso shows full-length similarity to MEL-26; however, the product of the ORF T16H12.5, rather than MEL-26, likely represents the C. elegans homolog of SPOP, as extended regions of amino acid identity have been noted throughout the protein (![]()
MEL-26, SPOP, and the three C. elegans ORFs all contain a motif with some similarity to the BTB motif (![]()
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-helical structure that mediates dimerization. They used site-directed mutagenesis of residues within the BTB domain to demonstrate a sequence-specific interaction between molecules. It was also shown that mutation of two charged residues within the BTB domain abolished interaction with a wild-type BTB domain; however, the double mutant was able to bind to a second double mutant BTB domain.
The two antimorphic alleles of mel-26 interfere with the function of the wild-type allele. One simple model to explain this observation is that MEL-26 normally forms a multimeric complex, mediated by the BTB domain, and incorporation of mutant MEL-26 inactivates the complex. The strong lf allele ct61sb4 was isolated as a revertant of the dominant-negative ct61 allele and results in the loss of the C-terminal 75 amino acids; this may indicate that the C-terminal region of the protein, which does not include the BTB domain, plays a role in the formation or function of the putative multimeric complex.
It is notable that ct61sb4 was found at the relatively low frequency of 1/12,000 mutagenized chromosomes. The forward mutation rate after standard EMS mutagenesis in C. elegans is usually in the range of 1/1000 to 1/5000 (![]()
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We have been unable to identify the molecular lesion responsible for the ct61 allele, although we have sequenced the entire coding region of the gene, all introns, and 1 kb of promoter sequence. We have also compared the size and abundance of the mel-26 transcript and looked for the presence of genomic rearrangements in a ct61 background and have found no changes relative to wild type (data not shown). There are at least three possible explanations for this failure to find the mutation. First, it is formally possible that there are two closely linked loci that interact genetically [i.e., mel-26(ct61) and sup(sb4)] and that we have cloned sup(sb4) but not mel-26. sb45 results in a sequence change in the same gene as sb4 and would hence be an allele of sup(sb4) rather than mel-26. This scenario is unlikely, however. ct61 and sb45 are very similar to one another in that both are dominant ts maternal-effect lethal mutations and result in similar mitotic defects. Furthermore, both mutations respond in the same fashion when in trans to either ct61sb4 or a deficiency of the region, both ct61 and sb45 enhance mei-1(gf), and both are suppressed by mei-1 suppressors (Table 1). In addition, we were unable to isolate crossovers between ct61 and either sb4 or sb45. Thus, if ct61 represents a gene separate from sb4 or sb45, it must be within 0.03 cM of these mutations (see MATERIALS AND METHODS). Based on the estimates of ![]()
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Characterization of mel-26 suggests that the ct61sb4 allele is a null by both genetic and molecular criteria. At the same time, mel-26(ct61sb4) homozygotes exhibit a low, but not zero, level of hatching at 15°. This may represent residual gene activity. Alternatively, it may indicate that mel-26 is not absolutely essential at lower temperatures. This possibility, in turn, could indicate that the temperature sensitivity of the ct61 and sb45 alleles does not reflect a temperature-sensitive change in the mutant mel-26 protein products but rather the disruption of a process that is innately temperature-sensitivethat is, the elimination of mei-1(+) activity.
It is unclear how MEL-26 acts to inhibit MEI-1 activity following meiosis. Other than the BTB domain, there are no known motifs in the predicted protein to suggest a biological activity. Future analysis of the cellular distribution of MEL-26 may provide some clues.
| ACKNOWLEDGMENTS |
|---|
We thank DEBRA ZIMMERMAN, TOM CLANDININ, and NUHZAT AVERILL for early work on this project and members of the McGhee and Mains laboratories for many useful discussions. We also thank MARK EDGLEY and ANN ROSE for providing strains. Some strains were obtained from the Caenorhabditis Genetics Center, funded by the National Institutes of Health Center for Research Resources. This work was supported by studentships from the Natural Sciences and Engineering Research Council of Canada and the Alberta Heritage Foundation for Medical Research to M.R.D. and by grants from the Medical Research Council of Canada and the Alberta Heritage Foundation for Medical Research to P.E.M.
Manuscript received May 8, 1997; Accepted for publication May 27, 1998.
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